BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19680.2
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492896 jgi|Araly1|492896|fgenesh2_kg.7__2329__AT4G19680.2 1781 0.0
Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2 298 7e-80
> Ahg492896 jgi|Araly1|492896|fgenesh2_kg.7__2329__AT4G19680.2
Length=1131
Score = 1781 bits (964), Expect = 0.0
Identities = 1079/1135 (95%), Gaps = 5/1135 (0%)
Strand=Plus/Plus
Query 3 AATACTAATGGCTACTACCAAGCTCGTCTACATTCTCCTCATCCTATTCACCTTCACCGT 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1 AATACTAATGGCTACTACCAAGCTCGTCTACATTCTCCTCATACTATTCACCTTCTCCGT 60
Query 63 ATCTCCGGCGATCTCAACGGCCCCGGAACATTGTGATAGCGGCTTTGATAACCCGTGCAT 122
|||||| |||||| ||||||||||||||||||| |||||||||| || || ||||||||
Sbjct 61 ATCTCCAGCGATCGCAACGGCCCCGGAACATTGCGATAGCGGCTCGGAGAATCCGTGCAT 120
Query 123 CAACAAAGCTAAGGCTTTACCACTCAAAATCGTAGCCATTGTTGCCATACTTACAACAAG 182
||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 121 CAACAAAGCTAAGGCCTTACCACTCAAAATCGTAGCCATTGTAGCCATCCTTACGACAAG 180
Query 183 CTTGATAGGCGTGACCTCTCCTCTTTTCAGCCGTTACATTTCGTTCCTCCGTCCCGATGG 242
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTTGATAGGCGTAACCTCTCCTCTTTTCAGCCGTTACATTTCGTTCCTCCGTCCTGATGG 240
Query 243 CAATGGTTTCATGATCGTCAAATGTTTTTCTTCTGGAATCATCCTTGGAACCGGTTTCAT 302
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CAATGGTTTCATGATCGTAAAATGTTTTTCTTCTGGAATCATCCTTGGAACCGGCTTCAT 300
Query 303 GCACGTCTTGCCTGACTCTTTCGAGATGTTGTCATCGAAATGTCTTAGTGATAATCCGTG 362
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 301 GCACGTCTTGCCTGACTCTTTCGAGATGTTGTCATCGAAATGTCTTAGCGATGGTCCGTG 360
Query 363 GCATAAGTTCCCTTTTGCGGGTTTTGTCGCTATGATGTCCGGTCTAGTCACTCTAGCCAT 422
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GCATAAGTTCCCTTTTGCGGGTTTTGTTGCTATGATGTCCGGTCTAGTCACTCTAGCCAT 420
Query 423 TGACTCCATTACCACCAGCCTTTATACCGGTAAGAACTCAGTCGGACCAGTGCCTGATGA 482
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 421 TGACTCCATTACCACCAGCCTTTATACCGGTAAGAACTCGGTCGGGCCAGTGCC---TGA 477
Query 483 AGAGTATGGCATTGATCAAGAGAAA-GCGATTCACATGGTAGGCCACAATCATAGTCACG 541
|||||| ||||||||||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 478 CGAGTATAGCATTGATCAAGA-AAAGGCGATTCACATTGTAGGTCACAATCACAGCCACG 536
Query 542 GTCATGGTGTAGTGCTAGCAACTAAAGATGATGGACAGCTTTTGCGCTACCAAGTCATTG 601
||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 537 GTCATGGAGTAGTGCTATCAACTAAAGATGATGGACAGCTTTTGCGCCACCGAGTCATTG 596
Query 602 CCATGGTATTGGAGGTTGGCATTTTATTTCATTCTGTGGTCATTGGACTATCTCTAGGAG 661
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 597 CCATGGTATTGGAGCTTGGGATTTTATTTCATTCAGTGGTCATTGGACTATCTCTAGGAG 656
Query 662 CAACTAATGATTCATGTACCATTAAAGGACTCATCATAGCTCTTTGCTTCCATCACTTGT 721
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 657 CAACTAATGATGCATGTACCATTAAAGGACTCATCATAGCCCTGTGCTTCCATCACTTGT 716
Query 722 TCGAAGGCATAGGTCTTGGTGGCTGCATCCTCCAGGCAGATTTTACAAATGTGAAGAAGT 781
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCGAAGGCATGGGTCTTGGTGGCTGCATCCTCCAGGCAGATTTTACAAATGTGAAGAAGT 776
Query 782 TCTTGATGGCATTCTTTTTCACTGGAACAACACCTTGTGGTATCTTTCTTGGAATCGCAT 841
