BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19660.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890208 jgi|Araly1|890208|Al_scaffold_0007_2194 2667 0.0
Ahg494469 jgi|Araly1|494469|fgenesh2_kg.8__285__AT5G45110.1 898 0.0
> Ahg890208 jgi|Araly1|890208|Al_scaffold_0007_2194
Length=1743
Score = 2667 bits (1444), Expect = 0.0
Identities = 1645/1741 (94%), Gaps = 18/1741 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCAACTGCAATAGAGCCATCTTCATCTATAAGTTTCACATCTTCTCACTTATCA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCAACTGCAATGGAGCCATCTTCATCTATAAGTTTCACATCTTCTCACTTATCA 60
Query 61 AACCCTTCTCCTGTTGTTACTACTTATCACTCAGCTGCTAATCTTGAAGAGCTCAGCTCT 120
|| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 AATCCTTCTCCTGTTGTTACTACTTATCAGTCAGCTGCTTATCTGGAAGAGCTCAGCTCT 120
Query 121 AACTTGGAGCAGCTTCTCACTAATCCAGATTGCGATTACACTGACGCAGAGATCATCATT 180
||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||
Sbjct 121 AACTTGGAGCAGCTTCTCACTAACCCAGATTGCGATTATACCGACGCAGAGATCATTATT 180
Query 181 GAAGAAGAAGCTAACCCTGTGAGTGTTCATAGATGTGTTTTAGCTGCTAGGAGCAAGTTT 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GAAGAAGAGGCTAACCCTGTGAGTGTTCATAGATGTGTTTTAGCTGCAAGGAGCAAGTTT 240
Query 241 TTTCTTGATCTGTTTAAGAAAGATAAAG--A-TAGT------AGTGAGAAGAAACCTAAG 291
|||||||||||||| ||||||||||||| | |||| |||||||||||||| |||
Sbjct 241 TTTCTTGATCTGTTCAAGAAAGATAAAGATAGTAGTGCAAAGAGTGAGAAGAAACCAAAG 300
Query 292 TATCAAATGAAAGATTTATTACCATATGGAAATGTGGGACGTGAGGCATTTCTGCATTTC 351
|||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 301 TATCAAATGAAAGAGTTGTTACCTTATGGAAATGTGGGACGCGAGGCCTTCCTGCATTTC 360
Query 352 TTGAGCTATATCTACACTGGGAGGTTAAAGCCTTTTCCTATCGAGGTTTCAACTTGTGTT 411
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTGAACTATATCTACACTGGGAGGTTAAAGCCTTTTCCTATCGAGGTTTCGACTTGTGTT 420
Query 412 GATTCAGTTTGTGCTCATGATTCTTGTAAACCGGCCATTGATTTTGCTGTTGAGTTGATG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTCAGTTTGTGCTCATGATTCTTGTAAACCGGCCATTGATTTTGCTGTTGAGTTGATG 480
Query 472 TATGCTTCATTTGTGTTCCAAATCCCGGATCTTGTTTCGTCATTTCAGCGGAAGCTTCGT 531
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct 481 TATGCTTCATTTGTGTTCCAAATCCCGGACCTGGTTTCATCATTTCAGCGGAAGCTTTGT 540
Query 532 AACTATGTTGAGAAGTCACTAGTAGAGAATGTTCTTCCTATCCTCTTAGTTGCGTTTCAT 591
| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 541 AGCTATGTTGGGAAGTCACTAGTTGAGAATGTTCTTCCGATCCTCTTAGTTGCGTTTCAT 600
Query 592 TGTGATTTGACACAGCTTCTTGATCAATGCATTGAGAGAGTGGCGAGATCAGACTTAGAC 651
