BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19570.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946223 jgi|Araly1|946223|scaffold_702452.1 1160 0.0
Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1 357 2e-97
Ahg946222 jgi|Araly1|946222|scaffold_702451.1 67.6 3e-10
> Ahg946223 jgi|Araly1|946223|scaffold_702452.1
Length=1102
Score = 1160 bits (628), Expect = 0.0
Identities = 966/1120 (86%), Gaps = 60/1120 (5%)
Strand=Plus/Plus
Query 633 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCATAAACCTAAGTCTAAGCCTGAT 692
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 3 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCCTAAACCTAAGCCTAAGCCTGAT 62
Query 693 ATTTCATTGACAACGGTGAAAGTTGGAACCTTTTGGACGGTTTGCAATAGATGCAAGACG 752
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 63 ATTTCATTGACAACGGTGAAAGTCGGAACCTTTTGGACAGTTTGCAATAGATGCAAGACA 122
Query 753 TATTGTGAGTTTATGAGGGCTAGTTGTCTTAATAAGACTGTACCTTGTCCAAACTGCGGT 812
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 123 TATTGTGAATTTATGAGGGCTAGTTGTCTTAATAGGACCATACCTTGTCCAAACTGCGGT 182
Query 813 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAGTCAATGGGAGGCTAGTCATCAGA 872
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 183 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAATCAATGGGAGGCTAGTCATCAGA 242
Query 873 TTGAGTCCTTGTAATCAGTCAACATGGAAAAA-AGCAAGTGATGATACTTCTTCAACTTC 931
||||||||| |||||||||||||||||||| | |||||||| | |||||||||||||
Sbjct 243 CTGAGTCCTTCTAATCAGTCAACATGGAAAAGCA-CAAGTGAT-A--CTTCTTCAACTTC 298
Query 932 AGCAATGGCAAA-GACTGTACCCGAAAGAGTTAAAAGATGGTTTGACCCTATGCCTGAGA 990
|||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct 299 AGCAATGGCAAAAG-CTGCACCCGAAAGAGTGAAAAGATGGTTTAACCCTATGCCTGAGC 357
Query 991 TGGATTCTTCAACGCAAAAA-A--T-----T-GGTACGTTTTGGACAGTGTGCAGTAGAT 1041
| |||||||| ||| ||||| | | | ||||| |||||||||||||||| |||||
Sbjct 358 TTGATTCTTCGACGGAAAAAGAGATAAAACTCGGTACCTTTTGGACAGTGTGCAATAGAT 417
Query 1042 GCAAGACACATTGTAAGTTGGTGAGGGCTAATCATCTTAACAAGACCTTCCCTTGTCCTA 1101
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 418 GCAAGACACATTGTAAGTTGGTGAGGGCTAATTATCTTAACAAGACCTTCCCTTGTCCAA 477
Query 1102 ACTGCAGTCAGGAATTTGTTGCGGCCGAGATGATTATAGAGGTAATCAATGGGGGTCCAG 1161
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 ACTGTAGTCAGGAATTCGTTGCGGCCGAGATGATTATAGAGATAATCAATGGGGGTCCAG 537
Query 1162 TCATAAAATTGAGTCCCTCTGTGCAGTCAAATAGCAAAAGGA-CA------C--GTG-AT 1211
|||||||||||||||||||||| ||||||||||||||||| | || | ||| |
Sbjct 538 TCATAAAATTGAGTCCCTCTGTTCAGTCAAATAGCAAAAGTAGCAAAAGGACAAGTGCA- 596
Query 1212 GCTTCTTCCACAACCTCAGCATCTGATAAGGCACAGAGGACTGCATATCAAAAAGAAGAA 1271
||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 597 GCTTCTTCCACAACCTCAGCATCTGATAACGCA-A-AG-ACTGCATATCAAAAAGAAGAC 653
Query 1272 GTTTTGAAAAGAGAAAAGATTGATCCTGATGTTGCGTCTGCTGCTACTGGAGAAAATGTA 1331
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 654 GTTTTGAAAAGAGAAAACATTGATCCTGATGTTGCATCTGCTGCTACTGGAGGAAATGTA 713
Query 1332 AAAGTAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAACGAAAACTCTACTACT 1391
| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 CAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAACTCTACTACT 773
Query 1392 GAAGAAGG-AATTGTAAAAGAATCAGAGACCCTT-TGCAAGGAGCCGATGACAACAGGAA 1449
|||| ||| ||| ||||||||| ||||||| ||| | | |||||||| |||||||||| |
Sbjct 774 GAAGCAGGTAAT-GTAAAAGAAGCAGAGACTCTTGT-CGAGGAGCCGGTGACAACAGGCA 831
Query 1450 ATGAAAACTCTACTACTGAAGAAG-GAAA-TGTAAAAGAAGCAGA-GACCTTTTTCGAGG 1506
||| |||||||||| |||||| || || | | | ||||||| || || | |||
Sbjct 832 ATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA----C-AGG 886
Query 1507 AGCCGATGACAACAGGCAA-TGTAAAAGAAGTAGAGACCCTTTTCGAGGAGCCGATGACA 1565
| ||| |||| | | | | ||| || |||||| ||||| || |||||||| |
