BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19610.1
Length=2852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890214 jgi|Araly1|890214|Al_scaffold_0007_2200 3675 0.0
Ahg349841 jgi|Araly1|349841|fgenesh1_pg.C_scaffold_6000434 1315 0.0
Ahg893015 jgi|Araly1|893015|Al_scaffold_0006_1011 1074 0.0
> Ahg890214 jgi|Araly1|890214|Al_scaffold_0007_2200
Length=2367
Score = 3675 bits (1990), Expect = 0.0
Identities = 2249/2372 (95%), Gaps = 25/2372 (1%)
Strand=Plus/Plus
Query 353 ATGCGTTCCAATGATGGTAAGAGTAGACAATTTGGTTTTATTGGATTCCGTAGTGCTCAA 412
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 ATGCGTTCCAATGATGGTAAGAGTAGACAATTTGCTTTTATTGGATTTCGTAGTGCTCAA 60
Query 413 GAAGCTCAACAAGCTATTAAGTACTTCAACAA-TACTTATCTTGGTACTTCTCTTATCA- 470
||||||||| |||||||||||||||||||||| | ||||||||| |||||||| ||| |
Sbjct 61 GAAGCTCAAGAAGCTATTAAGTACTTCAACAAGT-CTTATCTTGATACTTCTCGTAT-AT 118
Query 471 TTGTTGAGATTGCTCACAAAGTTGGAGATGAGAATGCTCCTCGTCCGTGGAGTCGTCTTT 530
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 119 TTGTTGAGATTGCTCATAAAGTCGGAGATGAGAATGCTCCTCGTCCCTGGAGTCGTCTTT 178
Query 531 CACATAAGAAAGAAGA-G--G--AA-G----C--TAAAAAATCTTCTAGTGAAGGCTTAA 578
|||| ||||||||||| | | || | | |||||||||||||| ||||| |||||
Sbjct 179 CACACAAGAAAGAAGAGGAAGCTAATGAAAACAGTAAAAAATCTTCTACTGAAGTCTTAA 238
Query 579 A-AGATGGTAATGCTAAAGGAGGTAAAAAGAGGAAAGCAGAGGTTGATGATCCTGAATTT 637
| | ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 239 ACA-ATGGTAATGCTAAAGGAGGTAAAAAGAAGAAAGCAGAGGTTGACGATCCTGAGTTC 297
Query 638 CAAGAATTTCTTGAGGTTCATCAGAGGAGTAAGTCGAAAATCTGGTCTAATGACATGTCG 697
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 298 CAAGAATTTCTTGAGGTTCATGAGAGGAGTAAGTCGAAAATCTGGTCCAATGACATGTCC 357
Query 698 ATTCCTCCTGCTCCTGAAGAAACCGGTAAAGAGAAGGTCTTGGTGAAGAAAGCAGATGAG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ATTCCTCCTGCTCCTGAAGAAACCGGTAAAGAGAAGGTCTTGGTGAAGAAAGCGGATGAG 417
Query 758 CAAATAG-TTTCCAATGGTGTTGAGCCTAAGAAAGCTAAAAAATCATCTGATACTGAAAA 816
| ||| | ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 418 CCAAT-GATTTTCAATGGTGCTGAGCCTAAGAAAGCTAAAAAGTCATCTGATACCGAAAA 476
Query 817 GACTAAAAAGAGCAAAGTTGTTGCTGCCAGTGATGATGTTTCTGATATGGAATACTTCAA 876
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 GACTAAAAAGAGCAAAGTTGTTGCTGCCAGCGATGATGTTTCTGATATGGAATACTTCAA 536
Query 877 GAGTAGGATTAAGAAAAATCTGTCTGATTCGGAGAGTGATAATGAATCTGAGGATAGTAG 936
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 537 GAGTAGGGTTAAGAAAAATCTGTCGGATTCGGACAGTGATAATGAATCTGAGGATAGTAG 596
Query 937 TGAAGATGAAGCTGGTGATGATGATGGTAAAGCTGAGACAGATGGTCAGGATGCTGATAT 996
||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 597 TGAAGATGAAGCTAGTGATGATGATGGTAAAGCTGAGGCAGATGGTCATGATGCTGATAT 656
Query 997 TCGTTATTTTCCTATTGATGGCGATGTTGAAGCTGGCGGAGTTGGTAAAGATGATGATGG 1056
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 657 TCGTAATTTTCCTATTGATGGCAATGTTGAAGCTGGCGGAGTTGATAAAGATGATGATGG 716
Query 1057 CGATGCCATGGAAGTAGAAGGTGATGGCAAGGTGGCTCAAGAATCGAAAGCTGTCAGTGA 1116
|||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 717 CGATACCATGGAAGTAGAAGCCGATGGCAAGGTGGCTCAAGAATTGAAAGCTGACAGTGA 776
Query 1117 TGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 1176
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATGTTCTGGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 836
Query 1177 AGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTCCATCTTGTTCTTGA 1236
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 837 AGAGCTTATGGAACATTTTAGCAAATTTGGTGAGATATCAGAAGTCCATCTTGTTCTTGA 896
