BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19710.2
Length=3160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492891 jgi|Araly1|492891|fgenesh2_kg.7__2324__AT4G19710.2 4715 0.0
Ahg473611 jgi|Araly1|473611|fgenesh2_kg.1__3565__AT1G31230.1 1459 0.0
> Ahg492891 jgi|Araly1|492891|fgenesh2_kg.7__2324__AT4G19710.2
Length=3120
Score = 4715 bits (2553), Expect = 0.0
Identities = 2913/3086 (94%), Gaps = 28/3086 (1%)
Strand=Plus/Plus
Query 90 TTAAACCTTTTGA-C-TTAAT-TCAAAGCCGTACAACt-ttttttGTTCGCCGCCGCGTC 145
||||||||||||| | ||| | ||||||||||| || ||| | ||||||| || |||
Sbjct 41 TTAAACCTTTTGACCAACAATATAAAAGCCGTACACCTAATTTAT-TTCGCCGTCGGGTC 99
Query 146 GCCGGAAAATCATCACCGTATATGCGATAAACATGGCGACTCTGAAGCCGTCATTTACTG 205
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 100 GCCGGAAAATCATCACTGTATATGCGATAAACATGGCGACTCTGAAGTCGTCATTTACTG 159
Query 206 TTTCTCCGCCGAATAGTAATCCGATTAGATTTGGAAGTTTTCCGCCGCAATGCTTTCTCC 265
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 160 TTTCTCCGCCGAATAGTAATCCGATTAGATTTGGATGTTTTCCGCCGCAATGCTTTCTCC 219
Query 266 GTGTTCCGAAA---CC----G--CGG---CGACTTATATTGCCTAGGTTTCGGAAGACGA 313
|||| |||||| || | ||| |||||| |||| || ||||||||| ||| |
Sbjct 220 GTGTCCCGAAACCGCCTTGTGTCCGGAAACGACTTGTATTTCCCAGGTTTCGGCGGACTA 279
Query 314 ---CTGGTGGTGGCGGCGGCTTGATTCGATGTGAGCTTCCAGATTTTCATCTATCAGCAA 370
|||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 280 TTGGTGGTGGTGGCGGTGGTTTGATTCGTTGTGAGCTTCCGGATTTTCATCTATCAGCTA 339
Query 371 CAGCAACTACTGTATCAGGTGTATCGACGGTGAATTT-AGTGGATCAAGTTCAGATTCCT 429
||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 340 CAGCAACTACTGTTTCAGGTGTATCGACGGTG-ATTTCCGTGGATCAAGTTCAGATTCCT 398
Query 430 AAAGGTGAAATGTGGAGTGTTCACAAGTTTGGTGGGACTTGTGTGGGAAACTCTCAGAGG 489
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 399 AAAGGTGAAATGTGGAGTGTTCATAAGTTTGGTGGGACTTGTGTGGGAAATTCTCAGAGG 458
Query 490 ATCAGAAATGTAGCAGAGGTTATAATCAATGATAATTCCGAAAGAAAACTTGTGGTTGTC 549
|| || ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 459 ATTAGGAATGTAGCAGAGGTTATAATCAATGATAACTCGGAAAGGAAACTTGTGGTTGTC 518
Query 550 TCGGCGATGTCGAAGGTTACGGACATGATGTATGACTTAATCCGCAAGGCACAATCACGA 609
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 519 TCGGCGATGTCGAAGGTGACGGATATGATGTATGACTTAATCCGCAAGGCACAATCACGA 578
Query 610 GATGATTCTTATTTATCCGCGTTGGAAGCTGTCTTGGAAAAGCATCGTTTAACAGCTCGT 669
|||||||||||| | ||||||||||||||||||||||||||||| || || |||||||||
Sbjct 579 GATGATTCTTATCTGTCCGCGTTGGAAGCTGTCTTGGAAAAGCACCGGTTGACAGCTCGT 638
Query 670 GACCTTCTCGATGGAGATGATCTCGCTAGTTTCTTGTCACATTTGCATAATGATATTAGT 729
