BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19510.1
Length=4225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890225 jgi|Araly1|890225|Al_scaffold_0007_2211 1179 0.0
> Ahg890225 jgi|Araly1|890225|Al_scaffold_0007_2211
Length=3141
Score = 1179 bits (638), Expect = 0.0
Identities = 928/1065 (87%), Gaps = 31/1065 (3%)
Strand=Plus/Plus
Query 1454 TTGAGATGCATGATCTATTGCATGCAATGGGGAAGGAAATTGGAAAAGAAAAATCCATCA 1513
||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1430 TTGAGATGCATGATCTAATGCATGCAATGGGGAAGGAAATTGGATATGAATCATCCATCA 1489
Query 1514 GAAA-GGCAGGCGAACGTCGTAGGTTGTGGAACCACAAAGATATTCGTGATATCCTGGAG 1572
||| ||||||| ||||| | |||||||||||||||||||||||||| || | ||||||
Sbjct 1490 -AAAGGGCAGGCAAACGTAGCAGGTTGTGGAACCACAAAGATATTCGCAATGTGCTGGAG 1548
Query 1573 CATA-ACACGGGCACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCTGAA-GTCAG-A 1629
|| | | ||||| |||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 1549 CAGAGA-ACGGGAACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCT-AATGTC-GAA 1605
Query 1630 AGAATCAAGCTTTTTCCTG-CTGCTTTCACGATGTTGTCAAAACTCAAATTCCTGAAATT 1688
|| |||||||| ||||| | | ||||| || | |||| || |||||||||||||| ||
Sbjct 1606 AGGATCAAGCTAAGTCCTGAC-GTTTTCATGAGGATGTCGAATCTCAAATTCCTGAAGTT 1664
Query 1689 CCACAGTTCTCATTGTTCTCAGTGGTGTGATAATGACCATATATTTCAGTGCTCCAAAGT 1748
||||| |||||||||||| |||||||||||||| ||||||| | |||| | ||| ||||
Sbjct 1665 CCACAATTCTCATTGTTCCCAGTGGTGTGATAACGACCATAAAATTCAATTCTCTAAAGG 1724
Query 1749 CCCTGATCACTTTCCAGATGAGCTTGTTTACCTTCACTGGCAGGGGTATCCC-TATGATT 1807
| |||||| ||||| ||||||||||| |||||||||||||||||||| ||| || || |
Sbjct 1725 GCTTGATCATTTTCCGGATGAGCTTGTGTACCTTCACTGGCAGGGGTA-CCCTTACGAAT 1783
Query 1808 GCCTGCCATCAGATTTCGATCCAAAGGAACTTGTCGATCTTAGTCTGCGTTATAGCCACA 1867
| |||||||| ||| ||||| |||||||||| ||||||||||| ||||||||| |||
Sbjct 1784 ATTTACCATCAGAATTCAATCCAGAGGAACTTGTTGATCTTAGTCTACGTTATAGCTACA 1843
Query 1868 TCAAACAACTGTGGGAAGATGAGAAGAATACAGAAAGTTTAAGATGGGTCGATCTCGGTC 1927
|||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||| |||
Sbjct 1844 TCAAACAACTGTGGGAAGATGATAAGAAAACGGAAAATTTAAGATGGGTCGACCTCAGTC 1903
Query 1928 AGTCAAAAGACTTGCTAAATTTATCAGGTTTATCCAGGGCCAAAAATCTTGAAAGATTGG 1987
||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1904 AGTCAAAAGACTTGCGGAGTTTATCAGGTTTGTCCAAGGCTAAAAATCTTGAAAGATTGG 1963
Query 1988 ATCTTGAAGGCTGTACGAGTTTGGATCTCTTGGGCTCAGT-AA---AACAGATGAACGAA 2043
| || ||||||||||||||||||| ||| ||||||||| | || || ||||||| ||
Sbjct 1964 ACCTCGAAGGCTGTACGAGTTTGGTTCTGTTGGGCTCA-TCAATCGAAAAGATGAAAAAA 2022
Query 2044 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAAAGGGATTCAAA 2103
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2023 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAGAGGGAATCAAA 2082
Query 2104 ATAAAATCTCTT-AAGACTCTGATCCTCAGTGGTTGCTTAAAACTT-AAGGACTTTCATA 2161
|| ||||| || |||||||||||||||||||| |||| ||| ||| ||| | ||||| |
Sbjct 2083 TTAGAATCT-TTGAAGACTCTGATCCTCAGTGGCTGCTCAAACCTTCAAG-AGTTTCAAA 2140
Query 2162 TTATATCAGA-AAGTATTGAATCCCTTCATTTGGAAGGCACAGCAATCGAACGAGTTGTT 2220
|||||||||| || ||||||||| ||| ||||||||||| ||||||| |||| |||||||
Sbjct 2141 TTATATCAGACAA-TATTGAATCTCTTTATTTGGAAGGCTCAGCAATTGAACAAGTTGTT 2199
Query 2221 GAACACATCGAGAGTCTTCACAGCCTTATTTTGCTGAATCTCAAGAATTGT-G-AGAAAT 2278
||||||||||||||||||| || |||||| ||||||||||||||||||||| | || |
Sbjct 2200 GAACACATCGAGAGTCTTCGCAACCTTATATTGCTGAATCTCAAGAATTGTCGCAGG--T 2257
Query 2279 TGAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTCCAAGAACTGGTTCTCTCTG 2338
