BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19570.1 Length=1892 Score E Sequences producing significant alignments: (Bits) Value Ahg946223 jgi|Araly1|946223|scaffold_702452.1 1160 0.0 Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1 357 2e-97 Ahg946222 jgi|Araly1|946222|scaffold_702451.1 67.6 3e-10 > Ahg946223 jgi|Araly1|946223|scaffold_702452.1 Length=1102 Score = 1160 bits (628), Expect = 0.0 Identities = 966/1120 (86%), Gaps = 60/1120 (5%) Strand=Plus/Plus Query 633 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCATAAACCTAAGTCTAAGCCTGAT 692 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 3 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCCTAAACCTAAGCCTAAGCCTGAT 62 Query 693 ATTTCATTGACAACGGTGAAAGTTGGAACCTTTTGGACGGTTTGCAATAGATGCAAGACG 752 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 63 ATTTCATTGACAACGGTGAAAGTCGGAACCTTTTGGACAGTTTGCAATAGATGCAAGACA 122 Query 753 TATTGTGAGTTTATGAGGGCTAGTTGTCTTAATAAGACTGTACCTTGTCCAAACTGCGGT 812 |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 123 TATTGTGAATTTATGAGGGCTAGTTGTCTTAATAGGACCATACCTTGTCCAAACTGCGGT 182 Query 813 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAGTCAATGGGAGGCTAGTCATCAGA 872 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 183 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAATCAATGGGAGGCTAGTCATCAGA 242 Query 873 TTGAGTCCTTGTAATCAGTCAACATGGAAAAA-AGCAAGTGATGATACTTCTTCAACTTC 931 ||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||| Sbjct 243 CTGAGTCCTTCTAATCAGTCAACATGGAAAAGCA-CAAGTGAT-A--CTTCTTCAACTTC 298 Query 932 AGCAATGGCAAA-GACTGTACCCGAAAGAGTTAAAAGATGGTTTGACCCTATGCCTGAGA 990 |||||||||||| | ||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 299 AGCAATGGCAAAAG-CTGCACCCGAAAGAGTGAAAAGATGGTTTAACCCTATGCCTGAGC 357 Query 991 TGGATTCTTCAACGCAAAAA-A--T-----T-GGTACGTTTTGGACAGTGTGCAGTAGAT 1041 | |||||||| ||| ||||| | | | ||||| |||||||||||||||| ||||| Sbjct 358 TTGATTCTTCGACGGAAAAAGAGATAAAACTCGGTACCTTTTGGACAGTGTGCAATAGAT 417 Query 1042 GCAAGACACATTGTAAGTTGGTGAGGGCTAATCATCTTAACAAGACCTTCCCTTGTCCTA 1101 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 418 GCAAGACACATTGTAAGTTGGTGAGGGCTAATTATCTTAACAAGACCTTCCCTTGTCCAA 477 Query 1102 ACTGCAGTCAGGAATTTGTTGCGGCCGAGATGATTATAGAGGTAATCAATGGGGGTCCAG 1161 |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 478 ACTGTAGTCAGGAATTCGTTGCGGCCGAGATGATTATAGAGATAATCAATGGGGGTCCAG 537 Query 1162 TCATAAAATTGAGTCCCTCTGTGCAGTCAAATAGCAAAAGGA-CA------C--GTG-AT 1211 |||||||||||||||||||||| ||||||||||||||||| | || | ||| | Sbjct 538 TCATAAAATTGAGTCCCTCTGTTCAGTCAAATAGCAAAAGTAGCAAAAGGACAAGTGCA- 596 Query 1212 GCTTCTTCCACAACCTCAGCATCTGATAAGGCACAGAGGACTGCATATCAAAAAGAAGAA 1271 ||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||| Sbjct 597 GCTTCTTCCACAACCTCAGCATCTGATAACGCA-A-AG-ACTGCATATCAAAAAGAAGAC 653 Query 1272 GTTTTGAAAAGAGAAAAGATTGATCCTGATGTTGCGTCTGCTGCTACTGGAGAAAATGTA 1331 ||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| Sbjct 654 GTTTTGAAAAGAGAAAACATTGATCCTGATGTTGCATCTGCTGCTACTGGAGGAAATGTA 713 Query 1332 AAAGTAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAACGAAAACTCTACTACT 1391 | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 714 CAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAACTCTACTACT 773 Query 1392 GAAGAAGG-AATTGTAAAAGAATCAGAGACCCTT-TGCAAGGAGCCGATGACAACAGGAA 1449 |||| ||| ||| ||||||||| ||||||| ||| | | |||||||| |||||||||| | Sbjct 774 GAAGCAGGTAAT-GTAAAAGAAGCAGAGACTCTTGT-CGAGGAGCCGGTGACAACAGGCA 831 Query 1450 ATGAAAACTCTACTACTGAAGAAG-GAAA-TGTAAAAGAAGCAGA-GACCTTTTTCGAGG 1506 ||| |||||||||| |||||| || || | | | ||||||| || || | ||| Sbjct 832 ATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA----C-AGG 886 Query 1507 AGCCGATGACAACAGGCAA-TGTAAAAGAAGTAGAGACCCTTTTCGAGGAGCCGATGACA 1565 | ||| |||| | | | | ||| || |||||| ||||| || |||||||| | Sbjct 887 