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GACCTTCTCGATGGGGATGATCTCGCTAGTTTCTTGTCACATTTGCATAATGATATTAGT 698
Query 730 AATCTTAAAGCAATGCTTCGTGCTATATACATAGCTGGCCATGCATCAGAGTCGTTTTCA 789
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 699 AATCTTAAAGCAATGCTTCGTGCGATATACATAGCTGGCCATGCGTCAGAGTCGTTTTCA 758
Query 790 GATTTTGTTGCAGGACATGGGGAGCTTTGGTCTGCTCAGATGCTATCATATGTTGTCAGA 849
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 759 GATTTTGTTGCAGGACATGGAGAACTTTGGTCTGCTCAGATGCTATCATATGTTGTCAGA 818
Query 850 AAGACTGGGCTTGAGTGCAAGTGGATGGATACTAGAGACGTGCTCATTGTTAATCCCACC 909
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 819 AAGACTGGCCTTGAGTGCAAGTGGATGGATACTAGAGACGTGCTCATCGTTAATCCTACC 878
Query 910 AGCTCTAATCAGGTTGATCCTGATTTTGGTGAATCTGAGAAGAGACTCGATAAATGGTTC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 879 AGCTCTAATCAGGTTGATCCTGATTTTGGTGAATCTGAGAAGAGACTCGATAAGTGGTTC 938
Query 970 TCCTTAAATCCGTCGAAAATTATTATTGCGACTGGGTTTATTGCTAGCACTCCGCAAAAT 1029
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 939 TCCTTAAATCCGTCGAAAATTATTATTGCGACTGGGTTCATTGCTAGCACTCCGCAAAAC 998
Query 1030 ATTCCAACAACTTTGAAAAGAGATGGGAGTGATTTCTCAGCAGCTATTATGGGTGCTTTA 1089
||||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 999 ATTCCAACAACTTTGAAAAGAGATGGGAGTGATTTTTCTGCGGCTATTATGGGTGCTCTA 1058
Query 1090 TTGAGAGCTCGTCAAGTAACCATTTGGACAGATGTTGATGGTGTATACAGTGCGGATCCT 1149
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1059 TTGAGGGCTCGTCAAGTAACAATCTGGACAGATGTTGATGGTGTATACAGTGCGGATCCT 1118
Query 1150 CGTAAAGTTAATGAGGCAGTGATACTCCAGACACTTTCTTATCAAGAGGCCTGGGAAATG 1209
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1119 CGTAAAGTTAATGAGGCAGTAATTCTCCAGACACTTTCTTATCAGGAGGCCTGGGAAATG 1178
Query 1210 TCTTATTTTGGAGCAAATGTGTTACATCCTCGCACCATCATTCCTGTGATGCGATATAAT 1269
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1179 TCTTATTTTGGAGCAAATGTTTTACATCCTCGCACCATCATTCCTGTGATGCGGTATAAT 1238
Query 1270 ATTCCGATTGTGATTAGAAATATTTTCAATCTCTCTGCACCGGGAACAATAATCTGTCAA 1329
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 ATTCCGATTGTGATAAGAAATATTTTCAATCTCTCTGCACCGGGAACAATAATCTGTCAA 1298
Query 1330 CCTCCTGAAGATGATTATGACCTTAAACTGACAACTCCTGTCAAAGGGTTTGCAACTATT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CCTCCTGAAGATGATTATGACCTTAAACTGACAACTCCTGTCAAAGGGTTTGCAACTATT 1358
Query 1390 GACAATTTGGCCCTCATAAATGTTGAAGGTACTGGAATGGCTGGTGTACCCGGTACTGCA 1449
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GACAATTTGGCTCTCATAAATGTTGAAGGTACTGGAATGGCTGGTGTACCCGGTACTGCA 1418