Query 1237 CAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGC 1296
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 CAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCCGATTCCGGAATGTGC 956
Query 1297 GGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATATTTT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 GGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATGTTTT 1016
Query 1357 GCCAGCTAAGCACCGTGAAACATCTGATAAACAAGTGAATGACACTTCTAACCTGCCAAA 1416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCCAGCCAAGCACCGTGAAACATCTGATAAACAAGTGAATGACACTTCTAACCTGCCAAA 1076
Query 1417 AACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAGATACAAA 1476
||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 AACTTTCAAGCAAAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAAATACAAA 1136
Query 1477 GGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTCAGGGTGTA 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTCAGGGTGTA 1196
Query 1537 TGGTGTAAGCAAGAGTGAGTTACTTGACCGTGAAGCTGAAGATCCTGCTGTACGCCTTGC 1596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGGTGTAAGCAAGAGTGAGCTACTTGACCGTGAAGCTGAAGATCCTGCTGTACGCCTTGC 1256
Query 1597 TTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCGAAAGCTGGAGTAAA 1656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1257 TTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCTAAAGCTGGAGTAAA 1316
Query 1657 TGTTACTTCTTTGGAAAAATTTGCTACAAGGAATGGTGATGAGAAAAACCGAAGCAAACA 1716
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 TGTTACTTCTTTGGAAGAATTTGCTACAAGGAATGGTGATGAGAATAACCGAAGCAAACA 1376
Query 1717 TATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTT 1436
Query 1777 TGGAAAATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGACGATGGCCTTGGC 1836
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGGAAGATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGACGATGGCCTTGGT 1496
Query 1837 TGTGTTTCTGGAGCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATGGCATACAAGCGTTA 1896
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1497 TGTGTTTCTTGAGCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATGTCATACAAGCGTTA 1556
Query 1897 CAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTTGAGCCAAAAAATCT 1956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1557 CAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTTGAGCCAAAAACTCT 1616
Query 1957 TCCTGACACCAATGAAGAGA-GAAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACT 2015
|||||||| ||||||||||| || |||| ||| ||||| ||||||||||||||||||||
Sbjct 1617 TCCTGACAACAATGAAGAGAAGA-GTGATGTTGCAGAAATTGGCGTGAGAAGAGTCAACT 1675
Query 2016 TGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGTCCTTAATGTTAAGA 2075
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1676 TGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGTTCTTCATGTTAAGA 1735
Query 2076 ATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTCACTAAACTGGTGAAGC 2135
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1736 ATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTGACTAAACTGGTGAAGC 1795
Query 2136 AGGGAAAGATTCTCAGTGTCACGATAATAAAGCATAAAAAGAATGAGAAGTATCTTTCAA 2195
||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |
Sbjct 1796 AGGGAAAGATTCTCAGTGTCAAGATAATAAAGCATGTAAAGAATGGGAAAAATCTTTCGA 1855
Query 2196 GCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATC 2255
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1856 GAGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAATGTCTACAGAGATT 1915
Query 2256 TACAGGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 2315
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TACAGGGAACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 1975
Query 2316 GTGACAAGGTTGGAAAAGATTCAAACAAGGACAAACCTTGTACAAAGTTACATGTGAAAA 2375
||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1976 GTGACAAGGCTGGGAAAGATTCAGGCAAGGACAAACCTTCTACAAAGTTACATGTGAAAA 2035
Query 2376 ATATAGCTTTTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGA 2435
|| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2036 ATGTAGCTTTTGAGGCAACCAAGAAAGAACTAAAACAGCTATTCAGTCCATTTGGACAGA 2095
Query 2436 TCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTATGCTTTTGTTG 2495
|||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||
Sbjct 2096 TCAAGAGTATGAGGCTTCCAAAGAGGAATATCGAGCAATATGCTGGTTTTGCGTTTGTTG 2155
Query 2496 AATTTGTGACAAAGCAAGAAGCCTTAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCT 2555
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AATTCGTGACAAAGCAAGAAGCCTTAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCT 2215
Query 2556 ACGGACGCCATTTGGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGA 2615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2216 ACGGACGCCATTTGGTGCTCGAGTGGGCCAACGATGACAATAGCATGGAAGCGATCAGGA 2275
Query 2616 AGCGTTCTGCTGCTAAGTTTGACGAAGAAAACGATAATGCAAGGAAAAGGAAAAGCTCGA 2675
||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 2276 AGCGTTCCGCTGCTAAGTTGGACGAAGAAAATGATAATGCAAAGAAAAGGAAAAGCTCGA 2335
Query 2676 AAGCTGTTGAAG--G-CAAAAATGAAGTTTGA 2704
||| |||||| | | |||||| |||||||||
Sbjct 2336 AAGTTGTTGATGAAGACAAAAACGAAGTTTGA 2367
> Ahg349841 jgi|Araly1|349841|fgenesh1_pg.C_scaffold_6000434
Length=2079
Score = 1315 bits (712), Expect = 0.0
Identities = 1074/1243 (86%), Gaps = 47/1243 (4%)
Strand=Plus/Plus
Query 1104 AAGCTGTCAGTGATGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACA 1163
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAGCTGACAGAGTTGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACA 664
Query 1164 CTGCAACAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGT-AAGATATCAGAAGTC 1222
||||||||||||||||||||| ||||||||| |||| ||||||| || |||||||| |||
Sbjct 665 CTGCAACAGAAGAAGAGCTTACGGAACATTTCAGCAAATTCGGTGAA-ATATCAGAGGTC 723
Query 1223 CATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCTG 1282
|||||||||||||||||||||||||||| ||||| ||||| |||| | ||||||||| |
Sbjct 724 CATCTTGTTCTTGACAAGGAGACAAAAAATTCCAGAGGAATGGCCTTCGTCCTTTACCAG 783
Query 1283 ATTCCGGAATGTGCGGCAAGGGCAATGGAGGAATTAGATAACTCAAG-TTTTCAGGGCCG 1341
|| ||||||| ||| ||||||||||||||||||||||||| ||| ||| ||||| ||
Sbjct 784 ATACCGGAATATGCAAAAAGGGCAATGGAGGAATTAGATAAC-AAAGATTTCCAGGGGCG 842
Query 1342 GTTGTTGCATATTTTGCCAGCTAAGCA-CCGTG--AAAC-A---TC--TGA-TA-AAC-A 1389
| ||||||||||||| ||||||||| | || || |||| | || ||| | | |
Sbjct 843 GCTGTTGCATATTTTACCAGCTAAGAAGCC-TGATAAACAAGTGTCAGTGACCAGTTCTA 901
Query 1390 AG--T-G-AATGACACTTCTAACCTGCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAA 1445
| | | ||| || ||||||| ||||||||| |||||||||| ||||| ||||||||||
Sbjct 902 TGTTTCGAAATAACTCTTCTAATCTGCCAAAAGCATTCAAGCAAAAGAGGGAGGAACAAA 961
Query 1446 GAAAGGCATCTGAAGCTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCG 1505
||||||| |||||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 962 GAAAGGCGTCTGAAGCCAGTGGAAATACAAAAGCTTGGAATAGTTTTTTCATGCGACCCG 1021
Query 1506 ATACTATTC-TAGAAAACATAGTCAGGGTG-TATGGTGTAAGC-AAGAGTGAGTTACTTG 1562
||||| || | ||||||||||||| |||| |||||||||| | ||||||||||| ||||
