BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19720.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946201 jgi|Araly1|946201|scaffold_702430.1 412 2e-114
Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809 239 4e-62
Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 100 2e-20
> Ahg946201 jgi|Araly1|946201|scaffold_702430.1
Length=441
Score = 412 bits (223), Expect = 2e-114
Identities = 345/400 (86%), Gaps = 23/400 (6%)
Strand=Plus/Plus
Query 492 AATGGCGAGAAGCGATTGAGGACGATGCTGAACGCACCGAAAGAATGCCTTTGCTATTGA 551
|||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||
Sbjct 33 AATGGCGAGAAGCGATTGAGGATGACGCTGAACGTATTGAAAGAATGCCTTTGCTATTGA 92
Query 552 CGGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGAGATTa 611
||||| | |||||||||||| ||||||||||||||||| ||||||
Sbjct 93 CGGCT---G------------CGGTTTACGATTTTGTTTCCTACCCAATTCCAGAGATTG 137
Query 612 aaaaaaaaTTGGATTGGGTTAACCTTATTGCCTATGATTTCTACTCTTCATCCACAAC-C 670
|| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || |
Sbjct 138 AAGAAAACTTGGATTGGGTTAACCTAATTGCCTATGATTTCTACTGTTCATCCAC-ACTC 196
Query 671 ATTGGTCCACCCGCCGCTCTGTTTGATCCCTCAAACCCGAAAGGTCCATGTGGGGACTAT 730
|||| || |||||| |||||||||||||| |||||||||||||||||||| | ||||
Sbjct 197 ATTGTTCTACCCGCGGCTCTGTTTGATCCTTCAAACCCGAAAGGTCCATGCAGAGACTCC 256
Query 731 GGTTTGAAAGAGTGGATTAAGGCCGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCC- 789
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 257 GGTTTGAAAGAGTGGATTAAGGCCGGACTTTCAGCGAAGAAAGCAGTCTTGGGATT-CCT 315
Query 790 ATACGTTGGATGGACCTGGAGTCTAGGAAG-CGGCAATGATGCGGCCACCAGCCGAGTAG 848
|||||||||| ||||||||||| ||| ||| ||| |||||||||||||||| || ||||
Sbjct 316 ATACGTTGGAGGGACCTGGAGTTTAG-AAGGCGGTAATGATGCGGCCACCACCCCAGTA- 373
Query 849 C-TACATCAGCTGAGGGTTCTATCAACTACGATCAGATAA 887
| |||||||||||| |||||||||||||| |||||||||
Sbjct 374 CATACATCAGCTGATGGTTCTATCAACTATAATCAGATAA 413
> Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809
Length=1140
Score = 239 bits (129), Expect = 4e-62
Identities = 722/994 (73%), Gaps = 97/994 (10%)
Strand=Plus/Plus
Query 158 TCAACTCTCTTCACTCATCT-TTTCTGCGCCTTT-GCCGACCTTGACCCTCAGACCAA-C 214
||| |||||||||||||||| ||| |||| |||| || || || || |||| ||||| |
Sbjct 136 TCATCTCTCTTCACTCATCTCTTT-TGCG-CTTTCGCTGATCTCAACTCTCAAACCAATC 193
Query 215 AGCGTCGTTGTCTCCGGCGCTCACGAA-CAAGAATTCTCCAA-C-TT-CACTAAAATCGT 270
| ||| |||| || ||| || || | | |||||| ||| | || ||| ||| | ||
Sbjct 194 A-AGTCACTGTCGCCTCCGCGAACCAACCTA-AATTCT-CAACCTTTACAC-AAACT-GT 248
Query 271 -CAA-GAAGAAAAACCC-TCACGTGCAAACCCTCTTGTCCATCGGCGGAAGAAACGCAGA 327
||| | || |||||| || || ||||||| ||||| |||||||| ||| ||| ||
Sbjct 249 CCAACGCAG--AAACCCTTC-TGTTAAAACCCTTTTGTCTATCGGCGGTGGAATCGCGGA 305
