BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19700.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946204 jgi|Araly1|946204|scaffold_702433.1 1496 0.0
Ahg494472 jgi|Araly1|494472|fgenesh2_kg.8__288__AT5G45100.1 324 9e-88
> Ahg946204 jgi|Araly1|946204|scaffold_702433.1
Length=955
Score = 1496 bits (810), Expect = 0.0
Identities = 910/958 (95%), Gaps = 8/958 (1%)
Strand=Plus/Plus
Query 54 GGAGCTTTTTTCAACAACAATGGCTGTTCAAGCTCATCACATGAACATTTTCTCTCAGTT 113
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2 GGAGCTTTTTACAACAACAATGGCTGTTCAAGCTCATCACATGAACATTTTCTCTCAGCT 61
Query 114 TATATCACCAAACAGAGATTGTGTTAAATTTCAAGAAAACATGAACCACGGCGAGTTTGA 173
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 62 AATATCATCAAACAGAGATTGTGTTAAATTTCAAGAAAACATGAATCACGGCGAGTTTGA 121
Query 174 GT-TTACCGGCGGTGAAGTTCCGTTAATAACCGGAGAATCTTTCGCCGTTGAGCCTTTAG 232
| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 122 -TATTACCGGCGGTGAAGTTCCGTTAATAACTGGAGAATCTTTCGCCGTCGACCCTTTAG 180
Query 233 CTGCGAAAGCCAACTTCAACAAAGCAGAAAGTGGTCTCAGTTACAATTTCACTGTTCCTC 292
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 181 CTGCGAAAGCCAACTTCAACAAATCAGAAAGTGGTCTCAGTTACAACTTCACTGTTCCTC 240
Query 293 CTCTGTCTACAAAACGCCAGCGAGATTTTCAATTCTC-AGACTCAAACGCTCCGGTTAAA 351
||| ||||||||||||| |||||| ||||||||| | |||||||||||||||||||||
Sbjct 241 CTCCATCTACAAAACGCCCGCGAGAGTTTCAATTC-CGTGACTCAAACGCTCCGGTTAAA 299
Query 352 CGGAGGTCCGTAGCGTTTGACTCATCATCACCGTCGTTGATAAACGTTGAACTCGTATCT 411
||||||||||| |||||||||||| || |||||||||||||||||| ||||||||| |||
Sbjct 300 CGGAGGTCCGTCGCGTTTGACTCACCACCACCGTCGTTGATAAACGCTGAACTCGTCTCT 359
Query 412 CAGATTCAAAACCAACAACAGTCAGAGATCGATAGGTTCGTAGCTCAGCAAACGGAGAAG 471
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 360 CAGATTCAAAACCAACAACAATCAGAGATTGATAGGTTCGTAGCTCAGCAAACAGAGAAG 419
Query 472 CTAAGAATAGAGATTGAAGCAAGGCAACAAACGCAAACGCGGATGTTAGCGTCTGCGGTT 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CTAAGAATAGAGATTGAAGCAAGGCAACAAACGCAAACGCGGATGTTAGCATCTGCGGTT 479
Query 532 CAAAACGTTATAGCCAAGAAACTAAAAGAGAAAGACGATGAAATCGTACGGATTCGAAAC 591
||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 480 CAAAACGCTATAGCCAAGAAACTAAAAGAGAAAGACGACGAAATCGTACGGATTAGAAAC 539
Query 592 CTAAACTGGGTTTTACAAGAGAGGGTGAAGAGTCTTTACGTCGAAAATCAGATTTGGCGT 651
|| |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 540 CTTAACTGGGTTTTACAAGAGCGAGTGAAGAGTCTTTACGTCGAAACTCAGATTTGGCGT 599
Query 652 GATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGAACAAACCTAGACCAAGTT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGAACAAACCTAGACCAAGTT 659
Query 712 CTTGCTCAACTCGAAACGTTTCCAACCGCTTCAGCCGTTGTAGAAGACGATGCGGAATCG 771
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 660 CTTGCTCAAATCGAAACGTTTCCAACCGCTTCAGCCGTTGTAGAAGACGACGTGGAATCG 719
Query 772 AGTTGTGGAAGTTGTTgcggtgatggtggtggtgaagcggtaacggcggttggtggtggt 831
|||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 720 AGTTGTGGAAGTTGCTGCGGTGATGGTGGTGGTGAAGCGGTTACGGCGGTTAGTGGTGGT 779
