BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19650.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946213 jgi|Araly1|946213|scaffold_702442.1 2651 0.0
Ahg948532 jgi|Araly1|948532|scaffold_800419.1 734 0.0
> Ahg946213 jgi|Araly1|946213|scaffold_702442.1
Length=1695
Score = 2651 bits (1435), Expect = 0.0
Identities = 1589/1665 (95%), Gaps = 4/1665 (0%)
Strand=Plus/Plus
Query 88 GTTGCGATGTTATTATCCAGA-AATCAGAGAAGAGTTCATAAACTGTTGAATATGATTTC 146
|||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||
Sbjct 33 GTTGCGATGTTATTGTGCAGAGAA-CAGAGAAGAGTTCATAAACTGTTGAATATGATTTC 91
Query 147 AAATCTCAACTACTGTATAACTTTCTCATCTATTCCTCGTCAAAACCCAGTTCAAAGATT 206
|||||||||| | |||||| |||||||| | |||||||||||||||| ||||||||||||
Sbjct 92 AAATCTCAACAATTGTATAGCTTTCTCACCAATTCCTCGTCAAAACCAAGTTCAAAGATT 151
Query 207 GAAAGCTGTGTTCGTCAGGATAAATCTAAGTTACAACAACACTCGTCTCACTTACCAACT 266
||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 152 GAAAGCTGTCTTCGTAAGGATAAATCTGAGTTACGACAACACTCGTCTCACTTACCAACT 211
Query 267 AGAGCATATAAGTAAGAATTCTCCTTGTTTTATGTCGACTTTGTTGTCTAAGATTGATGA 326
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 212 AGAGCATATAAGTAAGAATTCTCCTTGTTTTATGTCGGCTTTGTTGTCCAAGATTGATGA 271
Query 327 TAATCAGAAAGATGTATCCAAGGGATTGACTAAGTTCCTTAGGTACAATCCGATAAACGA 386
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 272 TAATCACAAGGATGTATCCAGGGGATTGACTAAGTTCCTTAGGTACAATCCGATAAACGA 331
Query 387 GTTTGAACCGTTTTTCGAGAGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTTCTTCC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTTTGAACCGTTTTTCGAGAGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTTCTTCC 391
Query 447 ACGGAAGCTAATGTTTTTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGCTCTTTG 506
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 392 GCAGAAGCTAATGTTTTTGAGTGATGATGGTATAATGTTTGAGAACTTTCATGCTCTTTG 451
Query 507 CAACTATGGGATCCCGCGTGGTAAGATTGGCCGTATGTATAAAGAAGCGAGAGAGATTTT 566
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 452 CAACTATGGGATCCCGCGTGGCAAGATTGGCCATATGTATAAAGAAGCGAGAGAGATTTT 511
Query 567 TAGATATGAATCTGGGATGTTGGCGATGAAGCTAAGGGGTTATGAGAATTTGGGTCTTAG 626
|||||||||||||||| ||||||||||||| || |||| |||||||||||||||||| ||
Sbjct 512 TAGATATGAATCTGGGTTGTTGGCGATGAAACTCAGGGATTATGAGAATTTGGGTCTAAG 571
Query 627 TAAGGCTACAGTTATTAAGTTAGTTACTAGTTGCCCTTTGCTACTGGTTGGTGGGATTGA 686
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 572 CAAGGCTACAGTTATCAAGTTAGTTACTAGTTGCCCTTTGCTGCTGGTTGGTGGGATTGA 631
Query 687 TGCTGAGTTTTCTTCTGTAGTTGATAAGTTGAAAGGGTTACAAGTAGGATGTGATTGGCT 746
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 632 TGCTGAATTTTCTTCTGTGGTTGATAAGTTGAAGGGGTTACAAGTAGGATGTGATTGGCT 691
Query 747 TGGGCGGTACTTGTCTGACCGGAAAACATATAGCTGGCGCAGAATTCTGGAGACAATAGA 806
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CGGGCGGTACTTGTCTGAACGGAAAACATATAGCTGGCGCAGAATTCTGGAGACAATAGA 751
