BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19560.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492909 jgi|Araly1|492909|fgenesh2_kg.7__2342__AT4G19560.1 2327 0.0
> Ahg492909 jgi|Araly1|492909|fgenesh2_kg.7__2342__AT4G19560.1
Length=1803
Score = 2327 bits (1260), Expect = 0.0
Identities = 1659/1843 (90%), Gaps = 62/1843 (3%)
Strand=Plus/Plus
Query 44 TTCGTTTACGCGTTTCTTTTTCTCGTTGAGTGCATTTGTTCTAGAATTTGTGTATTAGTC 103
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1 TTCGTTCACGCGTTTCTTTTTCTCGTTGAGTGCAACTGTTCTAGAATTTGTGTAACAGTC 60
Query 104 TAAGAAGATCATTACTGTTTA-C-ATACCACCAATGGATGAAGCATTGAATGAGAATGCT 161
| ||||| |||| || | || | || | | ||||||||| || |||||||
Sbjct 61 T---AAGAT--TTAC---ATACCAAT-GGAAGAA-GCA-GAAGCATTGCCTGGGAATGCT 109
Query 162 TCTGGCAGTGAGAGCGATGCTTCGTCAGTCGCGAGCAATCTCCATGATGATGAGATTATC 221
||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 110 TCTGGCAATGAGAGCGATGTTTCGTCAGTCACTAGCAATCTCCATGATGATGAGATTATC 169
Query 222 CCTTGGTTCTTTTCAAGAGAAGAGATCGAAAGAAACTCACCGTCAAGGCGAGATGGTATT 281
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 170 CCTTGGTTTTTTTCAAGAGAAGATATCGAAAAAAACTCACCGTCAAGGCGAGATGGTATT 229
Query 282 GATTTGAAGACTGAAACTCGCCTACGCGACTCATACTGTACATTTTTGG-AAATACTCGG 340
|||||||| | ||||||||||||||| |||| ||||||| |||||||| |||| |||||
Sbjct 230 GATTTGAACAAAGAAACTCGCCTACGCCACTCTTACTGTATATTTTTGGAAAAT-CTCGG 288
Query 341 CGAAAGATTGAAAGTTCCCCAGGTAACAATAGCCACTGCTATATTTTTCTGTCACCGATT 400
|||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||
Sbjct 289 TAAAAGATTGAAAGTTCCTCAGGTAACGATAGCCACTGCTATAGTATTCTGTCACCGATT 348
Query 401 CTTCCTTCGTCAATCACATGCGAAAAATGACAGACAGACGATTGCAACAGTCTGCATGCT 460
|||| ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||
Sbjct 349 CTTCGTTCGTCAATCACACGCGAAGAATGACAGTCGGACGATTGCAACAGTCTGCATGCT 408
Query 461 CCTAGCTGGGAAGGTTGAGGAAACTCCAGTGACATTAGAAGACGTTATTATTGCCTCATA 520
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 409 CTTAGCTGGGAAGGTTGAGGAAACTCCAGTGCCATTAAAAGACGTTATTATTGCCTCTTA 468
Query 521 TGAGAGAATACACAAGAAGGATCTTGCTGGTGCTCAGAGAAAGGAAGTATATGACCAACA 580
||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 469 TGAGAGAATGCACAAGAACGATCTTGCTGGCGCTCAGAGAAAGGAAGTATATGAGCAACA 528
Query 581 GAAAGAGCTTGTATTAATCGGAGAGGAGCTTGTTCTTTCTACATTGAACTTTGATCTCTG 640
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAAGAGCTTGTATTAATCGCAGAGGAGCTTGTTCTTTCTACATTGAACTTTGATCTCTT 588
Query 641 TATT-AGCCACCCTTATAAACCTCTTGTAGAAGCAATTAAGAAATATATGGTTGAAGATG 699
|||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 TATTCA-CCACCCTTATAAACCTCTTGTAAAAGCAATTAAGAAATATATGGTTGAAGATG 647
Query 700 CTAAGACCCAACTTGCCCAATTTGCATGGAATTTTGTCAACGATTGTCTGCGAACGACAC 759
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTAAGACCCGACTTGCCCAATTTGCATGGAATTTTGTCAACGATTGTCTGCGAACGACAC 707
Query 760 TCTGCCTGCAGTATCAGCCTCATCACATAGCGGCAGGTGCTATTCTCCTTGCTGCTGAGC 819
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TCTGCCTGCAGTATAAGCCTCATCACATAGCGGCAGGTGCTATTCTCCTTGCTGCTGAGC 767
Query 820 TGCCAACAGTGGACTTACAATCTTACAGAGAGGTCTTGTGTCAAGAGTTTGATATCACAC 879
||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 768 TGCTAACAGTGGACATACAATCATACGGAGAGGTCTTGTGTCAAGAGTTTGATATCAAAC 827
Query 880 CTTGTCAATTAGAAGATATCCGAGGCCAAATACTTGAGCTTTATGAGAGAA----T-T-C 933
| ||||| ||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 828 CCTGTCAGTTAAAAGATATCCGAGGCCAAATACTTGAGCTTTATGAGAGAAAGAATATTC 887
