BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19500.1
Length=4313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890226 jgi|Araly1|890226|Al_scaffold_0007_2212 2433 0.0
Ahg925117 jgi|Araly1|925117|scaffold_200678.1 2213 0.0
Ahg494346 jgi|Araly1|494346|fgenesh2_kg.8__162__AT5G46260.1 71.3 6e-11
Ahg915424 jgi|Araly1|915424|Al_scaffold_0008_175 69.4 2e-10
> Ahg890226 jgi|Araly1|890226|Al_scaffold_0007_2212
Length=3369
Score = 2433 bits (1317), Expect = 0.0
Identities = 2042/2386 (86%), Gaps = 73/2386 (3%)
Strand=Plus/Plus
Query 1680 GCCAATGATGTCATTGATTTTCTTCGCACACGGCAG-GTTTTAGGCA-GCA--C--T-GA 1732
||||| || ||||||||||||||||||| |||||| || | |||| | | | | ||
Sbjct 904 GCCAAAGACGTCATTGATTTTCTTCGCATGCGGCAGACTTCT-GGCATGGAGGCTGTCGA 962
Query 1733 GGCTCTCGTTGACCGCCTCATTTTCA-GTAGTGAGGCATTTGGCATAAAACCTGA-GGAA 1790
|||||||| || ||||| || || ||||||| |||||| | ||| | |||
Sbjct 963 GGCTCTCGCTGGTTACCTCAAGGCCATGT-GTGAGGCGCATGGCATCAGACC-AATGGAC 1020
Query 1791 AACCCTTTTCGCAGCCAAGCTGTAACATCGTACTTGAAGGCGGCCAGGGATATGAC-ACG 1849
|| ||||||||||||| |||||| ||||| ||| | ||| | || || || ||||| | |
Sbjct 1021 AATCCTTTTCGCAGCCTAGCTGTGACATCATACCTAAAGTCAGCAAGTGAGATGACTA-G 1079
Query 1850 AGAAAAAGAATGCATACTT-GTGTTTTCGTGCCACGACAACCTTGATGTAGATGAAACAT 1908
|||||||||||||||| || || || |||||| | || |||| ||||||||| || ||||
Sbjct 1080 AGAAAAAGAATGCATA-TTAGTCTTCTCGTGCAATGAAAACCATGATGTAGACGAGACAT 1138
Query 1909 CTTTCATTGAAGCCATCTCAAAAGAATTGCACAAGC-AGGGGTTCATCCCTTTGACATAT 1967
|||| || |||||||| |||||||| || ||||||| || || ||| ||| |||| |||
Sbjct 1139 CTTTTATCGAAGCCATTTCAAAAGAGTTACACAAGCGAGAGG-TCACCCCGTTGATGTAT 1197
Query 1968 AATCTTTTGGGCAGAGAGAACCTCGATGAGGAGATGTTATACGGATCTAGAGTCGGTATC 2027
||||| || ||||||||||||| ||||| ||||| ||||| ||||||| || |||||
Sbjct 1198 AATCTACTGAGCAGAGAGAACCTGGATGAAAAGATGCTATACAGATCTAGTGTTGGTATT 1257
Query 2028 ATGATACTTTCA-AGTAGTTATGTTTCTTCTAGACAGTCCCTGGATCACCTGGTTGCAGT 2086
|||||||||||| | |||||||| || |||||||||| | || ||||| ||||| | | |
Sbjct 1258 ATGATACTTTCACA-TAGTTATGCTTGTTCTAGACAGGCTCTTGATCATCTGGTGGAAAT 1316
Query 2087 TATGGAGCATTGGAAAACAACAGACCTTGTAATTATTCCTATATATTTTAAAGTAAGACT 2146
||||||||| ||||| ||| | |||||||||||||||||||||||||||| || | |||
Sbjct 1317 CATGGAGCATGGGAAAGCAAGAAACCTTGTAATTATTCCTATATATTTTAAGGTGACACT 1376
