BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19633.1

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946217 jgi|Araly1|946217|scaffold_702446.1                        176    1e-43


> Ahg946217 jgi|Araly1|946217|scaffold_702446.1
Length=421

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 295/386 (76%), Gaps = 36/386 (9%)
 Strand=Plus/Plus

Query  1    ATGGCTCAAAATTTTCCAAATGG-ATTGGGTTCATTCTACATCG-GAATGTATA-AA-CT  56
            |||||||  ||||| ||||| || ||| | | | |||  ||| | ||| ||||| ||  |
Sbjct  21   ATGGCTCTCAATTTCCCAAAGGGAATT-GCTGCGTTC--CAT-GTGAAGGTATACAAGGT  76

Query  57   AGTGGAAGATCCTTC-ATCGGATCCAGTAATCCCGT-GAGCAAAAG-CAACAATGGTTTC  113
             |||||||||||||| | | ||| || ||||| | | | || |||| ||||||  |||||
Sbjct  77   TGTGGAAGATCCTTCGA-CAGATGCAATAATCTCATGGGGC-AAAGACAACAACAGTTTC  134

Query  114  GTCATGTGTAATGAGGAAGAGCGAATCCGCAGT---ATACTTAATAGATTCCATTGC-GG  169
            ||||| || |||  |||||||| |||| |||||   ||||||   |||||||| |||  |
Sbjct  135  GTCATTTGGAATCTGGAAGAGCTAATCAGCAGTAAGATACTTTGGAGATTCCACTGCATG  194

Query  170  AAAACGCTCAGAGTTTCTCCCCGAGCTCAAGTATTATGGCTTTAC-AAGAGTTAAGAAGA  228
             |||  | | ||||||| | ||||||| | ||||||||||||| | |||| ||||| | |
Sbjct  195  -AAATTCCCCGAGTTTCACTCCGAGCTTAGGTATTATGGCTTT-CAAAGAATTAAG-A-A  250

Query  229  AGGAGTTTGGGAAAT-GGAACTTAG-AAA-GAAGATTTTGTGAGAGGCCAACCTGAGCGT  285
             || || |||| ||| |||| || | ||| || |||||||||||||||||||||||||||
Sbjct  251  TGG-GTCTGGGGAATGGGAA-TTTGCAAACGATGATTTTGTGAGAGGCCAACCTGAGCGT  308

Query  286  TT-AATGGGCATGATGCTCAAAGCT-TGTAGGAACCACAGGGCCAAATTCAAAGCTAAAG  343
            || || |  |||| || | | |||| || || ||  ||||||||||||| || |||| ||
Sbjct  309  TTGAA-GAACATGGTGATGAGAGCTATG-AGTAAGAACAGGGCCAAATTTAATGCTAGAG  366

Query  344  AAGCAG-CAAAGGAAT-TGCAA-GTT  366
            |||||| ||| ||| | ||||| |||
Sbjct  367  AAGCAGTCAA-GGA-TCTGCAAAGTT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14193879108


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5