AA---ATGCCAACC--CTAGTCTTGAAGCAG-AGAGAC--TTTTCAAGAAGCCGATGTCT 938 Query 1566 ACAG-ACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTAC 1624 |||| | | ||||||||||||| |||||| | ||||||||||| ||||||||| | || Sbjct 939 ACAGGAGAC-GAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAAC 997 Query 1625 AGGAGACGAAAACTCTACTCATGAAGCTCAAAG--GCTTTTCAAGAAGCCGATGACAACA 1682 |||| | | |||||||| || |||||| || || |||||| || | ||| |||| Sbjct 998 AGGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGAT---ATGGCAACG 1054 Query 1683 GGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTT 1722 |||||||||| ||| | |||||||| ||||| |||||| Sbjct 1055 GGAAATGCAATCTCGACTCTTGAAGT--AGAGAGGCTTTT 1092 Score = 494 bits (267), Expect = 1e-138 Identities = 348/385 (90%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 1397 AGGAATTGTAAAAGAATCAGAGACCCTTTGCAAGGAGCCGATGACAACAGGAAATGAAAA 1456 ||||| |||| | ||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 704 AGGAAATGTACAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAA 763 Query 1457 CTCTACTACTGAAGAAGGAAATGTAAAAGAAGCAGAGACCT-TTTTCGAGGAGCCGATGA 1515 |||||||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||| Sbjct 764 CTCTACTACTGAAGCAGGTAATGTAAAAGAAGCAGAGA-CTCTTGTCGAGGAGCCGGTGA 822 Query 1516 CAACAGGCAATGTAAA----A-----GAAGTAGAGACCCTTTTCGAGGAGCCGATGACAA 1566 |||||||||||||||| | |||| ||||| |||||| || ||||||||| || Sbjct 823 CAACAGGCAATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA 882 Query 1567 CA-GACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTACA 1625 || || |||| ||| ||| || |||||||||||| |||||||||||||||||||||||| Sbjct 883 CAGGA-AATGCCAACCCTAGTCTTGAAGCAGAGAGACTTTTCAAGAAGCCGATGTCTACA 941 Query 1626 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAGAAGCCGATGACAACAGGA 1685 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 942 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAACAGGA 1001 Query 1686 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1061 Query 1746 CAATCTCTACTCTTAAAGTAGAGAG 1770 ||||||| |||||| |||||||||| Sbjct 1062 CAATCTCGACTCTTGAAGTAGAGAG 1086 > Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1 Length=714 Score = 357 bits (193), Expect = 2e-97 Identities = 285/328 (87%), Gaps = 12/328 (4%) Strand=Plus/Plus Query 124 TGGATATTGCTGAGAAGAAACTATCAAAGAATGATTACAACAGAGCGAAAAGATATGC-T 182 |||||||||| ||||||||||| || ||||||||||| | |||| |||| | || | | Sbjct 2 TGGATATTGCCGAGAAGAAACTTTCGGAGAATGATTACGATGGAGCTAAAA-A-ATTCAT 59 Query 183 AAG-AAGGCTCATCG-TATGTATCCAAATCTCGTTGGTTTGGAACAAGTGTTGATAATGA 240 || |||||||| | | |||||||||| || | ||||||||||||||||||||| |||| Sbjct 60 TAGCAAGGCTCA-GGCTTTGTATCCAAAGCTTGATGGTTTGGAACAAGTGTTGATGATGA 118 Query 241 TCGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTACAGAGTTC 300 | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 119 TTGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTATGGAATTC 178 Query 301 TCGGTGTTGATCCTTTAGCTGATGATGAAGCTGTGAAGAAAC-GTTACAGGAAGTTAGCT 359 ||||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||| Sbjct 179 TCGGTGTAGATCCTTTAGCTGATGATGAAGCTGTGAAGAAACAGT-ACAAGAAGTTAGCT 237 Query 360 CTTTTGCTTCATCCTGACAAAAACAGGTTTA-CTGGTGCTGAAGGTGCGTTTAAG-TTGA 417 |||||||| ||||| ||||| |||||||||| | || || ||||| ||||||||| ||| Sbjct 238 CTTTTGCTCCATCCCGACAAGAACAGGTTTAAC-GGCGCGGAAGGCGCGTTTAAGCTTG- 295 Query 418 TTCTAGAAGCTTGGGATCTATTGTCTGA 445 ||||| ||||||||||| |||| ||||| Sbjct 296 TTCTACAAGCTTGGGATTTATTATCTGA 323 > Ahg946222 jgi|Araly1|946222|scaffold_702451.1 Length=748 Score = 67.6 bits (36), Expect = 3e-10 Identities = 40/42 (95%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 1673 GATGACAACAGGAAATGCAAACTCTAATCTTGAAGCGCAGAG 1714 ||||||||||||||||||||||||||||||||| || ||||| Sbjct 702 GATGACAACAGGAAATGCAAACTCTAATCTTGACGCACAGAG 743 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71076397170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5