Query 2147 TTCAGACATTTGTGGGTTGAAAGGCAGGTTTGAAGCAGCGTT-TCTGCAGCTTCATAT-G 2204
||||||||||||||||||| |||||||||||||| || || ||||||| | |||| |
Sbjct 1377 TTCAGACATTTGTGGGTTGGAAGGCAGGTTTGAACCA-ATTTATCTGCAG--T-ATATGG 1432
Query 2205 --TCT-CTCCAG-GAAGACAGAGTTCAGAAATGGAAGGCGGCTATGTCTGAAATAGTGTC 2260
||| | |||| ||| |||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 1433 ATTCTGC-CCAGCTAAG-CAGAGTTCAGAAATGGAAAGCGGCTATGGCTGAAATAGCGTC 1490
Query 2261 CATCGGTGGACATGAAT-GGACCAAGGGAAGTCA-GTTTATTCTTGCCGAGGAAGTTGTA 2318
||||| ||||||||||| ||| ||| |||| || |||| | ||||||||||||||||||
Sbjct 1491 CATCGATGGACATGAATGGGAAAAAGAGAAG-CAGGTTT-TGCTTGCCGAGGAAGTTGTA 1548
Query 2319 AGAAATGCATCCTTAAGGCTATA-TCTGAAAAGTAGCAAGAATCTGCTTGGAATCTTAGC 2377
||| | |||| ||||| ||||| || ||||| |||||||||||| || | ||||||||
Sbjct 1549 AGAGACGCATGCTTAAACCTATATTC-GAAAAACAGCAAGAATCTGATTAGCATCTTAGC 1607
Query 2378 GTTGTTAAATCACTCCCAGTCTACAGACGTGGAAATTATGGGAATCTGGGGTATAGCAGG 2437
|| ||||||||||||||| || ||| |||||||||| ||||| |||||||||| || ||
Sbjct 1608 ATTTTTAAATCACTCCCAGCCTTCAGGCGTGGAAATTGTGGGACTCTGGGGTATGGCTGG 1667
Query 2438 AATAGGTAAGACATCGATTGCAAGAGAAATATTTGAATTACAT-GCTCC-ACATTATGAT 2495
||||||||||||||| |||||||||||||| |||||| || | ||||| | | ||||||
Sbjct 1668 AATAGGTAAGACATCCATTGCAAGAGAAATTTTTGAAATA-TTAGCTCCGA-AATATGAT 1725
Query 2496 TTCTGTTACTTCCTGCAAGACTTTCATCTAATGTGTCAGATGAAAAGGCCGAGGCAATTG 2555
|| |||||||| |||||||||||| |||| ||| |||| | |||| ||| ||| ||| ||
Sbjct 1726 TTTTGTTACTTTCTGCAAGACTTTTATCTTATGAGTCAAAAGAAAGGGCTGAGACAAATG 1785
Query 2556 CGTGAAGATTT-TATCTCAAAATTGTTTGGGGAAG-AAAA--AGGTCTAGGTGC-TAGTG 2610
||||| ||||| | |||| ||| | || |||||| |||| | || || |||| || ||
Sbjct 1786 CGTGATGATTTCT-TCTCTAAAGTATTCAGGGAAGAAAAACTAAGTATAAGTGCTTA-TG 1843
Query 2611 ATGTAAAGCCAAGTTTCATGAGGGACTGGTTCCATaaaaaaaCGATTCTTCTCGTTCTTG 2670
|| |||| || |||||||||||||| |||||||| || |||||||||||||| ||||| |
Sbjct 1844 ATATAAAACCGAGTTTCATGAGGGATTGGTTCCACAAGAAAACGATTCTTCTTGTTCTCG 1903
Query 2671 ATGACGTGAGTAATGCCAGAGATGCAGAAGCTGTAATCGGAGGGTTTGGCTGGTTTTCTC 2730
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1904 ATGACGTGAGCGATGCCAGAGATGCAGAAGCTGTTGTTGGAGGGTTTGGCTGGTTTTCTC 1963
Query 2731 ATGGACACAGAATCATCTTAACCTCTAGGAGTAAACAAGTTCTTGTACAGTGTAAGGTTA 2790