Query 807 GTTTCTTGATAAAGTGGGATGTAAAGAGGAGAAGTTGAGTAGTCTTTTGAAAACGTATCC 866
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 752 GTTTCTTGATAAAGTGGGATGTAAAGATGAGAACTTGAGTAGTCTTTTGAAAACGTATCC 811
Query 867 AGCTTTGGTAATCGAAGGCTCCGGAAAGAAATTCTATGTTCTGTTTGGTAGGTTGTTTAA 926
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 812 AGCTTTAGTAATCGAAGGCTCCGGTAAGAAATTCTATGTTCTGTTTGGTAGGTTGTTTAA 871
Query 927 AGCGGGGCTTCAAGTGAATGAGATTTATAGGCTATTTATAGACAATCCAGAGATGTTGTC 986
|| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 872 AGTGGGGTTTCAAGTGAATGAGATTTATAGGCTATTTATAGACTACCCAGAGATGTTGTC 931
Query 987 AGACAAATGCGTGAAAAATATTCAGAAGACGTTGGATTTCTTGATTGCTATTAGAATGGA 1046
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 932 AGACAAATGCGTAAAAAATATCCAAAAGACGTTGGATTTCTTGATTGCTATTAGAATGGA 991
Query 1047 AACGCAGTTTATCACGAAGATTTTGCTGAGTCATATGGAGCTTATTGGTTCATGCTCTCT 1106
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 992 AACGCAATTTATCACGAAGATATTGCTGAGTCATATGGAGCTAATTGGTTCATGCTCTCT 1051
Query 1107 GCCAGCACCTAGAACTGCTTGTCTTAGTTTGAATGTTAAACAAGACGAGCTATGTAAGAT 1166
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| || |
Sbjct 1052 GCCAGCACCTAGAACTGCTTGTCTTAGCTTGAACGTTAGACAAGACGAGCTATGTCAGCT 1111
Query 1167 CTTAAAGAAAGAGCCTTTGAGATTGTTTTGTTTTGTTTCTACAACGAAGAAGAGAAAAAG 1226
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1112 CTTAAAGAAAGAGCCTTTGAGATTGTTTAGTTTTGTTTCTACAACAAAGAAGAGAAAAAG 1171
Query 1227 CAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACAGAGTTTTTGTTGAGGCT 1286
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1172 CAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACTGCGTTTCTGTTGAGGCT 1231
Query 1287 AGGGTATGTAGAAAACTCGGATGAGATGGTGAAGGCTCTAAAACAGTTTCGAGGGAGGGG 1346
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1232 AGGGTATGTAGAAAACTCGGATGAGATGGTGAAGGCTCTGAAACAGTTTCGAGGCAGGGG 1291
Query 1347 AGATCAGCTACAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAACTATAATGTGGT 1406
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1292 AGATCAGCTGCAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAACCATAATGTGGT 1351
Query 1407 TACTGAGATCATCAGGCATGCTCCGATGATACTTAACCTGTCTAAAGATGTCATAGAGAA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TACTGAGATCATCAGGCATGCTCCGATGATACTTAACCTGTCTAAAGATGTCATAGAGAA 1411
Query 1467 AAAGATACATTCCTTAACCGAACTTCTTGGCTATCCAATTGAATCATTGGTAAGGTTCCC 1526
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 1412 AAAGATACATTCCTTAACCGAACTTCTTGGCTATCCGATTGAATCCCTGGTAAGATTCCC 1471
Query 1527 GGCATATCTGTGTTATGATATGCAGAGGATACATCACAGATTCTCAATGTATTTATGGTT 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GGCATATCTGTGTTATGATATGCAGAGGATACATCACAGATTCTCAATGTATTTATGGTT 1531
Query 1587 GAGGGAAAGAGATGCAGCAAAGCCAATGCTGTCACCAAGCACTATTCTCACTTGCGGTGA 1646
