BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19580.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1 484 4e-136
> Ahg492908 jgi|Araly1|492908|fgenesh2_kg.7__2341__AT4G19580.1
Length=714
Score = 484 bits (262), Expect = 4e-136
Identities = 316/341 (93%), Gaps = 8/341 (2%)
Strand=Plus/Plus
Query 600 TGAGTCTGACCCTGAACCTGATTCTTCATGGAAACAGAAGAAACCACGAAAACAGGAGGA 659
||||||||| |||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 381 TGAGTCTGAGCCTGAACCTGATTCTTCATGGAAACAGAAGAAACCACGCAAACCGAAGGA 440
Query 660 AGACATTACCTTTTGGACAGTGTGCAAAAACAATAAGTGCAATACACATTGTAAATTAGG 719
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 441 AGTCATTACCTTTTGGACAGTGTGCAAAAACAATAAGTGCAACACACATTGTAAATTAGG 500
Query 720 CAAGGCTGAGGTAATTCCAGAGATGA-AATATGGGAGGCCAGTCTACAGCTTTAATGCTA 778
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 501 GAAGGCTGAGGTAATTCCAGAGATGATCA-ATGGGAGGCCAGTCTACAGCTTTAGTGCTA 559
Query 779 AATTTCAACCAACAAGCAAAAGCACAAGTGATGCTTCTTCTTCTTCTACAACTTCAACAT 838
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 560 AATTTCAACCAACAAGCAAAAGCACAAGTGATGCTTCTTCTTCT---ACAACTTCAGCTT 616
Query 839 CTGATACCGCAAATGAAGCACAAGATAGAGAGTCGTCACAAGAAGAGTTTGTTCCTGCTA 898
|||||| ||||||| ||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 617 CTGATAGCGCAAATCAAGAACAAGATAGAGAGTC---ACAAGAAGAGATTGTTCCTGCTA 673
Query 899 ATGCTTCACCTGCTGCTAGAGGAGATGCAAACGAAGCATAG 939
||||||||||||||||||||||| ||||||||||||| |||
Sbjct 674 ATGCTTCACCTGCTGCTAGAGGAAATGCAAACGAAGCGTAG 714
Score = 483 bits (261), Expect = 1e-135
Identities = 303/324 (94%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 34 ATGGATATTGCCGAGAAGAAACTTTCGAAGAATGATTACGATGGAGCTAAAACATTCATC 93
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATATTGCCGAGAAGAAACTTTCGGAGAATGATTACGATGGAGCTAAAAAATTCATT 60
Query 94 AGCAAGGCTCAGGCTTTGTATCCAAAGCTCGATGGTTTGGAACAAGTGGTGATGATGATC 153
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 61 AGCAAGGCTCAGGCTTTGTATCCAAAGCTTGATGGTTTGGAACAAGTGTTGATGATGATT 120
Query 154 GATGTTTATATCTCTGCATCAAACAAAATCAACGGAGAAGCTGATTGGTATGGGATTCTC 213
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 GATGTTTATATCTCTGCAACAAACAAGATCAACGGAGAAGCTGATTGGTATGGAATTCTC 180
Query 214 GGTATAGATCCTTTAGCTGATGAGGAAGCAGTGAAGAAACAATACAAGAAGTTGGCTCTT 273
||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 181 GGTGTAGATCCTTTAGCTGATGATGAAGCTGTGAAGAAACAGTACAAGAAGTTAGCTCTT 240
Query 274 TTGCTTCATCCAGACAAGAACAGGTTTAATGGCGCGGAAGGCGCGTTTAAGCTTGTGCGA 333
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 241 TTGCTCCATCCCGACAAGAACAGGTTTAACGGCGCGGAAGGCGCGTTTAAGCTTGTTCTA 300
Query 334 CACGCTAGGGATTTATTATCTGAC 357
|| ||| |||||||||||||||||
Sbjct 301 CAAGCTTGGGATTTATTATCTGAC 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5