Query 1450 AGTGACATTTTTGGCTGTGTAAAAGATGTTGGAGCTAATGTGATTATGATATCACAGGCT 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AGTGACATTTTTGGCTGTGTAAAAGATGTTGGAGCTAATGTGATTATGATATCACAGGCT 1478
Query 1510 AGCAGTGAGCATTCTGTGTGCTTTGCTGTGCCTGAGAAGGAAGTAAACGCAGTCTCTGAG 1569
||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1479 AGCAGTGAGCATTCTGTGTGCTTCGCTGTGCCTGAGAAGGAAGTAAATGCCGTTTCTGAG 1538
Query 1570 GCATTGCGGTCGAGATTTAGTGAAGCTTTACAAGCGGGACGTCTTTCTCAGATTGAGGTG 1629
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1539 GCACTACGGTCGAGATTTAGTGAAGCTTTACAAGCTGGACGTCTTTCTCAGATTGAGGTG 1598
Query 1630 ATACCAAACTGTAGCATCTTAGCTGCAGTCGGCCAGAAAATGGCTAGTACACCTGGAGTT 1689
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1599 ATACCTAACTGTAGCATCTTAGCTGCAGTCGGTCAGAAAATGGCTAGTACACCTGGAGTT 1658
Query 1690 AGTTGTACACTTTTCAGTGCTTTGGCGAAGGCTAATATTAATGTCCGAGCTATATCTCAA 1749
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1659 AGTTGTACACTTTTCAGTGCTTTGGCGAAGGCTAATATTAATGTCCGTGCTATATCGCAA 1718
Query 1750 GGTTGTTCTGAGTACAATGTTACTGTCGTTATTAAACGTGAAGATAGCGTTAAGGCGTTA 1809
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1719 GGTTGTTCTGAGTACAATGTTACTGTCGTAATTAAACGTGAAGATAGCGTTAAGGCATTA 1778
Query 1810 AGAGCTGTACACTCGAGGTTTTTCTTGTCAAGAACAACATTAGCAATGGGAATCGTAGGA 1869
|||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1779 AGAGCTGTGCACTCGAGGTTTTTCTTGTCAAGAACGACGTTAGCAATGGGAATCATAGGA 1838
Query 1870 CCGGGCTTGATTGGTGCAACATTACTTGACCAGCTGCGGGATCAGGCTGCTGTTCTCAAA 1929
||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1839 CCGGGCTTGATAGGTGCTACATTACTTGACCAGCTGAGGGACCAGGCTGCTGTTCTCAAA 1898
Query 1930 CAAGAATTTAACATTGATCTGCGTGTTTTGGGAATCACTGGTTCAAAGAAGATGTTATTG 1989
||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| | ||
Sbjct 1899 CAAGAATTTAATATTGATCTGCGTGTTATGGGAATCACTGGTTCAAAGACTATGCTCTTA 1958
Query 1990 AGTGACATTGGTATTGATTTGTCGAGATGGAGAGAACTTCTAAACGAGAAGGGAACAGAG 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 AGTGACATTGGTATTGATTTGTCGAGATGGAGAGAACTTCTAAACGAGAAGGGAACAGAG 2018
Query 2050 GCGGATTTGGATAAATTCACTCAACAAGTGCATGGAAATCATTTTATCCCCAACTCTGTA 2109
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GCCAATATGGATAAATTCACTCAACAAGTGCATGGAAATCATTTTATCCCCAACTCTGTA 2078
Query 2110 GTGGTTGATTGTACAGCAGACTCTGCTATTGCAAGCCGTTACTATGATTGGTTACGAAAG 2169
||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 2079 TTGGTTGATTGTACAGCAGATTCTGCTATTGCGAGCCATTACTATGATTGGTTACGAAAG 2138
Query 2170 GGAATTCATGTCATTACCCCAAATAAAAAGGCTAACTCAGGTCCCCTCGATCAGTACTTG 2229