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1964 ATGGACACAGAATCATCTTAACCTCTAGGAGAAAACAAGTTCTTGTACAGTGTAAGGTTA 2023
Query 2791 AAAAGCCATACGAGATCCAAAAATTAAGCGATTTTGAATCGTTTCGTCTCTGCAAACAAT 2850
|| || ||||| |||||||||| ||| |||| ||||||||||| ||||||||||||||||
Sbjct 2024 AAGAGACATACAAGATCCAAAAGTTATGCGAGTTTGAATCGTTACGTCTCTGCAAACAAT 2083
Query 2851 ATTTGGATGGCGAAAATCCGGTCATCTCT-GAGCTTATCAGCTGCAGTAGTGGTATTCCA 2909
|||| ||| |||| | |||||||| | ||||| || |||||||||||||| ||||||
Sbjct 2084 ATTTAAATGAAGAAAGTGGGGTCATCT-TGGAGCTGATGAGCTGCAGTAGTGGCATTCCA 2142
Query 2910 TTGGCTCTCAAACTTTT-AGTTTCCTCTGTATCAAAGCAGTATAT-AACGAATATGAAAG 2967
|||||||||||| |||| |||| |||| ||||||||||| | || ||| ||| |||| |
Sbjct 2143 TTGGCTCTCAAAGTTTTGGGTTT-CTCTTTATCAAAGCAGCACATAAAC-AATTTGAAGG 2200
Query 2968 ACCATCTCCAAAGCTTGAGGAAAGATCCTCCTACTCAGATTCAAGAAGCATTTCGGAGAA 3027
| |||||||| |||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 2201 AACATCTCCATAGCTTGCGGAAAAATCCTCCAACTCAGATTCAGGAAGCATTTCGGAGAT 2260
Query 3028 GTTTTGATGGACTAGATGAAAACGAGAAA-AACATATTTTTGGATCTTGCATGTTTTTTC 3086
| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 2261 GCTTTGATGGACTAGATGAAAACGA-AAAGAACATATTTTTGGACCTTGCATGTTTTTTT 2319
Query 3087 AG-GGGGCAGAGCAAAGATTATGCGGTGCTATTACTTGATGCTTGTGGtttttttACATA 3145
|| |||| ||| || |||| ||| |||| |||||||||||||||||| |||||||| ||
Sbjct 2320 AGAGGGG-AGAACATAGATCATGTGGTGAAATTACTTGATGCTTGTGGGTTTTTTACGTA 2378
Query 3146 TATGGGAATCTGTGAGCTCATTGACGAGTCACTCATTAGCCTTGTAGACAACAAGATAGA 3205
| ||||||||||||| |||||||||||||| |||||||||||| | ||||| | ||||||
Sbjct 2379 TTTGGGAATCTGTGATCTCATTGACGAGTCTCTCATTAGCCTTTTGGACAATAGGATAGA 2438
Query 3206 GATGCCTATTCCTTTTCAAGACATGGGCCGAATTATTGTTCATGAAGAAGATGAGGATCC 3265
||| |||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||
Sbjct 2439 GATCCCTATTCCTTTTCAAGACATTGGTCGATTTATTGTTCATGAAGAAGACGAGGATCC 2498
Query 3266 ATGTGAACGTAGCAGATTGTGGGACTCGAAGGACATCGTTGATGTTTTGACAAACAATTC 3325
|| ||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||
Sbjct 2499 TTGCGAACGTAGCAGATTGTGGGACTCTAATGACATCGCTGATGTTTTGAGAAACAATTC 2558
Query 3326 AGGAACAGAAGCAATTGAGGGCATCTTCCTGGATGCGTCTGACTTGACCTGCGAGCTT-A 3384
|||||| ||||||||||| |||||||||||||||||||||| | ||||||| ||| || |
Sbjct 2559 AGGAACTGAAGCAATTGAAGGCATCTTCCTGGATGCGTCTGTCCTGACCTGTGAG-TTGA 2617