Sbjct 1022 ATACT-GTCGTGGAAAACATAGTCA-GGTGTTATGGTGTAA-CAAAGAGTGAGTTTCTTG 1078
Query 1563 ACCGTGAA-GCTGAAGATCCTGCTGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCG 1621
|||||||| || || |||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1079 ACCGTGAATGC-GACGATCCTGCAGTACGACTTGCTTTGGGAGAAACAAAAGTGATTATG 1137
Query 1622 GAGACCAAAGAAGCCCTTGCGAAAGCTGGAGTAAATGTTACTTCTTTGGAAAAATTTGCT 1681
|||||||||||||| ||||| |||||||||||| ||| || ||||||||| ||||| ||
Sbjct 1138 GAGACCAAAGAAGCACTTGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTTCT 1197
Query 1682 ACAAGGAATGGTGATGAGAAAAACCGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCA 1741
|| |||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GCACGGAAAGGTGATGTGAAGAACCGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCA 1257
Query 1742 TTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTTTGGAAAATTTGGAAGTCTAGACAAA 1801
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 TTTGCTTCCAGTGAAAAGGAACTGGCTCAAATGTTTGGAAGATTTGGAAGTCTAGACAAA 1317
Query 1802 ATTATCCTCCCTCCGACGAAGACGATGGCCTTGGCTGTGTTTC-TGGAGCCGGCTGAGGC 1860
||| | ||||||| |||||||||| |||| ||| ||| |||| | | |||||||||||
Sbjct 1318 ATTGTTCTCCCTCGGACGAAGACGTTGGCTTTGTTTGT-TTTCCTTAAACCGGCTGAGGC 1376
Query 1861 ACGCGCAGCTCTTAAGGGAATGGCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGA 1920
||| |||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1377 ACGTGCAGCTATGAAGGGAATGAAATACAAGCGTTACAAAGATGCTCCCCTGTATCTGGA 1436
Query 1921 GTGGGCTCCTGGAA-ATATTCTTGAGCCAAAAA-ATCTTCCTGACACCAATGAAGAGA-G 1977
||||||||||| || ||||||||||||||||| | |||||||| | ||||||| ||| |
Sbjct 1437 GTGGGCTCCTG-AAGATATTCTTGAGCCAAAAGCA-CTTCCTGATAACAATGAAAAGACG 1494
Query 1978 AAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGA 2037
| |||| |||||||||||| ||||||||| |||||||||| |||||||||| ||||||
Sbjct 1495 A-GTGATGTTGAAGAAAATGATGTGAGAAGACTCAACTTGGATCAGCAGGTTGGAATCGA 1553
Query 2038 TCCAGATGTAACTGAGTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGA 2097
| ||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 1554 TTTGGATATAACTGAGTCAAATGTCCTTTATGTTAAGAATCTGAACTTCAACACAACTGA 1613
Query 2098 TGAGGGTTTGAAGAAGCATTTCACTAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCAC 2157
|||| |||||| ||||||||| ||| ||||||||||||||||||||||||| ||||| |
Sbjct 1614 TGAGAGTTTGAGGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAA 1673
Query 2158 GATAATAAAGCATAAAAAG-AATGAGAAGTA-TCTTTCAAGCGGTTATGGTTTTGTAGAA 2215
||||| ||| | ||| | || ||| || || |||||||||||||||||||||||||
Sbjct 1674 GATAA-AAA--A-AAATGGGAA-GAGTCGTCCTCGTTCAAGCGGTTATGGTTTTGTAGAA 1728
Query 2216 TTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGGGGAC---TGTTCTG 2272
|| ||||| ||||||||||| |||||||||||||||||||||||||| || | |||||
Sbjct 1729 TTTGACTCCGTAGAGACAGCGACCAGTGTCTACAGAGATCTACAGGGAACAACTTTTCTG 1788
Query 2273 GATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 2315
||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1789 GATCGGCATAAATTGATCTTGAGATTCTCTGAAAACAAGCGGA 1831
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 846 GTGATGATGTTTCTGATATGGAATACTTCAAGAGTAGGAT 885
||||||||||||||||||||||||||||||||||| ||||
Sbjct 482 GTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGAT 521
> Ahg893015 jgi|Araly1|893015|Al_scaffold_0006_1011
Length=2238
Score = 1074 bits (581), Expect = 0.0
Identities = 842/963 (87%), Gaps = 38/963 (4%)
Strand=Plus/Plus
Query 1401 CTTCTAACCTGCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAG 1460