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2139 GGAATCCACGTCATTACCCCAAATAAAAAGGCTAACTCAGGTCCCCTTGATCAGTACTTG 2198
Query 2230 AAACTGAGAGATCTTCAAAGGAAATCCTACACTCATTACTTCTACGAAGCCACTGTTGGA 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 AAACTGAGAGATCTTCAAAGGAAATCCTACACTCATTACTTCTACGAAGCCACTGTTGGA 2258
Query 2290 GCTGGTCTTCCAATTATCAGCACTTTACGTGGTCTCCTTGAGACAGGAGATAAGATACTA 2349
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2259 GCTGGTCTTCCTATTATCAGCACTTTACGTGGTCTCCTGGAGACAGGAGACAAGATACTA 2318
Query 2350 CGCATAGAGGGCATTTGCAGTGGAACTTTGAGTTATCTATTCAACAATTTTGTTGGAGAT 2409
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2319 CGCATAGAGGGCATTTGCAGTGGTACTTTGAGTTATCTATTCAACAACTTTGTTGGAGAT 2378
Query 2410 CGAAGTTTCAGCGAGGTTGTCACTGAAGCAAAGAACGCAGGTTTCACTGAGCCTGATCCA 2469
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 2379 CGAAGTTTCAGCGAGGTTGTCGCTGAAGCAAAGAATGCAGGTTTCACTGAGCCTGATCCA 2438
Query 2470 AGAGATGATTTATCTGGAACTGATGTTGCAAGGAAGGTGATTATCCTCGCTCGAGAATCT 2529
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2439 AGAGACGATTTATCTGGAACTGATGTTGCAAGGAAGGTGATAATCCTTGCTCGAGAATCC 2498
Query 2530 GGACTGAAATTGGACCTCGCTGATCTCCCCATTAGAAGTCTCGTACCAGAACCTCTAAAA 2589
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 2499 GGACTGAAATTGGACCTCACTGATCTTCCTATTAGAAGTCTCGTACCAGAACCTCTAAAA 2558
Query 2590 GGATGCACTTCTGTTGAAGAATTCATGGAGAAACTCCCACAGTACGATGGAGACCTAGCA 2649
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 GGATGCACTTCTGCTGAAGAATTCATGGAGAAACTCCCACAGTACGATGGAGACCTAGCA 2618
Query 2650 AAAGAAAGGCTAGATGCTGAAAACTCTGGGGAAGTTCTGAGATATGTTGGAGTGGTGGAC 2709
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2619 AAAGAAAGGCTAGAAGCTGAGAACTCTGGGGAAGTCCTGAGATATGTTGGAGTGGTGGAC 2678
Query 2710 GCTGTTAACCAAAAGGGAACAGTTGAACTTCGAAGATACAAGAAAGAACATCCATTTGCG 2769
|| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2679 GCAGTTAACCAGAAGGGAACCGTTGAACTTAGAAGATACAAGAAAGAACATCCATTTGCA 2738
Query 2770 CAGCTCGCAGGTTCAGACAACATAATAGCCTTCACAACGACAAGGTACAAGGATCATCCA 2829
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2739 CAGCTCGCAGGATCAGACAACATAATAGCATTCACAACGACAAGGTACAAGGATCATCCA 2798
Query 2830 CTTATAGTCCGAGGACCTGGAGCTGGTGCTCAAGTCACGGCCGGTGGTATATTCAGCGAC 2889
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2799 CTTATTGTCCGAGGACCTGGAGCTGGTGCTCAAGTCACGGCTGGTGGTATATTCAGCGAC 2858
Query 2890 ATACTAAGGCTTGCATCTTATCTCGGTGCACCGTCTTAACTGGTGAAGAAAACACCCCAC 2949
||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 2859 ATACTAAGGCTCGCATCTTATCTCGGTGCACCGTCTTAACCGGTGAAGAAAAC-CCCCGC 2917