Query 832 tgtaaacggtgcggtgAGAGAGAAGCGAGTGTGTTGGTGTTACCATGTCGTCATTTGTGT 891
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCAAACGGTGCGGTGAGAGAGAAGCGAGTGTGTTGGTGTTACCATGTCGTCATTTGTGT 839
Query 892 TTGTGTACGGTTTGTGGTGGTTCGGCTTTGTTACGGACTTGTCCGGTTTGCGATAT-GGT 950
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 840 TTGTGTACGGTTTGTGGTGGTTCGGCTTTGTTACGGACTTGTCCAGTTTGCGAT-TCGGT 898
Query 951 CATGAACGCTAGTGTGCATGTTAACATGTCTTCTTGACCATCttttttttttgttcgt 1008
||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 899 CATGAACGCTAGTGTGCATGTTAACATGTCTTCTTGACCAT-TTTCTTTTTT-TTCGT 954
> Ahg494472 jgi|Araly1|494472|fgenesh2_kg.8__288__AT5G45100.1
Length=1017
Score = 324 bits (175), Expect = 9e-88
Identities = 471/607 (78%), Gaps = 48/607 (8%)
Strand=Plus/Plus
Query 409 TCTCAGATTCAAAACCAACAACAGTCAGAGATCGATAGGTTCG-TAGCT-CAGCAAACGG 466
|||||||||||| | ||| ||| ||||| |||||||| |||| || | || |||||||
Sbjct 332 TCTCAGATTCAACAGCAA-AAC--TCAGAAATCGATAGATTCGTTA--TGCAACAAACGG 386
Query 467 AGAA-GCTAAGAATAGAGATT-GAAGCAAGGCAACA-AACGCAAACGCGGATGTTAGCGT 523
| || | | ||||| || ||| ||||| || ||| | ||||||||||||||||||||||
Sbjct 387 A-AACGTTGAGAATCGA-ATTAGAAGCGAGACAA-AGAACGCAAACGCGGATGTTAGCGA 443
Query 524 CTGCGGTTCAAAACGTTATAGCCAAGAAA-CTAAAAGAGAAAGACGATGAAATCGTACGG 582
| ||||| ||||||| || || ||| ||||||||||||||||| || || || |
Sbjct 444 CAGCGGTACAAAACGCGATTTTGAA-AAAGCTAAAAGAGAAAGACGAAGAGATAATAAGA 502
Query 583 AT-TCGAAACCTAAACTGGGTTTTACAAGAGA-GGGTGAAGAGTCTTTACGTCGAAAATC 640
|| |||| ||||||||||||||||||| | | ||||||| ||| ||||| || ||||
Sbjct 503 ATGGGGAAA-TTAAACTGGGTTTTACAAGA-ACGTGTGAAGAATCTCTACGTTGAGAATC 560
Query 641 AGATTTGGCGTGATATCGCTCAAACCAACGAAGCAAAC-GCTAATACTCTTCGAACAAAC 699
|||| ||||||||| | || |||| || ||||| || || |||| |||| || ||||
Sbjct 561 AGATCTGGCGTGATTTAGCACAAAGTAATGAAGC-TACTGCGAATAATCTTAGATCAAAT 619
Query 700 CTAGACCAAGTTCTT-GCTCAACTCGAAACG-TTTCCAACCGCTTC--AG-CCGTT-GTA 753
|| || |||||| || |||||| | | | | ||| | || ||| | || || ||
Sbjct 620 CTTGAACAAGTT-TTAGCTCAAGTTG--ATGATTTTGATGCGTTTCGTCGTCCTTTGGTT 676
Query 754 GAAGACGATGCGGAATCGAGTTGTGGAAGTTGTTgcggtgatggtggtggtgaagcggta 813
||||| || || ||||| || ||||||| ||| |||| || |||||| |||
Sbjct 677 GAAGAAGACGCAGAATCTAGCTGTGGAA---GTT---GTGA---CGGAGGTGAA---GTA 724
Query 814 acggcggttggtggtggttgtaaacggtgcggtgAGAGAGA-AGCGAGTGTGTTGGTGTT 872
||||||||| || || |||| |||||||||||| | | |||||||||||||||||
Sbjct 725 ACGGCGGTTAACGGAGGGTGTAGACGGTGCGGTGATTTA-ACGGCGAGTGTGTTGGTGTT 783
Query 873 ACCATGTCGTCATTTGTGTTTGTGTACGGTTTGTGG-TGGTTCGGCTTTGTTACGGACTT 931
|| |||||||||||||||||||||||||||||||| | || |||||||||||| ||| |
Sbjct 784 GCCTTGTCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGT-CGGCTTTGTTACAGACGT 842
Query 932 GTCCGGTTTGCGATATGGTCATGAAC-GCTAGTGTGCATGTTAACATGTCTTCTTGACCA 990
|||| || || ||||||||||||| | |||||||| |||||||||||||| || ||||||
Sbjct 843 GTCCTGTATGTGATATGGTCATGA-CTGCTAGTGTACATGTTAACATGTCATCATGACCA 901
Query 991 TCttttt 997
| |||||
Sbjct 902 TGTTTTT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5