Sbjct 887 AA---ATGCCAACC--CTAGTCTTGAAGCAG-AGAGAC--TTTTCAAGAAGCCGATGTCT 938
Query 1566 ACAG-ACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTAC 1624
|||| | | ||||||||||||| |||||| | ||||||||||| ||||||||| | ||
Sbjct 939 ACAGGAGAC-GAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAAC 997
Query 1625 AGGAGACGAAAACTCTACTCATGAAGCTCAAAG--GCTTTTCAAGAAGCCGATGACAACA 1682
|||| | | |||||||| || |||||| || || |||||| || | ||| ||||
Sbjct 998 AGGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGAT---ATGGCAACG 1054
Query 1683 GGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTT 1722
|||||||||| ||| | |||||||| ||||| ||||||
Sbjct 1055 GGAAATGCAATCTCGACTCTTGAAGT--AGAGAGGCTTTT 1092
Score = 494 bits (267), Expect = 1e-138
Identities = 348/385 (90%), Gaps = 13/385 (3%)
Strand=Plus/Plus
Query 1397 AGGAATTGTAAAAGAATCAGAGACCCTTTGCAAGGAGCCGATGACAACAGGAAATGAAAA 1456
||||| |||| | ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 704 AGGAAATGTACAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAA 763
Query 1457 CTCTACTACTGAAGAAGGAAATGTAAAAGAAGCAGAGACCT-TTTTCGAGGAGCCGATGA 1515
|||||||||||||| ||| ||||||||||||||||||| || || ||||||||||| |||
Sbjct 764 CTCTACTACTGAAGCAGGTAATGTAAAAGAAGCAGAGA-CTCTTGTCGAGGAGCCGGTGA 822
Query 1516 CAACAGGCAATGTAAA----A-----GAAGTAGAGACCCTTTTCGAGGAGCCGATGACAA 1566
|||||||||||||||| | |||| ||||| |||||| || ||||||||| ||
Sbjct 823 CAACAGGCAATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA 882
Query 1567 CA-GACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTACA 1625
|| || |||| ||| ||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 883 CAGGA-AATGCCAACCCTAGTCTTGAAGCAGAGAGACTTTTCAAGAAGCCGATGTCTACA 941
Query 1626 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAGAAGCCGATGACAACAGGA 1685
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 942 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAACAGGA 1001
Query 1686 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1061
Query 1746 CAATCTCTACTCTTAAAGTAGAGAG 1770
||||||| |||||| ||||||||||
Sbjct 1062 CAATCTCGACTCTTGAAGTAGAGAG 1086
> Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1
Length=714
Score = 357 bits (193), Expect = 2e-97
Identities = 285/328 (87%), Gaps = 12/328 (4%)
Strand=Plus/Plus
Query 124 TGGATATTGCTGAGAAGAAACTATCAAAGAATGATTACAACAGAGCGAAAAGATATGC-T 182
|||||||||| ||||||||||| || ||||||||||| | |||| |||| | || | |
Sbjct 2 TGGATATTGCCGAGAAGAAACTTTCGGAGAATGATTACGATGGAGCTAAAA-A-ATTCAT 59
Query 183 AAG-AAGGCTCATCG-TATGTATCCAAATCTCGTTGGTTTGGAACAAGTGTTGATAATGA 240
|| |||||||| | | |||||||||| || | ||||||||||||||||||||| ||||
Sbjct 60 TAGCAAGGCTCA-GGCTTTGTATCCAAAGCTTGATGGTTTGGAACAAGTGTTGATGATGA 118
Query 241 TCGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTACAGAGTTC 300
| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 119 TTGATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTATGGAATTC 178
Query 301 TCGGTGTTGATCCTTTAGCTGATGATGAAGCTGTGAAGAAAC-GTTACAGGAAGTTAGCT 359
||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 179 TCGGTGTAGATCCTTTAGCTGATGATGAAGCTGTGAAGAAACAGT-ACAAGAAGTTAGCT 237
Query 360 CTTTTGCTTCATCCTGACAAAAACAGGTTTA-CTGGTGCTGAAGGTGCGTTTAAG-TTGA 417
|||||||| ||||| ||||| |||||||||| | || || ||||| ||||||||| |||
Sbjct 238 CTTTTGCTCCATCCCGACAAGAACAGGTTTAAC-GGCGCGGAAGGCGCGTTTAAGCTTG- 295
Query 418 TTCTAGAAGCTTGGGATCTATTGTCTGA 445
||||| ||||||||||| |||| |||||
Sbjct 296 TTCTACAAGCTTGGGATTTATTATCTGA 323
> Ahg946222 jgi|Araly1|946222|scaffold_702451.1
Length=748
Score = 67.6 bits (36), Expect = 3e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1673 GATGACAACAGGAAATGCAAACTCTAATCTTGAAGCGCAGAG 1714
||||||||||||||||||||||||||||||||| || |||||
Sbjct 702 GATGACAACAGGAAATGCAAACTCTAATCTTGACGCACAGAG 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5