Query 2950 ATTAGTTATCAGTTTTGCTAT-TATCTTCCCGCTTAAAGTATCAGCTTCGGATCAACTAC 3008
|||| ||||| |||||||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 2918 ATTAATTATCCGTTTTGCTATCTATCTTCCCGCTTAAAGTATCAGCTACGAATCAACAAC 2977
Query 3009 CTTTTGCTGGTCTTTGTAGTTTTTTGTGGTAACATGTACAATAGCAACTAGTTTTGTTGG 3068
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2978 TTTTTGCTGGTCTTTGTAGTTTTT-GTGGTAACATGTACAATAACAACTAGTTTTGTTGG 3036
Query 3069 ATATGTTTT-GAttttttttAATACAGTTTCATTTGTTTAATATTTACAAATCAAAACGA 3127
|| |||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 3037 ATTTGTTTTTGATTTTTT--AATAGAGTTTTATTTGTTTAATATTTACAAATCAAAACGA 3094
Query 3128 TTTGATATTTAATAAAAAGGAGCATT 3153
| || |||||||||||||||||||||
Sbjct 3095 TGTGCTATTTAATAAAAAGGAGCATT 3120
> Ahg473611 jgi|Araly1|473611|fgenesh2_kg.1__3565__AT1G31230.1
Length=2970
Score = 1459 bits (790), Expect = 0.0
Identities = 1977/2541 (78%), Gaps = 118/2541 (5%)
Strand=Plus/Plus
Query 447 TGTTCACAAGTTTGGTGGGACTTGTGTGGGAAACTCTCAGAGGATCAGAA--ATGTAGCA 504
||| ||||| ||||| || |||||||||||||| ||| ||||||| | || |||| ||
Sbjct 369 TGTACACAAATTTGGAGGAACTTGTGTGGGAAATTCTGAGAGGAT-A-AAGGATGTTGCT 426
Query 505 GAGGTTATAATCAATGATAATTCCGAAAGAAAACTT-GTGGTTGTCTCGGCGATGTCGAA 563
|| ||| | | || ||| | || || || || || |||||||| || || ||| ||||
Sbjct 427 GATGTTGTTGTTAAGGATGACTCTGAGAG-CAAGTTGGTGGTTGTGTCAGCAATGGCGAA 485
Query 564 GGTTACGGACATGATGTATGA-CTTAATCCGCAAG-GCACAATCACGAGATGATTCTTAT 621
|| || || ||||||||||| ||| || | | || ||||| || || |||||||| |||
Sbjct 486 AGTCACTGATATGATGTATGATCTT-ATTCAC-AGAGCACAGTCTCGGGATGATTCATAT 543
Query 622 TTATCCGCGTTGGAAGC--TG-TCTTGGAAAAGCATCGTTTAACAGCTCG-TGACCTT-C 676
| || || || | ||| || |||| |||||||| || ||| ||| | ||| ||| |
Sbjct 544 CTGTCTGC-TTTG-AGCGGTGTTCTT-GAAAAGCACCGAGCAACGGCT-GTTGA-CTTGC 598
Query 677 TCGATGGAGATGATCTCGCTAGTTTCTTGTCACATTTGCATAATGATATTAGTAATCTTA 736
| ||||||||||| ||||| |||||| || | | || || ||||||| | ||||| |
Sbjct 599 TTGATGGAGATGAACTCGCGAGTTTCCTGGCTCGGTTAAATGATGATATAAACAATCTCA 658
Query 737 AAGCAATGCTTCGTGCTATATACATAGCTGGCCATGCATCAGAGTCGTTT-TCAGATTTT 795
|||||||||||||||| || ||||||||||| |||||| | || || ||| ||||| |||
Sbjct 659 AAGCAATGCTTCGTGCCATTTACATAGCTGGTCATGCAACCGAATC-TTTCTCAGACTTT 717
Query 796 GTTGCAGGACATGGGGAGCTT-TGGTCTGCTCAGATGCTATCAT-ATGTTGTCAGAAAGA 853
|||| || || || ||| || ||||||||||||||| || | | |||||| |||||||
Sbjct 718 GTTGTTGGCCACGGAGAG-TTGTGGTCTGCTCAGATGTTAGC-TGCTGTTGTGAGAAAGA 775
Query 854 CTGGGCTT-GAGTGCA-AGTGGATGGATACTAGAGACGTGCTCATTGTTAATCCCACCAG 911
| || || || |||| | ||||||||| | || || ||||| |||||| ||| || ||
