BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19645.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492902 jgi|Araly1|492902|fgenesh2_kg.7__2335__AT4G19645.1 1583 0.0
> Ahg492902 jgi|Araly1|492902|fgenesh2_kg.7__2335__AT4G19645.1
Length=1065
Score = 1583 bits (857), Expect = 0.0
Identities = 1005/1073 (94%), Gaps = 24/1073 (2%)
Strand=Plus/Plus
Query 1 AAAAACAGAGTCTTTTAGTATCTTCTTCTTGGGTATAACGAAGA-TTTTTGTGGTTTCTT 59
||||||||||||||||||| |||||||||||||||||||||||| ||||| | || | ||
Sbjct 1 AAAAACAGAGTCTTTTAGTTTCTTCTTCTTGGGTATAACGAAGATTTTTTAT-GTAT-TT 58
Query 60 CTG-ATTAATGATGATGATAAAGCTTGAGAGAAGTGATTAGTCTGTAGAAGAAG-AAGAG 117
| | | | |||||||||| |||||||||||||| |||||| ||| |||| || ||| |
Sbjct 59 CAGTAATGGTGATGATGATGAAGCTTGAGAGAAGGGATTAG--TGT-GAAG-AGTAAGTG 114
Query 118 TTAAAACCATTCACCAAAGAAGAAATTGAG-A--A-CTAGAGACAGTCATGGAGATCAAA 173
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 115 TTAAAACCATTCACCAAAGAAGAAATTGAGAACTAGCTAGAGACAGTCATGGAGATCAAA 174
Query 174 TCTTACCAAAATCAAGCAGAGTATTTTGTTGAACACTATTTATTAGCAGATCCATTTCTT 233
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 175 TCTTACCAAACTCAAGCAGAGGATTTTGTTGAACACTATTTACTAGCAGATCCATTTCTT 234
Query 234 CCATATACTTCTGTTCTTGTTGGAATCTGTCTTTGCAAATTGGTATATGATCTTACGGAG 293
||||||||||||||| ||| |||||||| ||| ||||||||||| |||||||||||||||
Sbjct 235 CCATATACTTCTGTTGTTGCTGGAATCTTTCTCTGCAAATTGGTCTATGATCTTACGGAG 294
Query 294 TTATTCAGCTCAATTCATGTCAAATCATACTCAGCTCTCACAAAAATAAAGAGAATTGAA 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTATTCAGCTCAATTCATATCAAATCATACTCAGCTCTCACAAAAATAAAGAGAATTGAA 354
Query 354 TGGAACAACAGGGGAATTTCTACAGTCCATGCGATCTTTATCTCATTCATGGCATTATAC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGGAACAACAGGGGAATTTCTACAGTCCATGCGATCTTTATCTCATTCATGGCATTATAC 414
Query 414 TTTGCGTTCTTCTCTGATTTGTTTTCTGACCAAAGAAGCCTTGAAACCCTTACGGTGTTT 473
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 415 TTTGTGTTCTTCTCTGATTTGTTTTCTGACCAAAGAAGCCTTGAAAGCCTTACGGTGTTT 474
Query 474 CGTAACTCGCCTCTGTCTACCTTTGGTTTAGGAGTATCAGTTGGTTACTTTCTTGCGGAT 533
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGTAGCTCGCCTCTCTCTAACTTTGGTTTAGGAGTATCAGTTGGTTACTTTCTTGCGGAT 534
Query 534 CTTGGAATGATCTTTTGGTTATACCCTTCTTTAGGAGGATCAGAATATATATTACATCAC 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 CTTGGAATGATCTTTTGGCTATACCCTTCTTTAGGAGGATCAGAATATATATTCCATCAC 594
Query 594 TGCTTATCTGGAACAGCAGTAGCGTATTCTTTGTTCTCTGGAGAGGCTCAGCTTTACACA 653
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 595 TGCTTATCCGGAACAGCAGTAGCGTATTCTCTATTCTCTGGAGAGGCTCAGCTTTACACA 654
Query 654 TACATGGTTTTAATCTCTGAAGTGACTACACCAGAGATCAATCTTAGATGGTACCTTGAC 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TACATGGTTTTAATCTCTGAAGTGACTACACCAGAGATCAATCTTAGATGGTACCTTGAC 714
Query 714 ATTGCTGGTTTGAAA-CGATCTAAAGCTTATCTTGTTAATGGAGTTGCTATATTCTTTGC 772
||||||||||| ||| |||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 715 ATTGCTGGTTT-AAAGCGATCTAAAGCTTATCTTATTAATGGAATTGCTATTTTCTTTGC 773
Query 773 TTGGTTGACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTACACACATTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 774 TTGGTTGACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTATATACATTA 833
Query 833 TGATCAGGTGATAGAGATGCATACATTCGGTTATCTACTGGTATTT-GTTGTACCGATTT 891
|||||||||| || ||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 834 TGATCAGGTGGTACAGATGCATACATTCGGTTATCTATTGGT-TTTCGTTGTACCGATTG 892
Query 892 CATTGAGTGTCATGAACTTGATCTGGTTTGGTAAGATAGTGAAGGGATTGAAGAAAACTC 951
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 893 CATTGAGTGTCATGAACTTGATGTGGTTTGGTAAGATAGTGAAGGGATTGAAGAAAACTC 952
Query 952 TTGAGAAAAGACAGTGAAGAAAGAGTTGTGttttttttttt------A-TGTAAATATAA 1004
||||||||| ||||||||||||||||| | ||||||||||| | |||||||||||
Sbjct 953 TTGAGAAAACACAGTGAAGAAAGAGTTCTCTTTTTTTTTTTTTTTCTAATGTAAATATAA 1012
Query 1005 AACTCTTATGAAGAATCTTACAAGTTTATAAGCAACAAAGATATGGTTTGTTT 1057
|||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1013 AACTCTTATGAAGAATCTTACAAGTTCATAAGCAACAAAGATATGGTTTTTTT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5