||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 601 TGTGATTTGACGCAGCTTCTTGATCAATGCATAGAGAGAGTGGCTAGATCAGATTTAGAC 660
Query 652 AGATTCTGTATCGAAAAGGAGCTTCCTTTAGAAGTATTGGAAAAAATCAAACAGCTTCGA 711
|||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 661 AGATTCTGCATTGAAAAGGAGCTTCCTTTCGAAGTATCGGAAAAAATCAAACAGCTTCGA 720
Query 712 GTTAAGTCGGTGAACATACCCGAGGTGGAGGATAAATCGATAGAGAGAACAGGGAAAGTA 771
|||||||||||||||||||| |||| || |||||||||| |||||||||| |||||||||
Sbjct 721 GTTAAGTCGGTGAACATACCTGAGGAGGTGGATAAATCGCTAGAGAGAACCGGGAAAGTA 780
Query 772 CTCAAGGCATTGGATTCAGATGATGTAGAACTCGTGAAGCTTCTTTTGACTGAGTCAGAT 831
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 CTCAAGGCATTGGATTCAGATGATGTGGAACTCGTGAAGCTTCTTTTGACTGAGTCAGAT 840
Query 832 ATAACTCTAGACCAAGCCAATGGTCTACATTATGCAGTGGCATACAGTGATCCGAAAGTT 891
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 841 ATAACTCTAGACCAAGCCAATGGTCTGCATTATGCAGTGGCTTACAGTGATCCGAAAGTT 900
Query 892 GTGACACAGGTTCTTGATCTAGATATGGCTGATGTTAATTTCAGAAATTCCAGGGGGTAT 951
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GTGACCCAGGTTCTTGATCTAAATATGGCTGATGTTAATTTCAGAAATTCCAGAGGGTAT 960
Query 952 ACGGTTCTTCATATTGCTGCTATGCGTAGAGAGCCAACAATTATCATACCACTTATTCAA 1011
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 ACAGTTCTTCATATTGCTGCTATGCGTAGAGAGCCAACAATTATTATACCACTTATTCAA 1020
Query 1012 AAAGGAGCTAATGCTTCAGATTTCACGTTTGATGGACGCAGTGCGGTAAATATATGTAGG 1071
||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 AAAGGAGCTCATGCTTCGGATTTCACGTTTGATGGACGCAGTGCGGTTAATATATGTAGG 1080
Query 1072 AGACTCACTAGGCCGAAAGATTATCATACCAAAACCTCAAGGAAAGAACCTAGTAAATAC 1131
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1081 AGACTCACTAGGCCAAAAGATTATCATAGCAAAACCTCAAGGAAAGAACCTAGTAAAGAC 1140
Query 1132 CGCTTATGCATCGATATCTTGGAAAGGGAAATTAGAAGGAATCCATTGGTTAGTGGGGAT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CGCTTATGCATCGATATCTTGGAAAGGGAAATTAGAAGGAATCCATTGGTTAGTGGGGAT 1200
Query 1192 ACACCCACTTGTTCCCATTCGATGCCCGAGGATCTCCAAATGAGGTTGTTATACTTAGAA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACACCCACTTGTTCCCATTCGATGCCCGAGGATCTCCAAATGAGGTTGTTATACTTAGAA 1260
Query 1252 AAGCGAGTGGGACTTGCTCAGTTGTTCTTCCCAGCAGAAGCCAATGTGGCTATGGACGTT 1311
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1261 AAGCGAGTGGGACTTGCTCAGTTGTTCTTCCCAGCAGAAGCTAATGTGGCCATGGACGTT 1320
Query 1312 GCTAATGTTGAAGGGACAAGCGAGTGCACAGGTCTTCTAACTCCACCTCCATCAAATGAT 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1321 GCTAATGTTGAAGGGACAAGCGAGTGCACAGGTCTTCTAACTCCACCTCCATCAAATGGT 1380
