BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19750.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1 1454 0.0
Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 159 3e-38
> Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1
Length=1116
Score = 1454 bits (787), Expect = 0.0
Identities = 966/1054 (92%), Gaps = 6/1054 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAACTCAGTTTCTCCGAACCAACT-CGATCGTAAAAGCTTCCTACTGGGT 59
||| ||||||| ||| || ||||||||||| || | ||||||||||||||||||||| |
Sbjct 1 ATGACTGATCATACTGAGATTCTCCGAACC-TCTCCCATCGTAAAAGCTTCCTACTGGTT 59
Query 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGGAAACATTGACTCAACTCGCTTCACCCATCT 119
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||
Sbjct 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGTAATCATTGACTCAACTCTCTTCACCCACCT 119
Query 120 TTTCTGCGCCTTCGCTGA-CGTCGACTCTTCCACCCATGAAGTCACTATCTCTGCCGCGA 178
||||||||||||||| || | |||||||||||||| |||||||||||||||| |||||
Sbjct 120 TTTCTGCGCCTTCGCGGATC-TCGACTCTTCCACCTATGAAGTCACTATCTCCCCCGCGT 178
Query 179 ACTCATGCCAAGTCTCCAGCTTTACCCATACCGTTAAAGACAAAAACACGGACGTGCAAA 238
||| |||| || |||||||||||||| | ||||| |||| |||||||| |||||||||
Sbjct 179 ACTTATGCGAATTCTCCAGCTTTACCAAAACCGTCCAAGAGAAAAACACCAACGTGCAAA 238
Query 239 CTCTCTTGTCGATCGGGGGTAAA-GATGCAGACAAAGCTGTGTTAGCGTCCATGGCAAGT 297
|||||||||||||||| |||||| | ||||||| | ||||||| |||||||||||||||
Sbjct 239 CTCTCTTGTCGATCGGCGGTAAATG-CGCAGACACATCTGTGTTTGCGTCCATGGCAAGT 297
Query 298 AACAGCAAAAACCGGAAAGCGTTCATTGATTCCTCGATCGATATCGCTAGGAAGAAGGAT 357
|||| ||| ||||||||||| ||||| ||||| || |||||||||||||||||||||| |
Sbjct 298 AACACCAAGAACCGGAAAGCCTTCATCGATTCTTCCATCGATATCGCTAGGAAGAAGGGT 357
Query 358 TTCTACGGCCTCGACCTAGCTTGGGAGTATCCAAGCAATGACGTGGAGATGGCCAACTTT 417
||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 358 TTCTATGGCCTCGACCTAGCTTGGGAGTATCCGAGCAATGATGTGGAGATGTCCAACTTT 417
Query 418 GGGAAACTCGTGAAAGAATGGCGAGCTGCGGTTGTGGAAGAGTCTGACAGAACTAATCAA 477
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 418 GGGAAACTCCTGAAAGAATGGCGAGAGGCGGTTGTGGAAGAGTCTGACAAAACTAATCAA 477
Query 478 CTGCCTTTGCTCTTGACGGCTGCGGTTTACTACTCCCCGGATTACTATGGTGAGGAGTAC 537
||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 478 CTGCCTTTGCTTTTGACGGCTGCAGTATACTACTCCCCACATTACTATGGTGAGGAGTAC 537
Query 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATTATGGCCTACGATTTTTAT 597
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATAATGGCCTATGATTTTTAT 597
Query 598 GGACCGGGTTGGTCGCCAGTGACCGGGCCACCCGCTGCTCTATTTGATCCTTCCAACCCA 657
|||||||||||||| ||||||||||| || ||||| || |||| ||||||||||||||||
Sbjct 598 GGACCGGGTTGGTCCCCAGTGACCGGACCGCCCGCAGCGCTATATGATCCTTCCAACCCA 657
Query 658 GCAGGTCGAAGTGGCGACTCCGGGTTGAGTAAGTGGCTTGAGGCTAAACTTCCGGCGAAG 717
||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 658 TCAGGTCGAAGTGGCGACTCCGGGTTGAGTCAGTGGCTTCAAGCTAAACTTCCGGCGAAG 717
Query 718 AAAGCAGTGTTAGGATTCTCATACTGTGGTTGGGCTTGGACTCTCGAGGACGCCGAGAAT 777
|| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 718 AAGGCAGTGTTAGGGTTCTCATACTCTGGTTGGGCTTGGACTCTCGAAGACGCCGAGAAT 777
Query 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCATCGGACGGTTCTATAACCTAT 837
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCACCCGACGGTTCTATAACATAT 837
Query 838 GCCAAGATAAGGAACTATATTATCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAAAGATAAGGAACTATATTGTCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897
Query 898 ATCGGATTCTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 898 GTCGGATTCTATTGTTACTTCGGAACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957
Query 958 GTGTCCAAAGTGAGATACGCTAAGCTAAAAGGTTTGCTTGGTTACTTCTCGTGGCATGTT 1017
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 958 GTGTCTAAAGTGAGATACGCTAAGCTAAAAGGCCTACTTGGTTACTTCTCGTGGCATGTT 1017
Query 1018 GGAGCTGACTATAATTGTGGTCTTTCTCGTGCAG 1051
||||||||||||||||| ||||| ||||||||||
Sbjct 1018 GGAGCTGACTATAATTGCGGTCTCTCTCGTGCAG 1051
> Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1
Length=1113
Score = 159 bits (86), Expect = 3e-38
Identities = 135/158 (85%), Gaps = 5/158 (3%)
Strand=Plus/Plus
Query 906 CTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTCC-A 964
||| ||||||| | || || |||||||||||||||||||||||||||||||| | | |
Sbjct 891 CTACTGTTACGCCAAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGT-TACTA 949
Query 965 AAGTGAGATACGCTAAGCTAAA-AGGTTTGCTTGGTTACTTCTCGTGGCATGTTGGAGCT 1023
|||||||||||||||||| | | |||| | |||||||| ||||||||||| ||||||||
Sbjct 950 AAGTGAGATACGCTAAGC-AGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCT 1008
Query 1024 GACTATAATTGTGGTCTTTCTCGTGCAGGTTCG-TTTT 1060
|||||||||| | ||| ||||||||||||||| ||||
Sbjct 1009 GACTATAATTCTCTTCTATCTCGTGCAGGTTCGGTTTT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5