Sbjct 776 GT-GGATTGGACTGCACA-TGGATGGATGCAAGGGATGTGCTTGTTGTTAGTCCAACAAG 833
Query 912 CTCTAATCAGGTTGATCCTGATTTTGGT-GAATCTGAGAAGAGACTCGATAAATGGTTCT 970
||||||||| || || ||||| ||| || ||||| || |||||||| || |||||||| |
Sbjct 834 CTCTAATCAAGTCGACCCTGACTTT-GTGGAATCAGAAAAGAGACTGGAAAAATGGTT-T 891
Query 971 CCTTA-AATC-CGTCGAAA-ATTATTATTGCGACTGGGTTTATTGCTAGCACTCCGCAAA 1027
|| | || | || | ||| |||||||| || ||||| || || || || || || || |
Sbjct 892 ACTCAGAA-CTCGGC-AAAGATTATTATAGCAACTGGCTTCATAGCCAGTACACCACAGA 949
Query 1028 ATATTCCAACAACTTTGAAAAGAGATGGGAGTGATTTCTCAGCAGCTATTATGGGTGCTT 1087
| |||||||| ||| | || || ||||||||||| ||||| |||||||| |||||||||
Sbjct 950 ACATTCCAACGACTCTCAAGAGGGATGGGAGTGACTTCTCTGCAGCTATAATGGGTGCTC 1009
Query 1088 TATTGAGAGCTCGTCAAGTAACCATTTGGACAGATGTTGATGGTGTATACAGTGCGGATC 1147
| || ||| ||| ||| | || || |||||||||||||||||||| |||||||| ||||
Sbjct 1010 TGTTTAGATCTCACCAACTCACAATCTGGACAGATGTTGATGGTGTGTACAGTGCAGATC 1069
Query 1148 CTCGTAAAGTTAATGAGGCAG-TGATACTCCAGACACTTTCTTATCAAGAGGCCTGGGAA 1206
| | ||||||| ||| || | || |||| |||| |||||||| |||||||| ||||||
Sbjct 1070 CAAGGAAAGTTAGTGAAGCTGTTG-TACTGAAGACTCTTTCTTACCAAGAGGCTTGGGAA 1128
Query 1207 ATGTCTTATTTTGGAGCAAATGTGTTACATCCTCGCACCATCATTCCTGTGATGCGATAT 1266
|||||||| ||||| ||||| || ||||||||||| ||||| ||||| |||||| ||||
Sbjct 1129 ATGTCTTACTTTGGGGCAAACGTTTTACATCCTCGGACCATTATTCCAGTGATGAAATAT 1188
Query 1267 AATATTCCGATTGTGATTAGAAATATTTTCAATCTCTCTGCACCGGGAACAATAATCTGT 1326
| || || ||||| || || ||||||||||| |||||||| || |||||||| || |||
Sbjct 1189 GACATCCCAATTGTAATAAGGAATATTTTCAACCTCTCTGCCCCTGGAACAATGATATGT 1248
Query 1327 CAACCTCCTGAAGATGATTAT-GACCT-TAAACT-GACAACTCCTGTCAAAGGGTTTGCA 1383
| | ||||||||| || || | |||| | ||| |||||||||||||||||||
Sbjct 1249 CGGCAGATTGAAGATGAAGATGGA--TATAAATTAGAC-GCTCCTGTCAAAGGGTTTGCG 1305
Query 1384 ACTATTGACAATTTGGCCCTCATAAATGTTGAAGGTACTGGAATGGCTGGTGTACCCGGT 1443
|| |||||||||||||| || ||||||| ||||| ||||||||||||||||| || |||
Sbjct 1306 ACGATTGACAATTTGGCTCTTGTAAATGTGGAAGGAACTGGAATGGCTGGTGTTCCTGGT 1365
Query 1444 ACTGCAAGTGACATTTTTGGCTG-TGTAAAAGATGTTGGAGCTAATGTGATTATGATATC 1502
||||| |||| ||||||| ||| ||| || || |||||||||||||| |||||||| ||
Sbjct 1366 ACTGCCAGTGCCATTTTT-TCTGCTGTCAAGGAAGTTGGAGCTAATGTTATTATGATCTC 1424
Query 1503 ACAGGCTAGCAGTGAGCATTCTGTGTGCTTTGCTGTGCCTGAGAAGGAAGT-AAACGCAG 1561
||||||||| || ||||||||||||||||||||||| || ||||||||||| ||| || |
Sbjct 1425 ACAGGCTAGTAGCGAGCATTCTGTGTGCTTTGCTGTACCAGAGAAGGAAGTGAAA-GCTG 1483
Query 1562 TCTCTGAGGCATTGCGGTCGA-GATTTAGTGAAGCTTTA-CAAGCGGGACGTCTTTCTCA 1619