Query 328 TAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTG-GT 386
|||| |||||| ||| ||||||||||| |||||||||||||| ||||| |||| ||| |
Sbjct 306 TAAAACCGCGTATGCTTCTATGGCAAGCAACCCCACTTCTCGAAAATCGTTCA-TTGATT 364
Query 387 CTGCGATCTCCA-GCGCTAGATAC-TATCGATTTGACGGACTTGATCTGGTTTGGAAGTA 444
|| |||| | |||||||| | ||| |||| |||| |||||||| | ||| ||||
Sbjct 365 CTTCGAT-AAGACTCGCTAGAT-CATATGGATTCCACGGTCTTGATCTAGACTGGGAGTA 422
Query 445 -CCCAAAAGATGATG-TGGAGATGAGAAACTT-TGGTCAACTACTT-GAACAATGGCGAG 500
|| | || | | |||||||| ||||| || | ||||||| | | ||||||||
Sbjct 423 TCCGAGCAG-CG-CGACGGAGATGACCAACTTCGGGAC-ACTACTTCG-AGAATGGCGAT 478
Query 501 AAGC-GATTG-AGGACGATGCT-GAACGCA-CCGAAAGAATGCCTTTGCTATTGACGGCT 556
||| | ||| | | ||| ||| | | ||| | | || | || |||||| ||| | |||
Sbjct 479 CAGCTG-TTGTA-GCCGAAGCTAGTA-GCAGCGGTAA-ACCGCGTTTGCTTTTGGCAGCT 534
Query 557 GCGGTTTACTACT-CTCCGGTTTACGATTCTGTTTC-CTACCCAATTC-GGGAGATTaaa 613
||||||| ||||| | | |||| |||| | | | ||||| ||| | ||
Sbjct 535 GCGGTTTTCTACTCCAAC-AATTACTATTC-GGTACTGTACCCGGTTCAATCCG-TTGCT 591
Query 614 aaaaaaTTGGATTGGGTTAACCTTATTGCCTATGATTTCTAC---TC---TTCATCCACA 667
| | ||||||||||||| ||||| || |||||||| ||| | || |||| |
Sbjct 592 AGCAGCCTGGATTGGGTTAATCTTATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGA 651
Query 668 ACCATTGGTCCACCCGCCGCTCTGTTTGATCCCTCAAACCCGAAAGGTCCATGTGGGGAC 727
| |||||||| ||||||||||||||||| ||||| || ||||||| | || |||
Sbjct 652 GTGACCGGTCCACCAGCCGCTCTGTTTGATCCTTCAAA--CG-CAGGTCCAAGCGGAGAC 708
Query 728 TATGGTTTG-AAAG--AGTGGATT-AAGGCCGGACTTCCGGCGAAGAAAGCAGTCTTGGG 783
|| | || | | |||||| || || |||||||||||||||||||||||||||||
Sbjct 709 -GCGG-GAGCAAGGTCA-TGGATTCAA-GCTGGACTTCCGGCGAAGAAAGCAGTCTTGGG 764
Query 784 ATTTCCATACGTT-GGATGGAC-C-TGGAGTCT-AGGAA-GCG----G-CA-A--TGA-T 829
|||||||||| | || | || | ||| |||| | || || | || | | | |
Sbjct 765 ATTTCCATAC-TACGGCT--ACGCGTGGCGTCTCACAAACGCTAACAGTCACAGCT-ACT 820
Query 830 GCG-GCC-ACCAGCCG-AG-TAGCTACATCAGCTGAGGGTTCTATCAACT-ACGATCAGA 884
|| ||| |||| | | || | || | |||| | || ||||| || | | ||| |||||
Sbjct 821 ACGCGCCTACCA-CAGGAGCT-GCGATATCACCGGATGGTTCGAT-AGGTTACGGTCAGA 877
Query 885 TAAA-AAGGTTAATAGTGGATCACAAAGCAAGACCGGTTTTTGACTCGACGGTGGTTGGA 943
||| ||| ||| |||| ||| || ||||| | |||||| | ||||||||||||| |||
Sbjct 878 TAAGGAAGTTTA-TAGTAGATAACGGAGCAACAACGGTTTATAACTCGACGGTGGTCGGA 936
Query 944 GATTACTGCTTT-GCCGGGACGAGTTTGATTGGGTACGATGATCATCAGAGCGTCGTGGC 1002
||||| || || ||||| || | || |||||| || || ||| ||||||| | ||| |
Sbjct 937 GATTATTG-TTACGCCGGCACAACTTGGATTGGTTATGACGATAATCAGAGTATTGTGAC 995
Query 1003 TAAAGTAAAATACGCTAAACAGAAAGGT-TTGCTTGGTTACTTCTCATGGCATGTTGGAG 1061
||||| | ||||||||| |||| |||| || || ||||||||||| ||||||||||| |
Sbjct 996 GAAAGTTAGATACGCTAAGCAGAGAGGTCTT-CTCGGTTACTTCTCGTGGCATGTTGGTG 1054