Query 1372 ACAACTGAAAACTTGGGTAAAGTCGATTTAAATGAAACGCCTTATGTGCAAACGAAAAGA 1431
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ACAACCGGAAACTTGGGTAAAGTCGATTTAAATGAAACGCCTTATGTGCAAACGAAAAGA 1440
Query 1432 ATGCTTACACGTATGAAAGCCCTCATGAAAACAGTTGAGACAGGTCGGAGATACTTCCCA 1491
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1441 ATGCTTACACGTATGGAAGCCCTCATGAAAACAGTTGAGACAGGTCGGAGGTATTTCCCA 1500
Query 1492 TCTTGTTATGAGGTTCTGGATAAGTACATGGATCAGTATATGGACGAAGAAATCCCTGAT 1551
||||||| ||||||||| |||| | |||||||| |||||||||||||||| |||||||||
Sbjct 1501 TCTTGTTCTGAGGTTCTTGATAGGCACATGGATGAGTATATGGACGAAGACATCCCTGAT 1560
Query 1552 ATGTCGTATCCCGAGAAAGGCACTGTGAAAGAGAGAAGACAGAAGAGGATGAGATATAAC 1611
||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1561 ATGTCACATCCCGAAAAAGGCACTGTGAAAGAGAGAAGACAGAAGAGAATGAGATATAAC 1620
Query 1612 GAGCTGAAGAACGACGTTAAAAAAGCATATAGCAAAGACAAAG---------TCGCGCGG 1662
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 1621 GAGCTGAAGAACGACGTTAAGAAAGCGTATAGCAAAGACAAAGAGGCCAAGATCGCGCGG 1680
Query 1663 TCTTGTCTTTCTTCTTCATCACCAGCTTCTTCTCTTAGAGAAGCCTTAGAGAATCCAACA 1722
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1681 TCTTGTCTTTCTTCTTCATCACCAGCTTCTTCTCATAGAGAAGCCTTAGAGAACCCAACA 1740
Query 1723 T 1723
|
Sbjct 1741 T 1741
> Ahg494469 jgi|Araly1|494469|fgenesh2_kg.8__285__AT5G45110.1
Length=2347
Score = 898 bits (486), Expect = 0.0
Identities = 1282/1651 (78%), Gaps = 115/1651 (7%)
Strand=Plus/Plus
Query 112 CTCAGCTCTAA-CTTGGAGCAGCTTCTCACTAATCCAGATTGCGATTACACTGACGCAGA 170
|||||||| || ||| ||||||||||| | ||||||||||| ||||||| ||| |||||
Sbjct 526 CTCAGCTCCAATCTT-GAGCAGCTTCTTAATAATCCAGATTTTGATTACAGTGATGCAGA 584
Query 171 GATCATCATTGAAGAAGAAGCTAACCCTG-TGAGTGTTCATAGATGTGTTTTAGCTGCTA 229
|||||| |||| | | | | || | || ||||||||||||| |||||||||| |
Sbjct 585 GATCATTGTTGATG--G-TG-T--TCCGGTTG-GTGTTCATAGATGCATTTTAGCTGCAA 637
Query 230 GGAGCAAGTTTTTTCTTG-ATCTGTTTAAGAAAGATAAAGATAGTAGT-G-AGA---AGA 283
| || |||||||| | | || |||| |||||||| |||| | || | | | | |||
Sbjct 638 GAAGTAAGTTTTTCCAAGAAT-TGTTCAAGAAAGA-GAAGAAAATA-TCGAAAACTGAGA 694
Query 284 AACCTAAGTATCAAATGAAAGATTTATTACCATATGGAAATGTGGGACGTGAGGCATTTC 343
|||||||||| || ||||||| | ||||| |||||| ||| || | ||| || ||||
Sbjct 695 AACCTAAGTACCAGTTGAAAGAGATGTTACCTTATGGAGCTGTTGGTCATGAAGC-TTTC 753
Query 344 -TGCATTTCTTGAGCTATATCTACACTGGGAGGTTAAAGCCTTTTCCTATCGAGGTTTCA 402
|| |||||||||| ||||||||||||||||| |||||||| ||| || | || |||||
