BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19640.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1 1245 0.0
Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1 734 0.0
Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007 693 0.0
Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277 689 0.0
Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551 676 0.0
Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928 291 9e-78
> Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1
Length=955
Score = 1245 bits (674), Expect = 0.0
Identities = 862/944 (91%), Gaps = 47/944 (5%)
Strand=Plus/Plus
Query 83 TGTCTCCGTCGTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCGTATCGACC 142
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 43 TGTCTCCGTCTTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCG----G-CA 97
Query 143 TGCGATTCTCTTCAGATCGATAATCCATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 202
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 98 TCCGATTCTCTTCAGATCCATAAT-CATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 156
Query 203 AATTGGTGTTGCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCA 262
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 157 AATTGGTGTTACTTGGAGATGTTGGAGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCA 216
Query 263 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGT 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 217 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACAT 276
Query 323 TAGCTGTGAACGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 382
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 277 TAGCTGTCAACGATGCTACTGTCAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 336
Query 383 ACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATG 442
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 337 ACCATAGTTTGGCTCCAATGTACTACAGGGGTGCTGCTGCTGCAATCATTGTCTTTGATG 396
Query 443 TTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 456
Query 503 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 516
Query 563 AGGTGACAGCAGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAA 622
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 517 AGGTGACTGCAGAGGAGGCACAAACATATGCTCAAGAAAACGGTCTTTTCTTCATGGAAA 576
Query 623 CTTCAGCAAAAACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 682
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CATCAGCAAAAACCGCCACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 636
Query 683 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGATA 742
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 637 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTCCCAGACAGGGCCATGGATA 696
Query 743 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATATTGTGTAATGGCACACACTTCTCTTA 802
||||||||||||||||||||||||||||||||||| | | || | |
Sbjct 697 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATAT----------C------T-CT-T-A 737
Query 803 AAAAGAGATCTTTTGGTCA----CTTTA-AAGTTATGGACTTCTGTGTTTGCGTCTCTTT 857
|||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 738 AAAAGAAATCTTTTGGTCAGTGACTTTTGAAGTTATGGACTTCTGTGTTTGCGTTTCTTT 797
Query 858 GCTTTGTTTTACGTATTTGAGATTTGATCTCCACTATTTTGTAAATAAATCTAATACTCA 917
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 798 GCTTTGTTTTGCGTATTTGAGATTTGATCTCCACTCTTTTGTAAATAAATCTAATACTCA 857
Query 918 A-C-T-AAGTAA-CTAAGTG-CGTGAGGGGGCTATGGATCCATTTGTCATAACGCAAATA 972
| | || || | |||| | | | ||||||||||| ||||| |||| ||||||
Sbjct 858 TGCGTGAA--AAGC-AAGTTTC-T-ATAAATCTATGGATCCAGTTGTCTTAACACAAATA 912
Query 973 TTTTCAAGTTATAGAA--A----CTCTAAAATAAACTCAAACAT 1010
||| |||||||||||| | |||||||||||||||||||||
Sbjct 913 TTT-CAAGTTATAGAATTAGAAACTCTAAAATAAACTCAAACAT 955
Score = 78.7 bits (42), Expect = 8e-14
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 17 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 58
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 42
> Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1
Length=1068
Score = 734 bits (397), Expect = 0.0
Identities = 549/623 (88%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 154 TCAGATCGATAATCCATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTT 212
||| ||| || || ||||||| || |||||||||||| ||| |||||||||||||||||
Sbjct 176 TCA-ATCAATCAT-CATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTGTT 232
Query 213 GCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTT 272
|| ||||||||||| ||||||||||||||||||||| | || ||||| |||||||||||
Sbjct 233 ACTAGGAGATGTTGGGGCTGGAAAATCAAGTCTTGTGCTGCGTTTTGTTAAAGATCAGTT 292
Query 273 TGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAA 332
|||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||
Sbjct 293 TGTTGAATTCCAGGAATCAACCATAGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAA 352
Query 333 CGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTT 392
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 353 TGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGGTACCATAGCTT 412
Query 393 GGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCA 452
|||||||||||||||||| ||||| |||||||| || ||||| ||||| |||| |||||
Sbjct 413 GGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACAAATCA 472
Query 453 GGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAA 512
|| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 AGCGTCATTTGAGAGGGCGAAGAAATGGGTTCAAGAACTGCAGGCACAAGGTAACCCTAA 532
Query 513 TATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGC 572
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 533 TATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAGGTGTCTGC 592
Query 573 AGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAACTTCAGCAAA 632
|||||| ||| | | ||||||||| || ||| | ||||||||||||||||| ||||| ||
Sbjct 593 AGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTCATGGAAACCTCAGCGAA 652
Query 633 AACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGC-AAGAAGGCTACCGCGAGTAC 691
||||| || ||||||||||| |||||||| |||||||| || |||||||||||| ||||
Sbjct 653 GACCGCAACAAATGTCAAAGACATATTCTACGAAATCGCGAA-AAGGCTACCGCGTGTAC 711
Query 692 AGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGA-TAGGGCAGTG 750
||||| | ||||||||||||||||||||||| ||| || |||||| || || ||||||
Sbjct 712 AGCCAGCTGAAAACCCAACAGGAATGGTTCTCCCAAAC-GGGCCAGGGGCTACAGCAGTG 770
Query 751 AGCTCATCTTGTTGTGCTTAGTT 773
|| ||||| ||||||||||||||
Sbjct 771 AGTTCATCGTGTTGTGCTTAGTT 793
> Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007
Length=435
Score = 693 bits (375), Expect = 0.0
Identities = 389/396 (98%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60
Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG 180
Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240
Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300
Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 360
Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 564
||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
> Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277
Length=441
Score = 689 bits (373), Expect = 0.0
Identities = 395/406 (97%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAATTTGGTGTTACTTGGAGATGTTGGA 60
Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG 180
Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240
Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 AGAGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300
Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGATAACCCTAATATGGTCATGGCCCTT 360
Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGCAG 574
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAG 406
> Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551
Length=435
Score = 676 bits (366), Expect = 0.0
Identities = 386/396 (97%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60
Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||
Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTGTCAAG 180
Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240
Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 AGAGGTGTTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300
Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 360
Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 564
||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
> Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928
Length=312
Score = 291 bits (157), Expect = 9e-78
Identities = 169/175 (97%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60
Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTG 343
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTG 175
Score = 224 bits (121), Expect = 9e-58
Identities = 127/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 376 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTT 435
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 175 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGTTGCTGCTGCAATCATTGTC 234
Query 436 TTTGATGTTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTTGATGTTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 294
Query 496 GCACAAGGTA 505
||||||||||
Sbjct 295 GCACAAGGTA 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5