Query 1062 CTGATGATAATTTTGGCCTATCTCGTGCAGGTTC 1095
|||| ||||||| ||| |||||||||||| |||
Sbjct 1055 CTGACGATAATTCTGGTTTATCTCGTGCAGCTTC 1088
> Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1
Length=1113
Score = 100 bits (54), Expect = 2e-20
Identities = 481/674 (71%), Gaps = 82/674 (12%)
Strand=Plus/Plus
Query 158 TCAACTCTCTTCACTCATCT-TTTCTGCGCCTTT-GCCGACCTTGACCCTCAGACCA-A- 213
||| |||||||||| || || ||| |||| |||| || ||| | |||||| | || |
Sbjct 133 TCATCTCTCTTCACCCACCTATTT-TGCG-CTTTCGCTGACATCAACCCTC-TAACATAT 189
Query 214 CAGCGTCGTTGTCTCCGGC-GCTCACGAA-CAAGAATTCTCCAACTTCACTA-AAATCGT 270
|| ||| |||||||| | | || || | | ||||||||| ||| || | ||| |||
Sbjct 190 CA-AGTCATTGTCTCCTCCAG-GAACAAACCCA-AATTCTCCACCTTTAC-ACAAACCGT 245
Query 271 -CAAGAAGAAAAACCCTCA-CGTGCA-AACCCTCTTGTCCATCGGCGGAAGA-AACGCAG 326
||| || ||||||| | |||| | |||||| ||||| |||||||| || | ||
Sbjct 246 CCAA-CGGAGAAACCCT-ACCGTG-AGAACCCTTTTGTCTATCGGCGG-TGATTTCACAT 301
Query 327 ATAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTGGT 386
|||| | |||||||||||||||||||||||||||||| ||| | |||| |||||| | |
Sbjct 302 ATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-GCT 360
Query 387 -CTGCGATCTCCAGC--GCTAGAT-ACTATCGATTTGACGGACTTGATCTGGT-TTGGAA 441
|| | || | | | ||||||| | ||| |||| |||| || ||||| | ||||||
Sbjct 361 TCTTCTAT-TA-ATCTCGCTAGATCA-TATGGATTCCACGGTCTCGATCTA-TATTGGAA 416
Query 442 GTACCCAAA-AG-ATGATGTGGAGATGAGAA-ACTTT-GGTCAA-CTACTTGAACAATGG 496
|||||| | | | || | ||||| || | ||| || || |||||| || |||||
Sbjct 417 GTACCCGAGCACTACGACA-G-AGATG-GACGA-TTTCGGG-AAGCTACTTCAAGAATGG 471
Query 497 CGA-GAAGCGATTG-AGGACGATGCT-GAACGCACCGAAAGAAT-GCCTTTGCTATTGAC 552
||| | ||| || || | || ||| ||| ||| || | || || |||||| ||||
Sbjct 472 CGATGG-GCGGTTATAGCA-GAGGCTAGAA-GCAGCGGTA-AACCGCGTTTGCTTTTGAT 527
Query 553 GGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGA-GATTa 611
||||||||||| |||||| | || || | ||| | |||| ||| | | ||
Sbjct 528 GGCTGCGGTTTTCTACTC-CTA-TT--CGGTACTG---C--ACCCGGTTCAAGCCG-TTG 577
Query 612 aaaaaaaaTTGGATTGGGTTAACCTTATTGCCTATGATTTCTAC--T-C---TTCATCCA 665
| | |||||||||||||| ||| ||||||||||||| ||| | | ||| || |
Sbjct 578 CCGATAGCTTGGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTCTA 637
Query 666 CA--ACCATTGGTCCACCCGC-CGCTCTGTTTGATCCCTCA-AACCCGAAAGGTCCATG- 720
| | | ||| || ||| || | |||| | ||||| | | |||| | | |||||| |
Sbjct 638 GAGTAAC-TTGCTC-ACCAGCTC-CTCTCTACGATCC-T-ATAACC-GCA-GGTCCAAGC 690
Query 721 TGGGGACTATGGTTTGAAAGAGTGGATT-AAGGCCGGACTTCCGGCGAAGAAAGCAGTCT 779
|| | || || ||| || ||||| | ||| | |||||||||||||||||||||||||
Sbjct 691 TGCG-ACGCCGGAGTGAGAGCGTGGACTCAAG-CTGGACTTCCGGCGAAGAAAGCAGTCT 748
Query 780 TGGGATTTCCATAC 793
||||||||||||||
Sbjct 749 TGGGATTTCCATAC 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5