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2258 TAAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTTCAAGAACTGATTCTCTCTG 2317
Query 2339 GTTGTTCAGCGCTGGAGAGTCTTCCGCCCATCAAAGAGAAGATGGAATGCTTAGAGATTT 2398
| ||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 2318 GCTGTTCAGCGTTGGAGAGTCTTCCACCAATCAAAGAGGAGATGGAATGCTTAGAGATTT 2377
Query 2399 TGCTTATGGATGGAACGTCTATCAAACAAACACCTGAAATGAGTTGTTTGAGTAACCTCA 2458
||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||
Sbjct 2378 TGCTTATGGATGGAACGTCCATCAAACAGACACCTGAAACGATTTGTTTGAGTAACCTCA 2437
Query 2459 AAAT-TTGTTCGTTCTGTCGACCT-GTTATCGACGATTCCACAGG 2501
| || || |||||| ||| || || | ||||| |||||||||||
Sbjct 2438 AGATGTT-TTCGTTTTGTGGATCTAGC-ATCGAAGATTCCACAGG 2480
Score = 399 bits (216), Expect = 6e-110
Identities = 294/332 (89%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 3302 TCTTCAAATGGAGCGAAGAGACTAATGAAGGTAATAGATGTCATCCCACTAGTGCCTCAT 3361
||||| ||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2810 TCTTCGAATGGAGGGAAAAGAGTAATGAGGGTAATAGATGTCATCCCACTAGTGCCTCAT 2869
Query 3362 TCGAATTCTACCTTACTGATGAAACCGAAAGAAAACTAGAATGCTGCGAGATTTTAAGGT 3421
| |||||||||||||| |||||||| ||||| ||||||||||||||| || | ||||||
Sbjct 2870 TTGAATTCTACCTTACCGATGAAACTGAAAGGAAACTAGAATGCTGCAAGGTGATAAGGT 2929
Query 3422 GTGGGATGAATTTTTTATATGCTCGAGATGAGAACGACCGTAAATTCCAGGGAATACGGG 3481
|||| |||| ||| |||||||||| |||||| || ||||||| ||||||||||||||||
Sbjct 2930 GTGGTATGAGTTTGTTATATGCTCCAGATGAAAATGACCGTAGTTTCCAGGGAATACGGG 2989
Query 3482 TTACAGACACTGTTGAGCGTACATCTAGTGAGGC-TCTTGTAACCATTCGAGGTCAGTCC 3540
|| |||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 2990 TTGCAGACAATGTTGAGCGTACATCTAGTGA-GCTTCTTGTGACCATTCGAGGTCAGTCC 3048
Query 3541 CACTCACGGATTGAAGAGAGAAGATATGGCAGAA-TAAGAGATGAAATCATGGATATGAC 3599
||||||||||||||||| |||||| |||||| || | |||||||||||| |||||||||
Sbjct 3049 CACTCACGGATTGAAGAAAGAAGAAATGGCA-AAGTGAGAGATGAAATCCTGGATATGAG 3107
Query 3600 TGGATCCTCCATGATAGGAGGTCCCGAGTCTT 3631
|| |||| ||||||||||||| ||| |||||
Sbjct 3108 TGTTTCCTACATGATAGGAGGTTCCGGGTCTT 3139
Score = 374 bits (202), Expect = 4e-102
Identities = 290/332 (87%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 2737 CTACAGTACT-TAGATGCTCATGGGTGTGGTTCTCTGGAAAATGTTTCAAAACCACTAAC 2795
||||| || | |||||||||||||||||| |||||||||||| || || || || | ||
Sbjct 2482 CTACACTA-TGTAGATGCTCATGGGTGTGTTTCTCTGGAAAAAGTCGCAGAATCAGTGAC 2540
Query 2796 GA-TTCCTCTCGTAACCGAGAGGATGCATACTACTTTCATTTTTACGGATTGCTTCAAGC 2854
| |||| || ||||| || |||||||||||||| |||||||| ||| ||||||||||||
Sbjct 2541 -ACTTCCCCTAGTAACTGATAGGATGCATACTACATTCATTTTCACGAATTGCTTCAAGC 2599
Query 2855 TGAACCAAGCGGAGAAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2914
| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2600 TAAACCGAGCTGAGCAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2659
Query 2915 CAAGGACATCTCGTCATCATAATC-ATAAGGGACTACTTCTGGATCCTCTGGTTGCCGTT 2973
|||||||||||| ||| ||||| | ||||||||||| |||| || ||||||||||| |||
Sbjct 2660 CAAGGACATCTCTTCAGCATAA-CAATAAGGGACTAGTTCTAGAACCTCTGGTTGCTGTT 2718
Query 2974 TGCTTTCCAGGACA-TGACATACCCTCATGGTTCTCCCATCAAAAAATGGGATCTTTGAT 3032
|| ||||||||| | ||| ||||||||||||||| |||||| | ||||||||||||||
Sbjct 2719 TGTTTTCCAGGA-AGTGAGATACCCTCATGGTTCAGCCATCAGAGGATGGGATCTTTGAT 2777
Query 3033 AGAAACCGACCTGCTTCCACACTGGTGTAACA 3064
||||||||||||||||||||||||||| ||||
Sbjct 2778 AGAAACCGACCTGCTTCCACACTGGTGCAACA 2809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159765691454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5