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GAGGGGAAGAGATGCAGCAAAGCCAATGCTGTCACCAAGCACTATTCTCACTTGCGGTGA 1591
Query 1647 TGCCCGGTTTGTGAAGTATTTTGTCAATGTCCACCCTGAAGGTCCAGCCATTTGGGAAAG 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 TGCCCGGTTTGTGAAGTATTTTGTCAATGTCCACCCTGAAGGTCCAGCCATTTGGGAAAG 1651
Query 1707 TATAAACCAATCATCTACCTGAAGTT-AAGGTTATTGGCACTATT 1750
|||||||||||||||||||| || || ||| || ||||| |||||
Sbjct 1652 TATAAACCAATCATCTACCTAAA-TTGAAGTTTTTTGGCTCTATT 1695
> Ahg948532 jgi|Araly1|948532|scaffold_800419.1
Length=1432
Score = 734 bits (397), Expect = 0.0
Identities = 1062/1371 (77%), Gaps = 93/1371 (7%)
Strand=Plus/Plus
Query 406 AGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTT-CTTCCACGGAAGC-TAATGT-TT 462
|||||||||||| |||| | |||| || ||||| |||| |||| | | | | | ||
Sbjct 93 AGTTTGGGTTTGCGTCCATCTGAGATT-CCGCGTTTCCTTCAACGGGA-CTTGGT-TCTT 149
Query 463 TTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGCTCTTTGCAACTATGGGATCCCG 522
||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||
Sbjct 150 TTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCG 209
Query 523 CGTGGTAAGATTGGCCGTATGTATAAAGAAGCGAGAGAGATTTTTAGATATGA-ATCTGG 581
||||| ||||||||||| |||| ||||||||| |||||||||||| |||| || | |||
Sbjct 210 CGTGGCAAGATTGGCCGCATGTTTAAAGAAGCAAGAGAGATTTTTGGATACGAGAA-TGG 268
Query 582 GATGTTGGCGAT-GAAGCT--AAGGGGTTATGAGAATTTGGGTCTTAGTAAGGCTACAGT 638
| | |||||| | ||| || ||| |||||||| |||| |||||||||| ||| |||
Sbjct 269 GGTTTTGGCG-TCGAAACTTGAAGC--TTATGAGAGCTTGGTTCTTAGTAAGCCTATAGT 325
Query 639 TATTAAG-TTAGTTACTAGTTGCCCTTTGCTACTGGTTGGTGGGATTGAT-GCTGAGTTT 696
|||||| || |||||| ||||||| ||||| ||||||||||| |||||| | |||||||
Sbjct 326 CATTAAGCTT-GTTACTTGTTGCCCATTGCTTCTGGTTGGTGGCATTGATAG-TGAGTTT 383
Query 697 -TCTTCTGTAGTTGATAAGTTGAAAGG-GTTA-CAAGTAGGATGTGATTGGCTTGGGCGG 753
| |||||| || |||||||||| || || | || |||||||||||||||||| ||||
Sbjct 384 GT-TTCTGTGGTCAATAAGTTGAAGGGAGTAAACA--TAGGATGTGATTGGCTTGCGCGG 440
Query 754 TACTTGTCTGACCGGAAAACATATAGCTGGCG-CAGAATTCTGGAGACAATAGAGTTTCT 812
|| ||||| || | |||||||||| ||||| | || |||| |||||||| ||| | ||
Sbjct 441 TATTTGTCGGATAGAAAAACATATAACTGGCTTCGGA-TTCTTGAGACAATGGAGCTCCT 499
Query 813 TGATAAAGTGGGATGTAAAGAGGAGAAGTTGAGTAGTCTTTTGAAAACGTATCCAGCTTT 872
|||||| ||||| | ||| || |||| ||||||||||||||||||| | ||||||| |||
Sbjct 500 TGATAAGGTGGGGTTTAAGGATGAGAGGTTGAGTAGTCTTTTGAAAGCATATCCAGATTT 559
Query 873 GGTAA-TCGAAGGCTCC-GGAAAGAAATTCT-ATGTTCTGTTTGGTAGGTTGTT-TAAAG 928
||| | || |||| | ||||| ||| || || || |||||| | ||| | |||||
Sbjct 560 GGTGGGT-GA-GGCTTCTGGAAATAAAG-CTTATATTATGTTTGAAAAGTT-TCATAAAG 615
Query 929 CGGGGCTTCA-AGTGAATGAGATTTATAGGCT-ATTTATAGACAATCCAGAGATGTTGTC 986
|| ||||| | ||||||| || || | | | | | |||||| ||||||||| | |
Sbjct 616 TTGGACTTCAGA-TGAATGAAATCGAT-GATTTAGTGACAGACAACCCAGAGATGCTATT 673
Query 987 AGACAAATGC-GTGAAAA-A-TATTCAGAAGACGTTGGATTTCTTGATT-GCTATTAGAA 1042