| ||||| |||||| || | ||||| || ||||||| | | || || ||||| ||
Sbjct 1484 TTTCTGAAGCATTGAACTC-ACGATTTCGTCAAGCTTTGGCTGGTGGC-CGCCTTTCCCA 1541
Query 1620 GATTGAGGTGATACCAAACTGTAGCATCTTAGCTGCAGTCGGCCAGAAAATGGCTAGTAC 1679
|||||| | || || || |||||||| ||||| ||||| |||||||||||||| || ||
Sbjct 1542 GATTGAAATCATCCCTAATTGTAGCATATTAGCAGCAGTTGGCCAGAAAATGGCGAGCAC 1601
Query 1680 ACCTGGAGTTAGTTGTACACTTTT--CAGTGCTTTGGCGAAGGCTAATATTAATGTCCGA 1737
||||| ||| | | ||||||| || ||| || || ||||| ||||| || ||||
Sbjct 1602 TCCTGGTGTTTCT-GC-CACTTTTTTCAATGCGTTAGCAAAGGCCAATATCAACATCCGT 1659
Query 1738 GCTATATCTCAAGGTTGTTCTGAGTACAATGTTACTGTCGTTATTAAACGTGAAGATAGC 1797
|||||| |||||||||| || |||| |||| |||| || || | || ||||||||| ||
Sbjct 1660 GCTATAGCTCAAGGTTGCTCCGAGTTCAATATTACAGTAGTCGTCAAGCGTGAAGATTGC 1719
Query 1798 GTTAAGGCGTTAAGAGCTGTACACTCGAGGTTTTTC-TTGTCAAGAACAACATTAGCAAT 1856
||| ||| ||||||||||| ||||| || |||| | || || ||||| || || ||| |
Sbjct 1720 ATTAGGGCATTAAGAGCTGTGCACTCAAGATTTTACCTT-TCGAGAACCACTTTGGCAGT 1778
Query 1857 GGGAATCGTAGGACCGGGCTTGATTGGTGCAACATTACTTGACCAGCTGCGGGATCAGGC 1916
|||||| |||||||||| || ||||||| ||| |||||||| ||| | | ||||||||
Sbjct 1779 GGGAATTATAGGACCGGGATTAATTGGTGGAACCTTACTTGATCAGATTAGAGATCAGGC 1838
Query 1917 TGCTGTTCTCAAACAAGAATTTAACATTGATCT-GCGTGTTTT-GGGAATCACTGGTTCA 1974
|| || |||||| |||||| ||| ||||| || ||||||| | |||| |||| || |||
Sbjct 1839 GGCAGTGCTCAAAGAAGAATATAAAATTGA-CTTGCGTGTTATAGGGA-TCACAGGCTCA 1896
Query 1975 AAG-AAGATGTT-ATTGAGTGACATTGGT-ATTGATTTGTCGAGATGGAGAGAACTTCT- 2030
| | || ||||| || |||||| || || ||||| || || ||||||||| ||||| |
Sbjct 1897 A-GTAAAATGTTGAT-GAGTGA-ATCGGGGATTGACTTATCAAGATGGAGAAAACTTATG 1953
Query 2031 AAACGA-GAAGG-GAACAGAGGCGGATTTGGATAAATTCACTCAACAAGTGCATGGAAAT 2088
||| || ||||| ||| | || | | |||| || ||||| ||| | ||| | ||||||
Sbjct 1954 AAA-GAAGAAGGAGAAAA-AG-CTAACATGGAGAAGTTCACCCAATATGTGAAGGGAAAT 2010
Query 2089 CATTTTATCCCCAACTCTGT-AGTGGTTGATTGTACAGCAGACT-CTGCTATTGCAAGCC 2146
||||| || || |||||||| | ||||||||||||| || || | ||| ||| || |||
Sbjct 2011 CATTTCATTCCAAACTCTGTTA-TGGTTGATTGTACGGCCGA-TGCTGATATCGCTAGCT 2068
Query 2147 GTTACTATGATTGGTTACGAA-AGGGAATTCATGTCATTACCCCAAATAAAAAGGCTAAC 2205
||||||| || ||||| | | ||| ||||||||| | || || || |||||||| |||
Sbjct 2069 GTTACTACGACTGGTTGCTACGAGG-AATTCATGTGGTCACTCCGAACAAAAAGGCCAAC 2127
Query 2206 TCAGGTCCCCTCGATCAGTA-CTTGAA-ACTGAGAGATCTTCAAAGGAAATCCTACACTC 2263
|| || || || |||||||| || || | | |||||||||||||| ||||| ||||| |
Sbjct 2128 TCTGGACCACTTGATCAGTATCTA-AAGA-TCAGAGATCTTCAAAGAAAATCGTACACAC 2185
Query 2264 ATTACTTCTACGAAGCCACTGTTGGAGCTGGTCTTCCAATTATCAGCACTTTACGTGGTC 2323