||||||| ||||||||| |||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 1022 CTTCTAATCTGCCAAAATCATTCAAGCAAAAGAGGGAGGAACAAAGGAAGGCGTCTGAAG 1081
Query 1461 CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAA 1520
|| ||||| | |||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 1082 CTTGTGGAAACACAAAGGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAAA 1141
Query 1521 ACATAGTCAGGGT-GTATGGTGTAAGC-AAGAGTGAGTTACTTGACCGTGAA-GCTGAAG 1577
|| |||||| ||| ||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct 1142 ACTTAGTCA-GGTCGTATGGTGTAA-CAAAGAGTGAGTTACTTGACCGTGAATGC-GAAG 1198
Query 1578 ATCCTGCTGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCC 1637
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1199 ATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAGAAGCCC 1258
Query 1638 TTGCGAAAGCTGGAGTAAATGTTACTTCTTTGGAAAAATTTGCTACAAGGAATGGTGATG 1697
|||| |||||||||||| ||| | ||||||||| |||||||| || |||| |||||||
Sbjct 1259 TTGCTAAAGCTGGAGTACGTGTCGCCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGATG 1318
Query 1698 AGAAAAACCGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAA 1757
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGAAGAACAGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAA 1378
Query 1758 AGGAACTGGCTCAAATGTTTGGAAAATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGA 1817
||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1379 AGGAACTGGCTCAAATGTTCCGAAAATTTGGAAGTCTTGACAAAATTATTCTCCCTCCGA 1438
Query 1818 CGAAGACGATGGCCTTGGCTGTGTTTC-TGGAGCCGGCTGAGGCACGCGCAGCTCTT-AA 1875
||||||||||||| |||| ||| |||| | || |||||||||||||| |||||| || ||
Sbjct 1439 CGAAGACGATGGCTTTGGTTGT-TTTCCTTGAACCGGCTGAGGCACGTGCAGCT-TTGAA 1496
Query 1876 GGGAATGGCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAA 1935
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
Sbjct 1497 CGGAATGGCATACAAGCGTTACAAAGATGTTCCCCTGTATCTGGAGTGGGCTCCTCGAGA 1556
Query 1936 TATTCTTGAGCCAAAAA-ATCTT-CCTGACACCAATGAAGAGA-GAAGTGACA-TTGAAG 1991
||||||||| |||||| | ||| || || | ||| ||||||| || ||| | ||||||
Sbjct 1557 TATTCTTGAACCAAAAGCA-CTTGCC-GATAACAAAGAAGAGAAGA-GTG-CTGTTGAAG 1612
Query 1992 AAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTG 2051
|||||| | ||||||||||||| |||| |||||||||| |||| || | ||| || | |
Sbjct 1613 AAAATGATGCGAGAAGAGTCAACCTGGATCAGCAGGTTGGAATCTATTCGGATATAGCCG 1672
Query 2052 AGTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 2111
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 1732
Query 2112 AGCATTTCACTAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCACGATAATAA-AGCAT 2170
||||||| ||| |||||||||||||||||||||||| ||||| | |||||||| || ||
Sbjct 1733 AGCATTTGACTGGACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGATAATAAGAG-AT 1791
Query 2171 AAAAAGAATGAGAAGTATCTTTCAAGCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAG 2230
||| |||| || | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1792 TG---GAA-GAGACGT--CGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAG 1845
Query 2231 ACAGCCACCAGTGTCTACAGAGATCTAC-AG--G-GG-AC-TGTTCTGGATGGGCATGCT 2284
||||| |||||||||||||||||||||| || | || | |||||||||||||||| ||
Sbjct 1846 ACAGCGACCAGTGTCTACAGAGATCTACCAGTAGAGGGAAATGTTCTGGATGGGCATTCT 1905
Query 2285 TTGATCTTGAG--ATTCTGTGAAAACAAGCGGAGTGACAA-GGTTGGAAAAGATTCAAAC 2341
||||||||||| |||||| |||||||||||||||| || |||||| ||| |||| ||
Sbjct 1906 TTGATCTTGAGTTATTCTG--AAAACAAGCGGAGTGA-AACGGTTGGGGAAGGTTCAGAC 1962
Query 2342 AAG 2344
|||
Sbjct 1963 AAG 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107643032370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5