BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19690.2
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2 2074 0.0
> Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2
Length=1356
Score = 2074 bits (1123), Expect = 0.0
Identities = 1287/1365 (94%), Gaps = 15/1365 (1%)
Strand=Plus/Plus
Query 17 aaaagaaaaaagaaa-aaaaaaaaaaaTGGCTTCAAATTCAGCACTTCTCATGAAAACAA 75
||| ||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAGGAAAAAA-AAAGAAAACAAAAAATGGCTTCAACTTCAGCACTTCTCATGAAAACAA 59
Query 76 TCTTCCTCGTACTCATTTTTGTCTCTTTTGCAATCTCTCCAGCAACTTCAACTGCGCCGG 135
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 60 TCTTCCTCGTACTCATTTTTGTCTCTTTCGCAATCTCTCCGGCAACTTCAACGGCGCCCG 119
Query 136 AAGAATGTGGAAGCGAGTCAGCGAACCCGTGCGTCAACAAAGCTAAAGCTTTGCCTCTCA 195
||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 120 AAGAATGCGGAAGCGAGTCAGCGAACCCATGCGTCAACAAAGCTAAAGTTTTGCCTCTCA 179
Query 196 AAGTCATAGCAATCTTCGTAATCCTCATTGCAAGCATGATTGGTGTTGGAGCTCCTCTCT 255
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATCATAGCAATCGTCGCAATCCTCATTGCAAGCATGATTGGTGTTGGAGCTCCTCTCT 239
Query 256 TTAGCCGTAACGTTTCGTTCCTCCAACCAGACGGAAACATCTTCACTATCATTAAGTGTT 315
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TTAGCCGTAACGTTCCGTTCCTCCAACCAGACGGAAACATCTTCACTATTATTAAGTGTT 299
Query 316 TCGCCTCCGGGATCATCCTTGGAACCGGTTTTATGCACGTTTTACCTGATTCTTTCGAAA 375
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 TCGCCTCCGGGTTCATCCTTGGAACCGGTTTTATGCACGTTTTGCCTGATTCTTTCGAAA 359
Query 376 TGTTGTCATCTATATGTCTTGAAGAGAACCCGTGGCATAAATTTCCTTTCTCCGGATTTC 435
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TGTTGTCATCTATATGTCTTGAAGAGAACCCATGGCATAAATTTCCTTTCTCCGGATTTC 419
Query 436 TCGCTATGTTATCGGGTCTAATCACTCTAGCCATTGACTCCATGGCCACGAGCCTATACA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 TCGCTATGTTATCGGGTCTAATCACTCTAGCCATTGACTCCATGGCCACGAGCCTCTACA 479
Query 496 CCAGCAAGAACGCAGTTGGTATCATGCCCCATGGTCATGGTCATGGTCACGGCCCCGCAA 555
| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||
Sbjct 480 CAAGCAAGAACGCAGTTGGAATCATGCCTCATGG--A----CATGGTCACGGCCCCGCAA 533
Query 556 ATGATGTTACCTTACCAATAAAAGAAGATGATTC-GTCAAATGCACAGCTCTTGCGATAC 614
|| |||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 534 ATAATGTCACCTTACCAATAAAAGAAGATGATTCCG-CAAATGCACAACTCTTGCGATAC 592
Query 615 CGAGTCATTGCCATGGTCTTGGAACTTGGGATCATAGTTCACTCGGTGGTCATTGGATTA 674
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 CGAGTCATTGCCATGGTGTTGGAACTTGGGATCATAGTTCACTCGGTGGTCATTGGACTA 652
Query 675 TCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGACTTATAGCAGCTCTTTGCTTC 734
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 653 TCTCTAGGAGCAACTAGTGACACTTGCACCATTAAAGGACTCATCGCAGCTCTTTGCTTC 712
Query 735 CATCAAATGTTCGAAGGCATGGGTCTTGGCGGTTGTATCCTCCAGGCTGAGTATACAAAT 794
||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 713 CATCAAATGTTCGAAGGAATGGGTCTTGGGGGTTGCATACTCCAGGCTGAGTATACGAAT 772
Query 795 ATGAAGAAATTTGTTATGGCGTTCTTTTTCGCGGTAACAACACCATTCGGAATAGCGTTA 854
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 773 ATGAAGAAGTTTGTTATGGCGTTCTTTTTTGCGGTGACAACACCATTCGGAATAGCGTTA 832
Query 855 GGGATCGCTCTATCAACTGTTTACCAAGATAATAGCCCAAAAGCTTTGATCACGGTTGGA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 GGGATCGCTCTATCAACTGTTTACCAAGATAATAGCCCAAAAGCTTTGATCACAGTTGGA 892
Query 915 CTTCTAAATGCATGCTCCGCTGGATTGCTCATTTACATGGCACTCGTGGATCTTCTAGCT 974
||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 893 CTTCTCAATGCATGCTCCGCTGGATTGCTTATTTACATGGCCCTTGTCGATCTTCTAGCT 952
Query 975 GCGGAGTTCATGGGACCTAAGCTTCAAGGTAGCATCAAAATGCAGTTCAAGTGTTTAATC 1034
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 953 GCTGAATTCATGGGACCAAAGCTTCAAGGTAGCATCAAAATGCAGTTCAAGTGTTTAGTC 1012
Query 1035 GCGGCTCTTCTCGGGTGCGGTGGAATGTCGATTATCGCCAAATGGGCTTAACTAATACTC 1094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1013 GCGGCTCTTCTCGGGTGCGGTGGAATGTCGATTATCGCCAAATGGGCTTAACTAATTCTC 1072
Query 1095 CAGATATTGCGGAA-TT-GAAATCATGTGGATTTCATTATCGAACTAAAA-CCGTTTTAG 1151
|| ||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1073 CACATATTAAGGAAATTTGAAATCATGTGGATTTCATTGTCGAACTAAAAACCGTTTTAG 1132
Query 1152 GTTTACGTCTCGATTCTCTATCGGTTTTTT-ATCTTCTCTTACAAAAGATTTGCGTGGAT 1210
||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||
Sbjct 1133 GTTTACGTCTCGATTCTCTATCGGTACTTTCATTTTCCCTTACAAAAGATTTGCGTGGAT 1192
Query 1211 CTATCACATTTTAAGGAACATGTCTTTTGGTAGATATGTAAATGTGATAGGCCCCACGAT 1270
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1193 CTATCACATTTTAAGGAACGTGTCTTTTGGTAGATATGTAAATGTGATAGGTCCCACGAT 1252
Query 1271 TCATAGTTTTCTTTTGTATCTTCCTTTATTTTGTCAAGGCAGTATAGTTCATATCGTGTA 1330
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1253 TCATAGTTTTTTTTT-TATCTTCCTTTATTTTGTCAAGGCAATATAGTTCATATCGTGTA 1311
Query 1331 ATGTTTTTGCATCTCATATAAATAAATAAAACTTTTGCTGCTTTT 1375
||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct 1312 ATGTTTTTGTATCTCATATATATAAATAAAACTTTTGTTGCTTTT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5