Query 3385 GTCCTACTGTGTTTGGTAAGATGTATAATCTTAGATTGCTGAAGTTCTATTGTTCAACCT 3444
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2618 GTCCTACTGTGTTTGGTAAGATGTATAATCTTAGATTGCTGAAGTTCTATTGTTCCACCT 2677
Query 3445 CTGGGAACCAGTGCAAGCTTACTCTACCTCACGGCCTAGACACTTTGCCTGATGAGCTAA 3504
||| ||| |||| ||||| | ||||||||| ||||| ||||||||||||||||||||||
Sbjct 2678 CTGAGAATGAGTGTAAGCTAAGTCTACCTCAAGGCCTCGACACTTTGCCTGATGAGCTAA 2737
Query 3505 GTCTACTTCACTGGGAGAATTACCCTCTGGTTTACTTGCCTCAGAAATTTAATCCTGTGA 3564
| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||
Sbjct 2738 GGCTACTTCACTGGGAGAACTACCCTCTGGAATACTTGCCTCATAAATTTAATCCTGAGA 2797
Query 3565 ACCTTGTAGAGTTAAACATGCCTTATAGCAACATGGAGAAGTTGTGGGAAGGAAAGAAAA 3624
||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 2798 ACCTTGTAGAGATAAACATGCCATATAGCAACATGGAAAAGTTATGGGAAGGAAAGAAAA 2857
Query 3625 ATCTCGAGAAGCTAAAGAACATCAAACTGAGTCACTCCAGAGAATTAACTGATATCCTGA 3684
|||| |||||||||||||| |||||| ||||| |||||||| |||| |||||||||||||
Sbjct 2858 ATCTTGAGAAGCTAAAGAATATCAAATTGAGTTACTCCAGAAAATTGACTGATATCCTGA 2917
Query 3685 TGTTATCAGAAGCCCTGAACCTGGAACACATTGATCTCGAAGGGTGTACGAGTCTGATTG 3744
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 2918 TGTTATCAGAAGCCCTGAACCTTGAACATATTGATCTCGAAGGGTGTACAAGTCTGATTG 2977
Query 3745 ATGTTAGCATGTCTATTC-CT-TGTTGTGGGAAGCTTGTTTCCTTGAATATGAAAGACTG 3802
||||||||| ||||||| | | ||| || |||||||||||||||||||||||||||||
Sbjct 2978 ATGTTAGCACATCTATTCGCCATCTTG-GG-AAGCTTGTTTCCTTGAATATGAAAGACTG 3035
Query 3803 TTCTCGTTTGCGAAGTCTGCCTTCTATGGTTGATTTAACAACTCTCAAGCTTCTTAATTT 3862
||| ||||||| || |||||| || ||||| |||||||| ||||||||| ||||||||
Sbjct 3036 TTCCCGTTTGCAAACTCTGCCGTCCATGGTCAATTTAACATCTCTCAAGCGCCTTAATTT 3095
Query 3863 GTCTGGCTGCTCAGAATTTGAGGATATTCAGGATTTTGCACCAAACCTGGAAGAGATATA 3922
|||||||||||||| |||| || || ||||||||||||||||||||||||||| || |
Sbjct 3096 TTCTGGCTGCTCAGAGCTTGATGAGATCCAGGATTTTGCACCAAACCTGGAAGAGTTACA 3155
Query 3923 TCTAGCTGGGACAT-CCATTAGAGAGCTTCCGTTGTCAATC-AGGAATCTCACTGAACTT 3980
|||||||||| | | |||||||||| |||| || |||||| || |||||||||||||||
Sbjct 3156 TCTAGCTGGGTC-TGCCATTAGAGAAATTCCATTCTCAATCTAG-AATCTCACTGAACTT 3213
Query 3981 GTTACGCTAGATCTGGAGAACTGC-GAAAGGCTTCAGGAAA-TGCC 4024
|||||||||||||||||||||||| ||| |||||||| ||| ||||
Sbjct 3214 GTTACGCTAGATCTGGAGAACTGCAGAA-GGCTTCAG-AAACTGCC 3257
