BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19520.1
Length=5463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946227 jgi|Araly1|946227|scaffold_702456.1 285 2e-75
Ahg915658 jgi|Araly1|915658|Al_scaffold_0008_409 135 3e-30
> Ahg946227 jgi|Araly1|946227|scaffold_702456.1
Length=256
Score = 285 bits (154), Expect = 2e-75
Identities = 174/184 (95%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 5081 CCATTGGTGGTTGTGTAGGATGCTTCTACATGGGTCAAAATCAAGGGATAACTAAAGCTG 5140
|||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 73 CCATTGGTGGTTGTTTAGGATGCTACTACTTGGGTCAAAATCAAGGGATAGCTAAAGCTG 132
Query 5141 GCGGTGGCCGGACAATGCCAACCGCTTACCCGGCTGCACCACAAGCCAATCAAGGTTACA 5200
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 133 GCGGTGGCCTGACAATGCCAACTGCTTACCCGGCCGCACCACAAGCCAATCAAGGTTACA 192
Query 5201 ATGCTGGAGCTCAACCTTACCCTCCTACGGCGTATGCTGTCTAATCATTCTGTTAATTCC 5260
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 193 ATGCTGGAGCTAAACCTTACCCTCCTACGGCGTATGCTGTCTAATCATTCTGTTTATTCC 252
Query 5261 CTGT 5264
|||
Sbjct 253 ATGT 256
> Ahg915658 jgi|Araly1|915658|Al_scaffold_0008_409
Length=3399
Score = 135 bits (73), Expect = 3e-30
Identities = 549/769 (71%), Gaps = 72/769 (9%)
Strand=Plus/Plus
Query 3367 GCTTGCAGCTTCTGTCTACCTTCACCT-ACAAGTCGAG-ATTCCAAACTTTATCTACAAC 3424
|||| |||||||||| | || |||| | || || || ||||||||||| |||| ||||
Sbjct 2554 GCTTTCAGCTTCTGTGTGCCCTCACATGGGAA-TC-AGTATTCCAAACTTGATCTGCAAC 2611
Query 3425 CAGGATCTTCAACAATGATTA-TTCTAAATCCAAAAACGA-GAAGTACGCTCGTGGGCTT 3482
|||||| ||| ||||| | |||||||| || ||| ||||| || |||||
Sbjct 2612 CAGGATTTTCTGTAATGA-CACGACTAAATCCTTCTTGGAGGAA-CACGCTTGTAGGCTT 2669
Query 3483 TGCAATATTAGTTGAAGTTTCATTCTCAAAGGATTTTC-ATGATACTGCTGGTTTAGGCT 3541
||| || | || ||||| |||| || |||| || | |||||| ||||||| |||
Sbjct 2670 TGCTATGCTGGTGGAAGTCGCATTTTCGGAGGA-TTACTGTGATACAACTGGTTTCGGCA 2728
Query 3542 TTAGGTGTGTTTGCAGATGGAATGACAAAAAAGGCCA-TGCTCATAAGCG-T-GATAA-T 3597
|||| ||||||||||||||||| |||| ||||||| | ||||| || | | || ||
Sbjct 2729 TTAGTTGTGTTTGCAGATGGAAAAACAAGGAAGGCCACT-CTCAT-AG-GATAGA-AAGA 2784
Query 3598 ATTTTTCATTGCTGGGCTCCAGGCG-AAG-TTGTTCCTAAGATTAACGACGATCACATGT 3655
| | | ||||| ||||||| ||| | ||| || || | | | || | ||||| ||||
Sbjct 2785 AATCTGCATTGTTGGGCTCTAGG-GAAAGCTT-TT-C--A-A--AA-G--GATCATATGT 2833
Query 3656 TTGTCTTTTTTGATCTTAAAATGCATCCAAGTATATTATTTGAAGGAGATGTCTTCGGTA 3715
||||||| |||||| | || |||| |||||| || || ||||||| ||| | | ||
Sbjct 2834 TTGTCTTCTTTGATGTCAACATGCGTCCAAG--TACTA-ATGAAGGAAATGACCCCAATA 2890
Query 3716 TCTTGGCTGATCTAGTTGTCTTTGAAATATTCCCGGTCAACAAGCAGGAGATGCATGTAG 3775
||| ||||||| ||||||| ||||| | || || ||||||| ||| | | || | |||
Sbjct 2891 TCTGGGCTGATTTAGTTGTTTTTGAGTTCTTTCCTATCAACAAACAGAAAAAGCCTCTAG 2950
Query 3776 GCGATAGTTGCACTA-T-AACAAAATGTGGAGTCTATGTGATTAA-TGATGCAGCTGGCA 3832
||| ||||||| | | || || ||| |||||| ||| | ||| || |||| |||| |
Sbjct 2951 ATGATTGTTGCAC-AGTGAA-AAGATGCGGAGTCCGTGT-AATAACTGCTGCAACTGGTA 3007
Query 3833 GCT-CAAG--TGGA-AACACGATGACCCCACAATGTTCTTCAATGGATTC-ACTGAAGCT 3887
| | |||| | || |||| | | | || | || | | | || | | ||||| |
Sbjct 3008 G-TACAAGCCTTGAGAACA-TTTTA---C-CAGTTTTGTCCTCT-AATCCGA-TGAAG-T 3058
Query 3888 TTTAGATGGTAAAGGTAAAAAGAGATTAAGAGTTAACTATGCTGGTTTAAAACAAAGAGA 3947
||| |||| || | || ||| | | ||||| ||||||| ||||||| | | | |||
Sbjct 3059 TTT--CTGGT-AATG-AAGAAGTG-TGGAGAGTCAACTATGATGGTTTACAGGAGATAGA 3113
Query 3948 AAAAGCTTTATTTCTTTACATAGCATGTTTGCTCGGTGGTGAGAAGGCTGATTTGCTAGC 4007
||||||||||||||||||||||||||||| || || ||| | | || |||| | ||
Sbjct 3114 TAAAGCTTTATTTCTTTACATAGCATGTTTTTTCAATGACGAGGATGTTGGTTTGGTGGC 3173
Query 4008 ACAATTTCTTGCTAG--T-ACTGACTTTGTAA-TTGAGTCTACG--CTCGAAGA-CTTAG 4060
|| | || |||||| | | |||| | | | || ||| || | ||| ||| |||||
Sbjct 3174 ACCACTTATTGCTAACATTATTGACATGG-ACGTT-AGT-TATGGGCTC-AAGGTCTTAG 3229
Query 4061 CTGGCAGGTATCTCATA-GATATATCTTCCAATGGGGAAGTAATGATGC 4108
| | |||| ||||||| | | |||||||||| |||||| || ||||||
Sbjct 3230 CCGATAGGTCTCTCATAAG-TGTATCTTCCAACGGGGAAATAGTGATGC 3277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 206880966828
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5