BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19540.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492911 jgi|Araly1|492911|fgenesh2_kg.7__2344__AT4G19540.1 1755 0.0
> Ahg492911 jgi|Araly1|492911|fgenesh2_kg.7__2344__AT4G19540.1
Length=1086
Score = 1755 bits (950), Expect = 0.0
Identities = 1046/1092 (96%), Gaps = 8/1092 (1%)
Strand=Plus/Plus
Query 126 TCTCTCCCTATGGCCACCGTCGCGCTTCTTAGGTCTCTCCGCCGCCGTGAACTCCACGCA 185
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 TCTCTCCCTATGGCCACCGTCGCGCTTCTTCGGTCTCTCCGCCGCCGTGAACTACACGCA 60
Query 186 GCTCACATCTCTGCATATAAATTCAGTTCTGCTAGCGCCGGCGGGAGGACGACGGAGCTC 245
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCCCATCTCTGCATACAAATTCAGTTCTGCTAGCGCCGGCGGGAGGACGACGGAGCTC 120
Query 246 CGACTACACGGAGTCAAAGATATCATCGCCGTTGCGTCTGGTAAAGGCGGAGTTGGAAAG 305
|| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGTTACATGGAGTCAAGGACATCATCGCCGTTGCGTCTGGTAAAGGCGGAGTTGGAAAG 180
Query 306 TCTTCAACAGCTGTAAACTTAGCTGTTGCATTGGCCAAC-AAATGTGAGCTGAAGATTGG 364
||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 181 TCTTCGACAGCTGTAAACTTAGCTGTTGCATTGGCC-ACTAAATGTGAACTGAAGATTGG 239
Query 365 ATTGCTTGATGCGGATGTATATGGACCATCTGTTCCTATCATGATGAATATCAATCAAAA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTGCTTGATGCGGATGTATATGGACCATCTGTTCCTATCATGATGAATATCAATCAAAA 299
Query 425 GCCTCAAGTTAACCAAGATATGAAGATGATTCCAGTTGAGAACTATGGAGTTAAATGCAT 484
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GCCTCTAGTTAACCAAGATATGAAGATGATTCCAGTTGACAACTATGGAGTTAAATGCAT 359
Query 485 GTCAATGGGACTTCTTGTTGAAAAAGATGCACCACTTGTCTGGAGAGGTCCTATGGTAAT 544
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCAATCGGACTCCTTGTTGAAAAAGATGCACCACTTGTCTGGAGAGGTCCTATGGTAAT 419
Query 545 GAGTGCTCTTGCTAAGATGACAAAAGGAGTTGATTGGGGAGATCTTGATATTCTCGTTGT 604
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 420 GAGTGCTCTAGCTAAGATGACAAGAGGAGTTGATTGGGGAGATCTTGATATTCTTGTTGT 479
Query 605 TGATATGCCACCTGGAACCGGTGATGCTCAAATCTCCATATCCCAAAACCTGAAACTCTC 664
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 TGATATGCCTCCTGGAACGGGTGATGCTCAAATCACCATATCCCAAAACCTGAAACTCTC 539
Query 665 GGGTGCTGTAATTGTATCAACTCCACAAGATGTTGCGCTTGCTGATGCTAATAGAGGAAT 724
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AGGTGCTGTAATTGTATCAACTCCACAAGATGTTGCGCTTGCTGATGCTAATCGAGGAAT 599
Query 725 CTCCATGTTCGACAAAGTTAGAGTACCTATTTTGGGACTTGTAGAGAACATGAGTTGCTT 784
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 600 CTCCATGTTTGACAAAGTTAGAGTACCTATCTTGGGACTTGTGGAGAACATGAGTTGCTT 659
Query 785 CGTTTGTCCTCACTGTAATGAACCTTCTTTCATATTTGGGAAAGAAGGAGCACGCCGCAC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGTTTGTCCTCACTGTAATGAACCTTCTTTCATATTTGGGAAAGAAGGAGCACGCCGCAC 719
Query 845 TGCTGCAAAGAAGGGTTTGAAACTTATCGGTGAGATTCCACTGGAAATGTCGATAAGAGA 904
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TGCTGAAAAGAAGGGTCTGAAACTTATCGGTGAGATTCCACTGGAAATGTCGATCAGAGA 779
Query 905 AGGTTCTGATGAAGGTGTTCCTGTAGTTGTTTCTTCACCGGGTTCTATAGTGTCAAAAGC 964
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 AGGTTCTGATGAAGGTGTTCCTGTGGTTGTTTCTTCACCGGGTTCTATAGTGTCAAAAGC 839
Query 965 TTATCAAGATCTAGCTCAAAACGTGGTGAAAGGACTCAAGGAGCTAAGAGAGAATCCAGA 1024
|||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TTATGAAGATCTAGCTCTAAACGTGGTGAAAGGACTCAAGGAGCTAAGAGATAATCCAGA 899
Query 1025 TAATGAGATTCAGATGAAGCTAAATGTTCCTCATTCTAGCCACTCATCATAGAACAAACA 1084
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 900 GAATGAGATTCAGATGAAGCTAAATGTTCCTCATTCTAGCC-C--ATCATAAAACAAACA 956
Query 1085 CTTATATATGACCAAAGTTTTGTCTTGCTGCCTCACTTTCTCATATTTTTGTACCAAAGA 1144
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 957 CTTATATATGACCAAAGTTTTGTCTTGCTGCCTCACTTTCTCAGATTTTTGTACCAAAGA 1016
Query 1145 GAATGTTTGCAAAGAGAAGAATGTAATTTGCT-GATGATAAAAGCAATAGAGCCAGTCAC 1203
|| ||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1017 GAGTGTTTGCGAAGAGAAGAATGTA-TTTG-TAGATGATAAAAGCAATAGAGCCAGTCAC 1074
Query 1204 TGTTTATGAACC 1215
||||||||||||
Sbjct 1075 TGTTTATGAACC 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5