> Ahg925117 jgi|Araly1|925117|scaffold_200678.1
Length=2326
Score = 2213 bits (1198), Expect = 0.0
Identities = 1880/2204 (85%), Gaps = 67/2204 (3%)
Strand=Plus/Plus
Query 1856 AGAATGCATACT-TGTGTTTTCGTGCCACGACAACCTTGATGTAGATGAAACATC-TTTC 1913
||||||| || | || ||||| ||| | |||| || |||||| || || ||| | |||
Sbjct 32 AGAATGCGTA-TCAGTCTTTTCATGCAATGACAGCCATGATGTGGACGAGACA-CAGTTC 89
Query 1914 ATTGAAGCCATCTCAAAAGAATTGCACAAGCAG-GGGTTCATC-CCTTTGACATATAATC 1971
|| |||||||||| |||||| |||||| ||| | ||| ||| | |||||||| |||||||
Sbjct 90 ATGGAAGCCATCTTAAAAGAGTTGCACGAGC-GAGGGATCA-CACCTTTGACGTATAATC 147
Query 1972 TTTTGGGCAGAGAGAACCTCG-ATG-AGGAGATGTTATACGGATCTAGAGTCGGTATCAT 2029
||| || |||||||| || | | | | || |||||| || ||||||| || ||||| ||
Sbjct 148 TTTCAGGAAGAGAGAA-CTTGAACGTA-GAAATGTTAAACAGATCTAGTGTTGGTATTAT 205
Query 2030 GATACTTTCAAGTAGTTATGTTTCTTCTAGACAGTCCCTGGATCACCTGGTTGCAGTTAT 2089
| || |||||| |||||| |||| ||||| ||||||| ||||||| || || ||| | ||
Sbjct 206 GGTATTTTCAAATAGTTACGTTTGTTCTAAACAGTCCTTGGATCATCTTGTGGCAATCAT 265
Query 2090 GGAGCATTGGAAAAC-AACAGACCTTGTAATTATTCCTATATATTTTAAAGTAAGACTTT 2148
||||||||||||| | || |||| |||||||||| ||||||||||||||||| | || ||
Sbjct 266 GGAGCATTGGAAAGCGAA-AGACATTGTAATTATCCCTATATATTTTAAAGTGACAC-TT 323
Query 2149 C-AGACATTTGTGGGTTGAAAGGCAGGTTTGAAGCAGCGTTTCTGCAGCTTCATATGTCT 2207
| | ||||||||||||||||||||| || ||||||||| ||| |||||||||| | ||||
Sbjct 324 CAACACATTTGTGGGTTGAAAGGCATGTCTGAAGCAGCATTTATGCAGCTTCAGAGGTCT 383
Query 2208 CTCCAGGAAGACAGAGTTCAGAAATGGAAGGCGGCTATGTCTGAAATAGTGTCCATCGGT 2267
|||||||||||||||||||||||||||||| |||| || ||||||||| ||||| | |
Sbjct 384 CTCCAGGAAGACAGAGTTCAGAAATGGAAGATGGCTCTGGCTGAAATAGAATCCATTGAT 443
Query 2268 GGACATGAATGGAC-CAAGGGAAGTCAGTTTATTCTTGCCGAGGAAGTTGTAAGAAATGC 2326
|||||||||||||| ||||| | | || |||| ||||| ||||||||||| ||||| ||
Sbjct 444 GGACATGAATGGACAAAAGGG-ACTGAGGTTATGCTTGCTGAGGAAGTTGTTAGAAACGC 502
Query 2327 ATCCTTAAGGCTATA-TCTGAAAAGTAGCAAGAATCTGCTTGGAATCTTAGCGTTGTTAA 2385
|| ||||||| |||| || ||||| ||||||||||||| | |||||||||| |||||||
Sbjct 503 ATGCTTAAGGTTATATTC-GAAAAATAGCAAGAATCTGGTCAGAATCTTAGCATTGTTAA 561
Query 2386 ATCACTCCCAGT-CTACAGACG-TGGAAATTATGGGAATCTGGGGTATAGCAGGAATAGG 2443
|||| ||||| | || |||| | | |||||| ||||||| |||||||| |||||||||||
Sbjct 562 ATCAGTCCCA-TCCTTCAGATGCT-GAAATTGTGGGAATTTGGGGTATGGCAGGAATAGG 619