||||||| || ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2186 ATTACTTTTATGAAGCAACCGTTGGAGCTGGTCTTCCAATTATCAGCACCTTACGTGGTC 2245
Query 2324 TCCTTGAGACAGGAGATAAGATACTACGCATAGAGGGCATTTGCAGTGGAACTTTGAGTT 2383
|||| || ||||| ||||| ||||| || || ||||| |||| |||||| ||||| ||||
Sbjct 2246 TCCTCGAAACAGGGGATAAAATACTGCGAATTGAGGGAATTTTCAGTGGTACTTTAAGTT 2305
Query 2384 ATCTATTCAACAATTTTGTTGGAGATC-GAAGTTTCAGCGAGGTTGTCA-CTGAAGCAAA 2441
| || |||||||| ||||| || | | |||| ||||| || ||||| | | ||||||||
Sbjct 2306 ACCTCTTCAACAACTTTGTCGGC-ACCAGAAGCTTCAGTGAAGTTGT-AGCAGAAGCAAA 2363
Query 2442 G-AACGCAGGTTTCACTGAGCCTGATCCAAGAGATGATTTATCTGGAACTGATGTTGCAA 2500
| || ||||||||||| || || |||||| |||||||| |||||||||| |||||||| |
Sbjct 2364 GCAA-GCAGGTTTCACAGAACCAGATCCACGAGATGATCTATCTGGAACAGATGTTGCTA 2422
Query 2501 GGAAGGTGATTATCCTCGCTC-GAGAATCTGGACT-GAAATTGGACCTCGCTGATCTCCC 2558
| || || | ||||| || | ||||||| || || ||||||||| || | | || ||
Sbjct 2423 GAAAAGTAACAATCCTTGC-CAGAGAATCAGG-CTTGAAATTGGATCTTGAGGGCCTTCC 2480
Query 2559 CATT--AGAAGTCTCGTACCAGAA-CCTCTAAAAGGATGCACTTCTGTTGAAGAATTCAT 2615
| | |||| ||| || ||| || |||||| ||| || | || | ||||| || ||
Sbjct 2481 -AGTCCAGAA-TCTTGTGCCA-AAGCCTCTACAAGCTTGTGCATCAGCAGAAGAGTTTAT 2537
Query 2616 GGAGAAACTCCCACAGTACGATGGAGACCTAGCAAAAGAAAG-GCTAGATGCTGAAAACT 2674
|||||| || || |||| |||| ||| || | ||| |||| | ||| |||||| |
Sbjct 2538 GGAGAAGCTACCTCAGTTTGATGAAGAATTATCCAAACAAAGAGA-AGAGGCTGAAG-CG 2595
Query 2675 -CTGGGGAAGTTCT-GAGATATGTTGGAGTGGTGGACGCTGTTA-ACCAAAAGGGAACAG 2731
| || ||||| || |||||| || ||||| || ||||| || | | ||||||||||||
Sbjct 2596 GCAGGAGAAGT-CTTGAGATACGTAGGAGTTGTAGACGCAGT-AGAGAAAAAGGGAACAG 2653
Query 2732 TTGAACTTCGAA--GATACAAGAAAGAACATCCATTTGCGCAGCTCGCAGGTTCAGACAA 2789
| || || ||| | ||||| ||||| ||||| ||||| |||||| | || | || ||
Sbjct 2654 TCGAG-TT-GAAACGGTACAAAAAAGATCATCCGTTTGCTCAGCTCTCGGGCGCTGATAA 2711
Query 2790 CATAATAGCCTTCACAACGACAA-GGTACAAGGATCATCCACTTATAGTCCGAGGACCTG 2848
||| || || |||||||| | || ||||||| ||||| || || || || || |||||||
Sbjct 2712 CATCATCGCTTTCACAACCA-AACGGTACAAAGATCAGCCTCTAATTGTTCGTGGACCTG 2770
Query 2849 GAGCTGGTGCTCAAGTCACGGCCGGTGGTATATTCAGCGACATACTAAGGCTTGCAT-CT 2907
| |||||||||||||| || |||||||| || ||||| ||||| || | ||||||| ||
Sbjct 2771 GTGCTGGTGCTCAAGTTACAGCCGGTGGAATCTTCAGTGACATTCTTCGCCTTGCATTCT 2830
Query 2908 TATCTCGGTGCACCGTCTTAA 2928
||||||| || |||||||||
Sbjct 2831 -ATCTCGGGGCTCCGTCTTAA 2850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119374827830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5