BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19590.1 Length=1038 Score E Sequences producing significant alignments: (Bits) Value Ahg492907 jgi|Araly1|492907|fgenesh2_kg.7__2340__AT4G19590.1 1112 0.0 > Ahg492907 jgi|Araly1|492907|fgenesh2_kg.7__2340__AT4G19590.1 Length=950 Score = 1112 bits (602), Expect = 0.0 Identities = 758/831 (91%), Gaps = 19/831 (2%) Strand=Plus/Plus Query 1 ATGGATATTGCTAAGAGGAAAGTTGCAGAGAATGATTACAACGGGGCTAAGCTTTTTGCT 60 ||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||| Sbjct 1 ATGGATATTGCCAAGAGGAAAGTTGCTGAGACTGATTACAACGGGGCGAAACTTTTTGCT 60 Query 61 AACAAGGCTCAGGATTTGTATCCGAAACTTGATGGTTTAAGACAAGTGATGATGTTGATC 120 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 61 AACAAGGCTCAGGATTTGTATCCGAAGCTTGATGGCTTAAGACAAGTTATGATGTTGATC 120 Query 121 GATGTGTATATCTCAGCAGGAAATACAATTAGT-GGAGGAGAATCTGATTGGTATGGAAT 179 ||||| ||||||||||||||||| | ||| | | ||||| |||||||||||||||||||| Sbjct 121 GATGTTTATATCTCAGCAGGAAACAAAATCA-TCGGAGGGGAATCTGATTGGTATGGAAT 179 Query 180 TCTTGGTGTTGATCCTTTGGCTGATGAGGAAGTAGTGAAGAAACAGTATAAGAGGCTAGC 239 ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct 180 TCTTGGTGTTGATCCATTGGCTGATGAGGAAGTAGTCAAGAAACAATATAAGAGGCTAGC 239 Query 240 TCTTTTGCTTCATCCTGACAAGAACAATTGTGAAGGCGCAGAGGGTGCGTTTAAGCTTGT 299 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 240 TCTTTTGCTTCATCCTGACAAGAACAACTGTGAAGGTGCAGAGGGTGCGTTTAAACTTGT 299 Query 300 GTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAGAG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 TTTAGCTGCTTGGTGTTTGTTATCTGATAAGGTTAAGAGAATTGCTTATGATCAGAAAAG 359 Query 360 GAAGTTGAACGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCTCCAAAGAAACC 419 |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 GAAGTTAAATGAAGTTAAACCGAAAAGGAGTCGAAAGCAGAAACAACCACCAAAGAAACC 419 Query 420 ACCAAATCAGCCGAAACAACAACCAAATCAGCAGAAACAACCACCAGATCAGCAGAAGCA 479 ||| || ||||||||||| | ||||||||||||||||||||| ||| ||||||||||||| Sbjct 420 ACCTAACCAGCCGAAACAGCCACCAAATCAGCAGAAACAACCGCCAAATCAGCAGAAGCA 479 Query 480 GCCACCAAATCAGCCTAGACAGCCACCAAACCAGCAGAAGCAACCACAAAACGAGCC-GA 538 |||||||||||||| || ||||||||||||| ||||||||||||||| |||| |||| || Sbjct 480 GCCACCAAATCAGCATAAACAGCCACCAAACGAGCAGAAGCAACCACCAAACCAGCCCGA 539 Query 539 AACAACCACCAAACCAGCCTAAACAACCACCAAATCAAGC-AAGTACTAATGGTAGAGCT 597 | || |||||||||||||| |||||||||||||| || || |||||||||||||||||| Sbjct 540 A-CAGCCACCAAACCAGCCCAAACAACCACCAAACCA-GCCAAGTACTAATGGTAGAGCC 597 Query 598 AGAAGCAAAAAGCCCACTTCCAAAGTTTCTATCTTTT-GGACAATGTGCAACAAATGC-G 655 |||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||| | Sbjct 598 AGAAGCAAAAAGCCCACTGCTAAAGTTCCTA-CTTTTTGGACAATGTGCAACAAATGCTG 656 Query 656 AGACACAATATGAGTATGTGAGGGCAACTGAGATAG-AGAAAACACCAACTGAGAAGGAA 714 ||||||||| |||||||| ||||||||||||| || |||||||| |||||||||| || Sbjct 657 -GACACAATACGAGTATGTTAGGGCAACTGAGA-AGGAGAAAACAGCAACTGAGAA--AA 712 Query 715 A--AAACACCAACTGAGAAAGAGGAAACACCACAAGCAACAAACAAGAACACAAATGGTG 772 | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 713 AGGAAACACCATCTGAGAAAGAGGAAACATGGCAAGCAACAAACAAGAACACAAATGGTG 772 Query 773 CTTCGTCTTCTTGTGATAGAGATTCTTCACTAAATGTTAATTTTGATTCTA 823 | || | | |||||||||||||||||||||| | ||||||| ||| ||||| Sbjct 773 CATC-T-T-CTTGTGATAGAGATTCTTCACTGACTGTTAATGTTGGTTCTA 820 Score = 209 bits (113), Expect = 3e-53 Identities = 125/131 (95%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 904 AAAAGAGAGGTAAGGGAGTCAGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 963 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 820 AAAAGAGAGGTTAGAGAGTCGGAAGAAGAAGCTGGTAGAGGAATTGCAAACTCTGATTTG 879 Query 964 AAAGTAGAAGAGAGAGTTTTTAAGAAGCTGAGGACAGATAACTATGCAGAGTCAAGTAGT 1023 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 880 AAAGTAGAAGAAAGAGTTTTTAAGAAGCTGAGGACAGATAATTATGCAGAGTCAAGTAGT 939 Query 1024 GAAATCAAGGT 1034 | ||||||||| Sbjct 940 GGAATCAAGGT 950 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38618514921 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5