Query 2444 TAAGACATCGATTGCAAGAGAAATATTT-GAATTACAT-GCTCCACATTATGATTTCTGT 2501
||||||||| |||||||||||||| ||| ||||| | | |||||||| |||||| | |||
Sbjct 620 TAAGACATCCATTGCAAGAGAAATTTTTGGAATT-C-TAGCTCCACAATATGATATGTGT 677
Query 2502 TACTTCCTGCAAGACTTTCATCTAATGTGTCAGATGAAAA-GGCCGAGGCAATTGCGTGA 2560
||||| |||||||||||| |||||| ||||| | |||| ||| ||||||| |||||||
Sbjct 678 TACTTTCTGCAAGACTTTGATCTAACATGTCA-AACAAAAGGGCTGAGGCAAATGCGTGA 736
Query 2561 AGATTTTA-TCTC-AAAATTGTTTGGGGAAG-AAAA--AGGTCTAGGTGCTAGTGATGTA 2615
|| |||| | || |||| | |||||||||| |||| | || |||| ||| |||| ||
Sbjct 737 TGA-TTTATTTTCTAAAA-TATTTGGGGAAGAAAAACTAAGTATAGGCGCTTCTGATATA 794
Query 2616 AAGCCAAGTTTCATGAGGGACTGGTTCCATaaaaaaaCGATTCTTCTCGTTCTTGATGAC 2675
|| | ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 795 AAAACGAGTTTCATGAGGGACTGGTTCCAGGAAAAAACGATTCTTCTTGTTCTCGATGAC 854
Query 2676 GTGAGTAATGCCAGAGATGCAGAAGCTGTAATCGGAGGGTTTGGCTGGTTTTCTCATGGA 2735
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 855 GTGAGTAATGCCAGAGATGCAGAAGCTGTAGTTGGAGGGTTTGGCTGGTTTTCTCATGGA 914
Query 2736 CACAGAATCATCTTAACCTCTAGGAGTAAACAAGTTCTTGTACAGTGTAAGGTTAAAAAG 2795
|||||||||||| ||||||||||||| ||||||||||||||||| || | ||||||| ||
Sbjct 915 CACAGAATCATCATAACCTCTAGGAGAAAACAAGTTCTTGTACAATGCAGGGTTAAAGAG 974
Query 2796 CCATACGAGATCCAAAAATTAAGCGATTTTGAATCGTT-TCGTCTCTGCAAACAATATTT 2854
||||||||||||||||| ||| |||| |||||||| || |||||||||||| ||||||||
Sbjct 975 CCATACGAGATCCAAAAGTTATGCGAGTTTGAATC-TTCTCGTCTCTGCAAGCAATATTT 1033
Query 2855 GGATGGCGAAAATCCGGTCATCTCTGAGCTTATCAGCTGCAGTAGTGGTATTCCATTGGC 2914
| |||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1034 GAATGGAGAAAATGTGGTCATCTCAGAGCTTATGAGCTGCAGTAGTGGTATTCCATTGGC 1093
Query 2915 TCTCAAACTTTTAGTTTCCTCTGTATCAAAGCAGTATATAA-CGAATATGAAAGACCATC 2973
|||||| || | | ||||||||||||||||||| ||| || | |||||||| || ||||
Sbjct 1094 TCTCAATGTTCTGGGTTCCTCTGTATCAAAGCAGCATAGAAGC-AATATGAAGGAACATC 1152
Query 2974 TCCAAAGCTTGAGGA-AAGATCCTCCTACTCAGATTCAAGAAGCATTTCGGAGAAGTTTT 3032
||||||||||| ||| || ||||||| |||||||||||||| | ||| | || ||| |||
Sbjct 1153 TCCAAAGCTTGCGGAGAA-ATCCTCCAACTCAGATTCAAGACGAATTCCAGAAAAGCTTT 1211
Query 3033 GATGGACTAGATGAAAACGAGAAA-AACATATTTTTGGATCTTGCATGTTTTTTCAG-GG 3090
| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1212 GGTGGACTAGACGAAAACGA-AAAGAACATATTTTTGGATCTTGCATGTTTTTTCACAGG 1270
Query 3091 GGCAGAGCAAAGATTATGCGGTGCTATTACTTGATGCTTGTGGtttttttACATATATGG 3150
|| ||| ||||||| ||| ||||| | |||||||||||||||| |||||||||||| |||
Sbjct 1271 GG-AGAACAAAGATCATGTGGTGCAAATACTTGATGCTTGTGGGTTTTTTACATATTTGG 1329
Query 3151 GAATCTGTGAGCTCATTGACGAGTCACTCATTAGCCTTGTAGACAACAAGATAGAGATGC 3210
|||||||||| |||||||||||||| ||||||||| |||||||| | || || |||||||
Sbjct 1330 GAATCTGTGATCTCATTGACGAGTCTCTCATTAGCGTTGTAGACGATAAAATCGAGATGC 1389
Query 3211 CTATTCCTTTTCAAGACATGGGCCGAATTATTGTTCATGAAGAAGATGAGGATCCATGTG 3270
|| ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||| |
Sbjct 1390 CTGTTCCTTTTCAAGATATTGGTCGATTTATAGTTCATGAAGAAGGCGAGGATCCATGCG 1449
Query 3271 AACGTAGCAGATTGTGGGACTCGAAGGACATCGTTGATGTTTTGACAAACAATTCAGGAA 3330
|||||||||||||||||||||| || ||||||| | |||| |||||| |||||| ||||
Sbjct 1450 AACGTAGCAGATTGTGGGACTCTAAAGACATCGCTAATGTATTGACACGCAATTCCGGAA 1509
Query 3331 CAGAAGCAATTGAGGGCATCTTCCTGGATGCGTCTGACTTGACCTGCGAGCTTAGTCCTA 3390
| ||||| ||||| ||||| ||||||||||| |||||||||| || |||||||||||||
Sbjct 1510 CTGAAGCGATTGAAGGCATTTTCCTGGATGCTTCTGACTTGAACTATGAGCTTAGTCCTA 1569
Query 3391 CTGTGTTTGGTAAGATGTATA-ATCTTAGATTGCTGAAGTTCTATTGTTCAACCTCTGGG 3449
|| ||||| |||||||||||| | || |||||||||||| |||||| ||| ||| |||||
Sbjct 1570 CTATGTTTAGTAAGATGTATAGA-CTAAGATTGCTGAAGCTCTATTTTTCCACCCCTGGG 1628
Query 3450 AACCAGTGCAAGCTTACTCTACCTCACGGCCTAGACACTTTGCCTGATGAGCTAAG-TCT 3508
|||||||||||||| | |||| |||| ||||| |||||||||| |||||||| || | |
Sbjct 1629 AACCAGTGCAAGCTAAGTCTATCTCAAGGCCTCTACACTTTGCCCGATGAGCTCAGGT-T 1687
Query 3509 ACTTCACTGGGAGAATTACCCTCTGGTTTACTTGCCTCAGAAATTTAATCCTGTGAACCT 3568
|||||| ||||||||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 1688 ACTTCATTGGGAGAATTATCCTCTGGAATACTTGCCTCAGAAATTTAATCCTGAAAATCT 1747
Query 3569 TGTAGAGTTAAACATGCCTTATAGCAACATGGAGAAGTTGTGGGAAGGAAAGAAAAATCT 3628
||||||| |||||||||| |||||||||||||||||| | |||||||| |||||||||||
Sbjct 1748 TGTAGAGATAAACATGCCCTATAGCAACATGGAGAAGCTATGGGAAGGGAAGAAAAATCT 1807
Query 3629 CGAGAAGCTAAAGA-ACATCAAACTGAGTCACTCCAGAGAA-TTAACTGATATCCTGATG 3686
|||||||||||||| | || |||||||||||||||||| || |||||||| || || ||
Sbjct 1808 CGAGAAGCTAAAGAGA-ATTAAACTGAGTCACTCCAGA-AACTTAACTGACGTCATGGTG 1865