Sbjct 754 TTGTATTTCTTGAGTTATATCTACACTGGGAGATTAAAGCCATTTGCTTTGGAAGTTTCG 813
Query 403 ACTTGTGTTGATTCAGTTTGTGCTCATGATTCTTGTAAACCGGCCATTGATTTTGCTGTT 462
|||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 814 ACTTGTGTTGATCCAGTTTGTGCTCATGATTCTTGTCGACCTGCCATTGATTTTGTTGTT 873
Query 463 GAGTTGATGTATGCTTCATTTGTGT-TCCAAATCCCGGATCTTGTTTCGTCATTTCAGCG 521
| |||||||||||||||| ||| | ||||| | || || || ||||| || |||||||
Sbjct 874 CAATTGATGTATGCTTCATCTGT-TCTCCAAGTGCCTGAGCTAGTTTCATCTTTTCAGC- 931
Query 522 GA-AGCTTCGTAACTATGTTGAGAAGTCACTAGTAGAGAATGTTCTTCCTATCCTCT-TA 579
|| |||| |||||| ||| |||||| | || || |||||||| ||||| ||||| | |
Sbjct 932 GACGGCTTTGTAACTTTGTGGAGAAGACCCTTGTTGAGAATGTGCTTCCGATCCT-TATG 990
Query 580 GTTGCGTTTC-ATTGTGATTTGACACAGCTTCTTGATCAATGCATTGAGAGAGTGGCGAG 638
|||||| ||| ||||| | ||||| ||||||||| |||| || |||||||||||||||||
Sbjct 991 GTTGCG-TTCAATTGTAAGTTGACTCAGCTTCTTAATCAGTGTATTGAGAGAGTGGCGAG 1049
Query 639 ATCAGA-CTTAGACAGATTCTGTATCGAAAAGG-AGCTTCCTT-TAGAAGTATTGGAAAA 695
||||| ||| |||| |||||||||||||||| || |||||| | |||||| || ||
Sbjct 1050 GTCAGATCTT-TACAGGTTCTGTATCGAAAAGGAAG-TTCCTTCT-GAAGTAGCAGAGAA 1106
Query 696 AATCAAACAGCTTCGAGTTAAGT-----C--G--G-TG-AA-CA-TACCCGAGGTGGAGG 742
|| |||||||||||| ||| || | | | | || || | ||| || | ||
Sbjct 1107 GATTAAACAGCTTCGACTTATGTCCCCGCAAGACGAAGAAACCAGT-CCCAAGATTTCGG 1165
Query 743 ATAAATCGATAGAGAGAA-CAGGGAAAGTACTCAAGGCATTGGATTCAGATGATGTAGAA 801
| |||| | | || |||| || | ||| | |||||||| ||||||||||||||||| ||
Sbjct 1166 AGAAATTGCTCGAAAGAATCA-GTAAAATTCTCAAGGCGTTGGATTCAGATGATGTTGAG 1224
Query 802 CTCGTGAAGCTTCTTTTGACTGAGTCAGATATAACTCTAGACCAAGCCAATGGTCTACAT 861
|| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||
Sbjct 1225 CTTGTGAAGCTTCTTTTGACTGAGTCAGATATCACTTTAGATCAAGCCAATGGTCTGCAT 1284
Query 862 TATGCAGTGGCATACAGTGATCCGAAAGTTGT-GACACAGGTTCTTGATCTAGA-TATGG 919
||| | |||| || ||||||||||||||||| | | || |||||| ||| || |||||
Sbjct 1285 TATTCTGTGGTGTATAGTGATCCGAAAGTTGTTGCCG-AGATTCTTGCTCT-GAATATGG 1342
Query 920 CTGATGTTAATTT-CAGAAATTCCAGGGGGTATACGGTTCTTCATATTGCTGCTATGCGT 978
||| || ||||| | ||| | || |||| ||||| ||||||||| ||||||| ||||||
Sbjct 1343 GTGACGTGAATTTTCGGAACTCCC-GGGGTTATACTGTTCTTCATTTTGCTGCGATGCGT 1401
Query 979 AGAGAGCCAACAATTATCATACCACTTATTCAAA-AAGGAGCTAATGCTTCAGA-TTTCA 1036
||||||||| | || || ||| | ||||| | | |||| || ||||| || || ||| |
Sbjct 1402 AGAGAGCCATCGATCATTATATCGCTTAT-CGATGAAGGCGCCAATGCATCTGAGTTT-A 1459
Query 1037 CGTTTGATGGACGCAGTGCGGTAAATATAT-GTAGGAGACTCACTAGGCCGAAAG-ATTA 1094