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 777 TCTTGATGGCATTCTTTTTCGCTGGAACAACACCTTGTGGTATCTTTCTAGGAATCGTAT 836
Query 842 TGTCGAGTATCTATAGAGATAACAGTCCAACCGCGTTGATTACGATTGGACTGTTAAATG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGTCGAGTATCTATAGAGATAACAGTCCAACCGCGTTGATTACGATTGGACTGTTAAATG 896
Query 902 CTTGCTCGGCCGGAATGCTCATCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTTGCTCGGCCGGAATGCTCATCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCA 956
Query 962 TGGGGTCAATGCTCCAAGGTAGCATCAAACTTCAGATCAAGTGCTTCACGGCGGCTTTGC 1021
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 TGGGATCAATGCTCCAAGGTAGCATCAAACTTCAGATCAAGTGCTTCATGGCGGCTTTGC 1016
Query 1022 TTGGCTGCGCCGTAATGTCGGTCGTCGCCGTGTGGGCTTAAACACTCTTTCAACATAATC 1081
| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1017 TCGGCTGCGCCGTTATGTCGGTCGTCGCCGTGTGGGCTTAAACACTATATCAACATAATT 1076
Query 1082 AATAAATTATTTGATTTATTATTCAAGGCGACAAATACTTTCGCCTTTGTATATT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1077 AATAAATTATTTGATTTATTATTCAAGGCGACAAATACTTTCGCCTTTGTACATT 1131
> Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2
Length=1356
Score = 298 bits (161), Expect = 7e-80
Identities = 393/503 (78%), Gaps = 24/503 (5%)
Strand=Plus/Plus
Query 572 ATGGACAGCTTTTGCGCTACCAAGTCATTGCCATGGTATTGGAGGTTGGCATTTTATTTC 631
||| ||| || ||||| |||| ||||||||||||||| ||||| |||| || || |||
Sbjct 573 ATGCACAACTCTTGCGATACCGAGTCATTGCCATGGTGTTGGAACTTGGGATCATAGTTC 632
Query 632 ATTCTGTGGTCATTGGACTATCTCTAGGAGCAACTAATGATTCATGTACCATTAAAGGAC 691
| || ||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 633 ACTCGGTGGTCATTGGACTATCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGAC 692
Query 692 TCATCATAGCTCTTTGCTTCCATCACTTGTTCGAAGGCATAGGTCTTGGTGGCTGCATCC 751
||||| |||||||||||||||||| |||||||||| || |||||||| || ||||| |
Sbjct 693 TCATCGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGAATGGGTCTTGGGGGTTGCATAC 752
Query 752 TCCAGGCAGATTTTACAAATGTGAAGAAGTTC-TTGATGGCATTCTTTTTCACTG-GAAC 809
||||||| || | ||| ||| |||||||||| || ||||| |||||||| | | || |
Sbjct 753 TCCAGGCTGAGTATACGAATATGAAGAAGTTTGTT-ATGGCGTTCTTTTTTGCGGTGA-C 810
Query 810 AACACC-TTGTGGTAT--CTTTCTTGGAATCGCAT-TGTCGAGTATCTAT-AGAGATAAC 864
|||||| || || || | || ||| |||| | | || | | | || | ||||||
Sbjct 811 AACACCATTC-GGAATAGCGTTAG-GGA-TCGC-TCTATCAACTGTTTACCA-AGATAAT 865
Query 865 AGTCCAACCGCGTTGATTAC-GATTGGACTGT-TAAATGCTTGCTCGGCCGGAATGCTCA 922
|| |||| || ||||| || | ||||||| | | ||||| ||||| || ||| |||| |
Sbjct 866 AGCCCAAAAGCTTTGATCACAG-TTGGACT-TCTCAATGCATGCTCCGCTGGATTGCTTA 923
Query 923 TCTACATGGCCCTCGTCGACCTTCTAGCTACCGAGTTCATGGGGTCAATGCTCCAAGGTA 982
| ||||||||||| ||||| ||||||||| | || |||||||| ||| ||| |||||||
Sbjct 924 TTTACATGGCCCTTGTCGATCTTCTAGCTGCTGAATTCATGGGACCAAAGCTTCAAGGTA 983
Query 983 GCATCAAACTTCAGATCAAGTGCTTCA--CGGCGGCT-TTGCTTGGCTGCGCCGTAATGT 1039
|||||||| | ||| ||||||| || | || ||||| || || || |||| | |||||
Sbjct 984 GCATCAAAATGCAGTTCAAGTGTTT-AGTCG-CGGCTCTT-CTCGGGTGCGGTGGAATGT 1040
Query 1040 CGGTCGTCGCCGTGTGGGCTTAA 1062
|| | ||||| |||||||||
Sbjct 1041 CGATTATCGCCAAATGGGCTTAA 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5