Query 3687 TTATCAGAAGCCCTGAACCTGGAACACATTGATCTCGAAGGGTGTACGAGTCTGATTGAT 3746
|||||||||||| ||||||| ||||| |||||||||||||| |||| |||||| ||||
Sbjct 1866 TTATCAGAAGCCTTGAACCTTGAACATATTGATCTCGAAGGATGTATTAGTCTGGTTGAC 1925
Query 3747 GTTAGCATGTCTATTCCTTGTTGTGGGAAGCTTGTTTCCTTGAATATGAAAGACTGTTCT 3806
||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1926 GTTAGCACATCTATTCCTAGTTGTGGGAAGCTTGTTTCATTAAATTTGAAAGACTGTTCT 1985
Query 3807 C-GTTTGCGAAGTCTGCCTTCTATGGTTGATTTAACAACTCTCAAGCTTCTTAATTTGTC 3865
| ||| || |||||||||| | ||| ||| |||| | |||||||||||||| | ||||
Sbjct 1986 CAGTT-GCAAAGTCTGCCTGCCATGTTTGGGTTAATATCTCTCAAGCTTCTTCGTATGTC 2044
Query 3866 TGGCTGCTCAGAATTTGAGGATATTCAGGATTTTGCACCAAACCTGGAAGAGATATATCT 3925
|||||||||||| || ||||| ||||||||||||||||||||| || ||||| |||||||
Sbjct 2045 TGGCTGCTCAGAGTTCGAGGAGATTCAGGATTTTGCACCAAACTTGAAAGAGTTATATCT 2104
Query 3926 AGCTGGGACAT-CCATTAGAG-AGCTTCCGTTGTCAATC-AGGAATCTCACTGAACTTGT 3982
||||||||| | |||| | || | ||||| ||||||||| || ||||||||||||||| |
Sbjct 2105 AGCTGGGAC-TGCCATAA-AGGAACTTCCATTGTCAATCGAG-AATCTCACTGAACTTAT 2161
Query 3983 TACGCTAGATCTGGAGAACTGCGA-AAGGCTTCAGGAAA-TGCC 4024
|||||| ||||| ||||||||| | |||||||||| ||| ||||
Sbjct 2162 TACGCTTGATCTTGAGAACTGC-ACAAGGCTTCAG-AAACTGCC 2203
> Ahg494346 jgi|Araly1|494346|fgenesh2_kg.8__162__AT5G46260.1
Length=3513
Score = 71.3 bits (38), Expect = 6e-11
Identities = 66/78 (85%), Gaps = 7/78 (9%)
Strand=Plus/Plus
Query 729 TCTGAGAAAGCT-AGAATGGTCGGGATTTCGGGG--CCTTCAGGGATTGGTAAGACTACC 785
|||||| ||| | |||||||| || || | |||| || |||||||||||||||||||||
Sbjct 598 TCTGAGGAAG-TGAGAATGGTTGGTATAT-GGGGTTCC-TCAGGGATTGGTAAGACTACC 654
Query 786 ATCGCAAAAGCTCT-TTT 802
||||||| |||||| |||
Sbjct 655 ATCGCAAGAGCTCTGTTT 672
> Ahg915424 jgi|Araly1|915424|Al_scaffold_0008_175
Length=3651
Score = 69.4 bits (37), Expect = 2e-10
Identities = 65/77 (84%), Gaps = 7/77 (9%)
Strand=Plus/Plus
Query 730 CTGAGAAAGCT-AGAATGGTCGGGATTTCGGGG--CCTTCAGGGATTGGTAAGACTACCA 786
||||| ||| | |||||||| || || | |||| || ||||||||||||||||||||||
Sbjct 602 CTGAGGAAG-TGAGAATGGTTGGTATAT-GGGGTTCC-TCAGGGATTGGTAAGACTACCA 658
Query 787 TCGCAAAAGCTCT-TTT 802
|||||| |||||| |||
Sbjct 659 TCGCAAGAGCTCTGTTT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163114757878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5