||| |||| | || |||| | | || ||| ||||||| | ||||||| | ||| ||||
Sbjct 674 AGAGAAAT-CTGTAAAAAGAATTTT-AGA-GACGTTGAAATTCTTGAAACG-TATCAGAA 729
Query 1043 TGGAAACGCAGTTTATCACGAAGATTTTG-CTGAGTCATATGGAGCTTAT-TGGTTCATG 1100
|||||| ||||||| || ||| |||| ||| |||| ||| | ||||| || |||||
Sbjct 730 TGGAAAAGCAGTTTGTCGT-AAGGTTTTTACTGTGTCACATGAAACTTATCTG-TTCATC 787
Query 1101 CTCTCTGCCAGCACCTAGAACTGCTTGTCTTAGTTTGAATGTTA-AACAAGACGAGCTAT 1159
|||||||| || ||||||| ||| ||| ||| ||||| | || | ||| || |||
Sbjct 788 CTCTCTGCTAGGACCTAGAGCTGTTTGGAATAGATTGAAAATCGGAAGA-GACCAGTTAT 846
Query 1160 GTAAGATC-TTAAAGAAAGAGCCTTTGAGATTGTTTTGTTTTGTTTCTACAACGAAGAAG 1218
|| ||||| |||| ||| ||||||||||||||||| |||| | ||||| ||| || ||
Sbjct 847 GTCAGATCATTAAGGAA-GAGCCTTTGAGATTGTTCAGTTTAGCTTCTAAAACTAATAAT 905
Query 1219 AGAAAAAGCAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACAG-AGTTTTT 1277
|| | || |||| | ||| || | |||||| | | ||||||||| | | || ||
Sbjct 906 AGTAGAATTAAACTTGATTCACTGGATTTGAGGAA-TGC--AGAGAAGACGGCA-TTCTT 961
Query 1278 GTTGAGGCTAGGGTATGTAGAAAACTCGGATGAGATGGTGA-AGGCTCT-AAAACAGTTT 1335
||||| ||||||||||||||| || || ||||||||||||| || |||| |||| |||||
Sbjct 962 GTTGAAGCTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGAG-CTCTGAAAA-AGTTT 1019
Query 1336 CGAGGGAGGGGAGATCAGCTACAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAAC 1395
| ||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||
Sbjct 1020 CAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTGAAGGCTGGTTTGGAC 1079
Query 1396 TATAATGTGGTTA-CTGAGATCATCAGGCATGCTCCG-ATGATACTTAACCTGTCTAAAG 1453
||||||||||||| | || | | | || || || || || ||||||| | | ||||
Sbjct 1080 TATAATGTGGTTAGCC-AGCTTGTTAAGCGGGCGCCTCAT-ATGCTTAACCGGCCGAAAG 1137
Query 1454 ATGTCATAGAGAAA-AAGATACA-T-TCCTTAACCGAACTTCTT-GGCT-ATCCAATTGA 1508
| ||||||| ||| ||||| || | | || ||| || || || || | ||||||||||
Sbjct 1138 GTATCATAGA-AAAGAAGAT-CAATATGCT-AACAGA--TTATTTGGGTTATCCAATTGA 1192
Query 1509 ATCATTGGTA-AGGTTCCCGGCATATCTGTGTTAT-GATATGCAGAGGATACATCACAGA 1566
||| || || || | ||| ||||| |||||||| | |||| |||| ||||||||||||
Sbjct 1193 ATCCGTGATAGAG-TCCCCAACATATTTGTGTTATAG-TATGGAGAGAATACATCACAGA 1250
Query 1567 TTCTCAATGTAT-TTATGGTTGAGGGAAAGAGATGCAGCAAAGCCAATGCTGTCACCAAG 1625
||||||||||| || ||||||| |||||||||||||||| ||| | |||| ||| | |
Sbjct 1251 TTCTCAATGTACATT-TGGTTGAAAGAAAGAGATGCAGCAATGCCGAGGCTGACACTAGG 1309
Query 1626 CACTAT--TC--TCACTTGCGGTGATGCCCGGTTTGTGA-AGTATTTTGTCAATGTCCAC 1680
|||||| || | | || | | | | | |||||| | || ||||||||| ||||
Sbjct 1310 CACTATAGTCGGT-ATTTCCAAT-A--CACTTTTTGTGTCA-TACTTTGTCAATACCCAC 1364
Query 1681 CCTGAAGGTCCAGCCATTTGGGAAAGTATAAACCAATCATCTACCTGAAGT 1731
|||||||||| ||| | |||||||| |||||| || ||||||||||||||
Sbjct 1365 CCTGAAGGTCGAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGAAGT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5