BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19590.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492907 jgi|Araly1|492907|fgenesh2_kg.7__2340__AT4G19590.1 1112 0.0
> Ahg492907 jgi|Araly1|492907|fgenesh2_kg.7__2340__AT4G19590.1
Length=950
Score = 1112 bits (602), Expect = 0.0
Identities = 758/831 (91%), Gaps = 19/831 (2%)
Strand=Plus/Plus
Query 1 ATGGATATTGCTAAGAGGAAAGTTGCAGAGAATGATTACAACGGGGCTAAGCTTTTTGCT 60
||||||||||| |||||||||||||| |||| ||||||||||||||| || |||||||||
Sbjct 1 ATGGATATTGCCAAGAGGAAAGTTGCTGAGACTGATTACAACGGGGCGAAACTTTTTGCT 60
Query 61 AACAAGGCTCAGGATTTGTATCCGAAACTTGATGGTTTAAGACAAGTGATGATGTTGATC 120
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 61 AACAAGGCTCAGGATTTGTATCCGAAGCTTGATGGCTTAAGACAAGTTATGATGTTGATC 120
Query 121 GATGTGTATATCTCAGCAGGAAATACAATTAGT-GGAGGAGAATCTGATTGGTATGGAAT 179
||||| ||||||||||||||||| | ||| | | ||||| ||||||||||||||||||||
Sbjct 121 GATGTTTATATCTCAGCAGGAAACAAAATCA-TCGGAGGGGAATCTGATTGGTATGGAAT 179
Query 180 TCTTGGTGTTGATCCTTTGGCTGATGAGGAAGTAGTGAAGAAACAGTATAAGAGGCTAGC 239
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 TCTTGGTGTTGATCCATTGGCTGATGAGGAAGTAGTCAAGAAACAATATAAGAGGCTAGC 239
Query 240 TCTTTTGCTTCATCCTGACAAGAACAATTGTGAAGGCGCAGAGGGTGCGTTTAAGCTTGT 299
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 240 TCTTTTGCTTCATCCTGACAAGAACAACTGTGAAGGTGCAGAGGGTGCGTTTAAACTTGT 299
Query 300 GTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAGAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAAAG 359
Query 360 GAAGTTGAACGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCTCCAAAGAAACC 419
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAGTTAAATGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCACCAAAGAAACC 419
Query 420 ACCAAATCAGCCGAAACAACAACCAAATCAGCAGAAACAACCACCAGATCAGCAGAAGCA 479
||| || ||||||||||| | ||||||||||||||||||||| ||| |||||||||||||
Sbjct 420 ACCTAACCAGCCGAAACAGCCACCAAATCAGCAGAAACAACCGCCAAATCAGCAGAAGCA 479
Query 480 GCCACCAAATCAGCCTAGACAGCCACCAAACCAGCAGAAGCAACCACAAAACGAGCC-GA 538
|||||||||||||| || ||||||||||||| ||||||||||||||| |||| |||| ||
Sbjct 480 GCCACCAAATCAGCATAAACAGCCACCAAACGAGCAGAAGCAACCACCAAACCAGCCCGA 539
Query 539 AACAACCACCAAACCAGCCTAAACAACCACCAAATCAAGC-AAGTACTAATGGTAGAGCT 597
| || |||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 540 A-CAGCCACCAAACCAGCCCAAACAACCACCAAACCA-GCCAAGTACTAATGGTAGAGCC 597
Query 598 AGAAGCAAAAAGCCCACTTCCAAAGTTTCTATCTTTT-GGACAATGTGCAACAAATGC-G 655
|||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||| |
Sbjct 598 AGAAGCAAAAAGCCCACTGCTAAAGTTCCTA-CTTTTTGGACAATGTGCAACAAATGCTG 656
Query 656 AGACACAATATGAGTATGTGAGGGCAACTGAGATAG-AGAAAACACCAACTGAGAAGGAA 714
||||||||| |||||||| ||||||||||||| || |||||||| |||||||||| ||
Sbjct 657 -GACACAATACGAGTATGTTAGGGCAACTGAGA-AGGAGAAAACAGCAACTGAGAA--AA 712
Query 715 A--AAACACCAACTGAGAAAGAGGAAACACCACAAGCAACAAACAAGAACACAAATGGTG 772
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 AGGAAACACCATCTGAGAAAGAGGAAACATGGCAAGCAACAAACAAGAACACAAATGGTG 772
Query 773 CTTCGTCTTCTTGTGATAGAGATTCTTCACTAAATGTTAATTTTGATTCTA 823
| || | | |||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 773 CATC-T-T-CTTGTGATAGAGATTCTTCACTGACTGTTAATGTTGGTTCTA 820
Score = 209 bits (113), Expect = 3e-53
Identities = 125/131 (95%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 904 AAAAGAGAGGTAAGGGAGTCAGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 963
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 820 AAAAGAGAGGTTAGAGAGTCGGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 879
Query 964 AAAGTAGAAGAGAGAGTTTTTAAGAAGCTGAGGACAGATAACTATGCAGAGTCAAGTAGT 1023
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 880 AAAGTAGAAGAAAGAGTTTTTAAGAAGCTGAGGACAGATAATTATGCAGAGTCAAGTAGT 939
Query 1024 GAAATCAAGGT 1034
| |||||||||
Sbjct 940 GGAATCAAGGT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5