BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19550.2
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354800 jgi|Araly1|354800|fgenesh1_pg.C_scaffold_7001973 741 0.0
> Ahg354800 jgi|Araly1|354800|fgenesh1_pg.C_scaffold_7001973
Length=693
Score = 741 bits (401), Expect = 0.0
Identities = 478/514 (93%), Gaps = 9/514 (2%)
Strand=Plus/Plus
Query 346 GGTTGCTGAGAATCTAAGTAATAATAAGGAATTCATTCTGAAGAAGAGAGCATGGGAATT 405
||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 189 GGTTGCTGATAATCTAACTAATAAAAAGGAATTCATTCTGAAGAAGAGAGCATGGGAATT 248
Query 406 GATGAACCCTGAATACCAGAAGGGAAAATATAGGAAAGTCACCACTAGGAAAAAGAAGGA 465
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 249 GATGAACCCTGAATACCAAAAGGGAAATTATAGGAAAGTCACCACTGGGAAAAAGAAGGA 308
Query 466 TCCTGCTAATAAGATTGCTCCTAGTAAGAAAACTTCTGCAACCAAAACCGAAAGCAATGC 525
|||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 309 TCCTGCTAATAAGACTGCTCCTGGTAAGAAAACTTCTGCAACCAGAACTGAAAGCAATGC 368
Query 526 AGAAACTGAAAATAAAAAGAGACCGAGTTTGGAAATCAATTACAATGTCTTGGATAAGCT 585
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 369 AGGGAGTGAAAATAAAAAGAGACCGAGTTTGGAAATCAATTACGATGTCTTGGATAAGCT 428
Query 586 ATTTGATCCTGAGAACTCTCCCAAGAGGGCAAAGCTAGATAAACCAGTTGTTGTTGGTGA 645
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 429 ATTTGATCCTGAGAACTCTCCGAAGAGGGCGAAGCTAGATAAACCA---GTTGTTGGTGA 485
Query 646 CCAAATAGAATATTCAAAGCAAAACAGTGAAGAAAGCCTTTTGAAATCTCAGTATTCTga 705
||||| |||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 486 CCAAACGGAATATTCAAAGCAAAGCAGTGAAGAAAGCCTTTTGAAACCACAGTATTCT-- 543
Query 706 agaagaagaagaagaagcagaagaaCCAGACTGGAATGAGGATTACAGTAATGAAGATGC 765
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ---A-ACGAAGAAGAAGCAGAAGAACCAGACTGGAATGAGGATTACAGTAATGAAGATGC 599
Query 766 GTATAGAGGAAACGAAGAATGCTACGGCAATGAGAATCTTGAATTTGAAGATCTAGATGA 825
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 600 GTATAGAGGAAACGAAGAATGCTACGGCGATGAGAATCTTGAATTTGAAGATCAAGATGA 659
Query 826 CGATGAAGAAGATGATGAAGGGGTAATTTGGTGA 859
|| ||||||||| ||||||||||||||||||||
Sbjct 660 AGAAGAAGAAGATAATGAAGGGGTAATTTGGTGA 693
Score = 161 bits (87), Expect = 8e-39
Identities = 101/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 160 AAGTTATTGGCTAGAAACCTAAAAGTATATGGCAACAAAGGAGTTTTTCCTTCTCGACAG 219
|||| |||||||||||| | |||||| | ||||||||||||||||||||||| | |||||
Sbjct 82 AAGTCATTGGCTAGAAATCGAAAAGTCTGTGGCAACAAAGGAGTTTTTCCTTGTAGACAG 141
Query 220 TCTAAAGGTGATCTTGCAGAGGACTTATCTGATATCAGTGATGCTGAG 267
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TCTAAAGGTGATCTTGCAGAGGACTTATCTGATATCAGTGATGCTGAG 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5