| | ||| |||||||| || || ||||||| | || ||||| || | || |||| ||||
Sbjct 1460 CATCTGACGGACGCAGCGCAGTTAATATATTG-AGAAGACTGACAAATCC-AAAGGATTA 1517
Query 1095 TCATACCAAAACCTC-AA-GGAAA-GAACCTAGTAAA--TACCGCTTATGCATCGATATC 1149
|||||||||||| | || || ||| |||||||| || | |||||||||||||||
Sbjct 1518 TCATACCAAAACAGCGAAAGGGCGTGAATCTAGTAAAGCTAG-G-TTATGCATCGATATC 1575
Query 1150 TTGGAAAGGGAAATTAG-AAGGAATCC-ATTGGTTAGTGGGGATACACCCACT-TGTTCC 1206
|||||||| ||||| || ||| || || || |||| ||| ||||||| | | ||||||
Sbjct 1576 TTGGAAAGAGAAATCAGGAAG-AACCCCAT-GGTTC-TGG--ATACACCAA-TGTGTTCC 1629
Query 1207 CATTCGATGCCCGAGGATCTCCAAATGAGGTTGTTATACTTAGAAAAGCGAGTGGGACTT 1266
| ||| ||||| || ||||| |||||||| || | ||| |||||||| ||||||| |||
Sbjct 1630 CTTTCTATGCCTGAAGATCTGCAAATGAGACTGATGTACCTAGAAAAGAGAGTGGGGCTT 1689
Query 1267 GCTCAGTTGTTCTTCCCAGCAGAAGCCAATGTGGCTATGGACGTTGCTAATGTTGAAGGG 1326
|||||||||||||| ||| | ||||| || |||||||||||| ||| ||| || |||||
Sbjct 1690 GCTCAGTTGTTCTTTCCAACGGAAGCTAAAGTGGCTATGGACATTGGTAACGTAGAAGGT 1749
Query 1327 ACAAGCGAGTGCACAGGTCTTCTAACTCCACCTCCATCAAATGA-TACAACTGAAAACTT 1385
||||| |||| ||| ||||| | | | | |||| || |||| | ||| | ||||||
Sbjct 1750 ACAAGTGAGTTCACGGGTCTGCCA-C-C-ACCT---TCGAATGGGTT-AACCGGAAACTT 1802
Query 1386 GGGTAAAGTCGATTTAAATGAAACGCCTTATGTGCAAACGAAAAGAATGCTTACACGTAT 1445
| | | || |||||||| ||||||||| || ||||||| |||||| | ||||| |||||
Sbjct 1803 GAATCAGGTTGATTTAAACGAAACGCCTGATATGCAAACCAAAAGACTTCTTACTCGTAT 1862
Query 1446 GAAAGCCCTCATGAAAACAGTTGAGACAGGTCGGAGATACTTCCCATCTTGTT-ATGAGG 1504
| | || || |||||||||||||| || ||||| || | || |||| | | | | | ||
Sbjct 1863 GGAGGCTCTAATGAAAACAGTTGATACTGGTCGAAGGTTTTTTCCATATGGCTCA-GCGG 1921
Query 1505 TTCTGGATAAGTACATGGATCAGTATATGGACGAAGAAATCCCT-GAT-ATGT-CGTATC 1561
|||| |||| |||||||| | |||| || |||||||| |||| | ||| || | ||| |
Sbjct 1922 TTCTAGATAGGTACATGGCTGAGTACATAGACGAAGACATCC-TAGATGATTTACGTTTT 1980
Query 1562 CCGAGAAAGGCACTGTGA-A-A-GAGAGAAGACAGAAGAGGATGAGATATA-ACGAGCTG 1617
||||| || | | | | | | || |||||| |||||| |||||||||| | |||||
Sbjct 1981 --GAGAAGGG-A-TCT-ACACATGAAAGAAGATTGAAGAGAATGAGATATAGA-GAGCTT 2034
Query 1618 AAGAACGACGTTAAAAAAGCATATAGCAAAGACAAAG--TC---G----CGCGGTCTTGT 1668
||| | || || |||| ||||||||||||||||||| || | |||||||||||
Sbjct 2035 AAGGATGATGTCCAAAAGGCATATAGCAAAGACAAAGAGTCTAAGATTGCGCGGTCTTGT 2094
Query 1669 CTTTCTTCTTCATCACCAGCTTCTTCT-CTT 1698
|||||| ||||||| | |||||||| |||
Sbjct 2095 CTTTCTGCTTCATCTTCTCCTTCTTCTTCTT 2125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5