Query 934 CTACATCTCAAGAAAGCAAAGTTGAAAGTAGTGGTGGTGTGGCCGTAGTGCATCAACCTA 993
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 888 CTACATCTCAAGAAAGCATAGTTGAAAGTAGTGGTAATGTAGCCGTAGTGCATCAACCTA 947
Query 994 TATCTAGAGATATGGCTTCCACAGAGAAGTGTCCAAGTTCTGATATTGAAGGAGGCTCAT 1053
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 948 TATCCAGAGATATGGCTTCCACAGAGAAGTGTTCAAGTTCTGATATTGAAGAAGGCTCAT 1007
Query 1054 CGCAAGTCAATCTAAGCCAGAGCGATGATCATTCAGTCCACGATGGGTCTAGGTCTGAAG 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1008 CGCAAGTCAATCTAAGCCAGAGCGATGATCATTCAGTCCACGATGGGTCTAGGCCTGAAG 1067
Query 1114 GAATTGGAGAGGTGAACTCAGAAAGTGAAGCTCAAAAGAATCTACAGGACCATTCTGTTG 1173
|||||||||||| ||||||||||||||||||| ||||||||| | | |||||||||||||
Sbjct 1068 GAATTGGAGAGGAGAACTCAGAAAGTGAAGCTGAAAAGAATCGAGATGACCATTCTGTTG 1127
Query 1174 GTAATATAATGGTTGAGAAAAGTGATGATGTTGGGGTCGTCCAATTGAAGAAAGACTTGC 1233
||| |||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1128 GTACTATAATGGTTGAGACAAGTGATGGTGTTGGGGTCATCCAATTGGAGAAAGACTTGC 1187
Query 1234 AACTGCATCAAGAGGAGGTTGAGTCTAAACAAGAGAAAGATAAGAAGTCATTTGA-AAAA 1292
||||||||||| |||| || ||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1188 AACTGCATCAAAAGGAAGTGGAGGCTAAACAAGAGAAAGATAAGAAGTCATCTGACAAAA 1247
Query 1293 GATATAACGAAAATAGATTTGATGGATGAGAAGGATTTGACTGAAAGTGAAGTAGAAGAT 1352
|||||| |||||| || ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1248 -ATATAAAGAAAATGGAGTTGATGGATGAGAAGGATTTGACTGAAAGAGAAGCAGAAGAT 1306
Query 1353 GAG-ATTAACAAAACAATGCAGAC-AGGAAGACAAATCTTTATGAAAGTTGAGGACCCTG 1410
||| || ||||||||||||||||| || |||||||| |||||||||||| |||||||||
Sbjct 1307 GAGGAT-AACAAAACAATGCAGACGAG-AAGACAAAGCTTTATGAAAGTCAAGGACCCTG 1364
Query 1411 ATGACAACATGACTGTCGAACACAGTGAGATTCGAAATGCAAACAACTCAGGTGTTGATG 1470
||| |||| || ||| |||||||||||||||| | |||||||| ||||||||| |||||
Sbjct 1365 GTGAGAACACGAGTGTTGAACACAGTGAGATTCTAGATGCAAACCACTCAGGTGATGATG 1424
Query 1471 ATGAATTGGTGGCTGATACTTGTCTGATAAATGACAGTGATTTGTAGGAAATGGTCGTTG 1530
||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 1425 GTGAATTGGTAGCTGATACTTGTCTGATAGATGACAAAGATTTGAAGGAAATGGTCGTTG 1484
Query 1531 AAGATGGTGAAATAGTGGTTTAGATGTTTAGCTCAGAAGCTTTCGAAGAGAACCAGTTTT 1590
|||||||||||||| |||||||||| ||||||| || |||||| |||||||||| |||||
Sbjct 1485 AAGATGGTGAAATACTGGTTTAGATTTTTAGCTGAGGAGCTTTGGAAGAGAACCGGTTTT 1544
Query 1591 --GGTCCTGAGAAGAGCTTTTTAACTAGGTG---AGTTTTGGAGAGACAACTATTATATG 1645
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1545 TTGGTGCTGAGAAGAGCTTTTTAACTAGGTGGTGAGTTTTGGAGAGACAACTATTATATG 1604
Query 1646 TTTTCTCCAAAAGACGAAGGTTTAGTTTCAAGATTTGTGGTAGATCATGACTT-TGAAT- 1703
|||| | | |||||||||||||||| |||||||| ||||||| | |||
Sbjct 1605 TTTT--------G--G----TTTAGTTTCAAGATTTTTGGTAGATTATGACTTAT-AATT 1649
Query 1704 CTTTTCTCA-CTCTTAAGACTTTTAACTACAGTGGAACGAGAGCAAGTTCTCCTTGCATC 1762
||||| ||| |||| |||||||| ||||||| |||||| | |||||||||||||||||||
Sbjct 1650 CTTTTTTCATCTCT-AAGACTTT-AACTACACTGGAACAAAAGCAAGTTCTCCTTGCATC 1707
Query 1763 GTCAATGTGTTGTGTAATGTCCTAAAGTTCTCTTAAACATTGTGGTATAGTTTCAAGATT 1822
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1708 GTCAATGTGT-----AATGTCCTAAC-TTCTCTTAAACATTGTGGTGTAGTTTCAAGATT 1761
Query 1823 TGTGGTAGATCCTTTTCAT-TCAAGTAAATTGGGTTTCATGAC 1864
||||| ||||||||||| | ||||| |||||||||||||||||
Sbjct 1762 TGTGGGAGATCCTTTTC-TGTCAAGAAAATTGGGTTTCATGAC 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5