BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19750.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1 1454 0.0 Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 159 3e-38 > Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1 Length=1116 Score = 1454 bits (787), Expect = 0.0 Identities = 966/1054 (92%), Gaps = 6/1054 (1%) Strand=Plus/Plus Query 1 ATGGCTGATCAAACTCAGTTTCTCCGAACCAACT-CGATCGTAAAAGCTTCCTACTGGGT 59 ||| ||||||| ||| || ||||||||||| || | ||||||||||||||||||||| | Sbjct 1 ATGACTGATCATACTGAGATTCTCCGAACC-TCTCCCATCGTAAAAGCTTCCTACTGGTT 59 Query 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGGAAACATTGACTCAACTCGCTTCACCCATCT 119 ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| || Sbjct 60 TGTGAAGCCGGAAAACGACTTCCCTGCCGTAATCATTGACTCAACTCTCTTCACCCACCT 119 Query 120 TTTCTGCGCCTTCGCTGA-CGTCGACTCTTCCACCCATGAAGTCACTATCTCTGCCGCGA 178 ||||||||||||||| || | |||||||||||||| |||||||||||||||| ||||| Sbjct 120 TTTCTGCGCCTTCGCGGATC-TCGACTCTTCCACCTATGAAGTCACTATCTCCCCCGCGT 178 Query 179 ACTCATGCCAAGTCTCCAGCTTTACCCATACCGTTAAAGACAAAAACACGGACGTGCAAA 238 ||| |||| || |||||||||||||| | ||||| |||| |||||||| ||||||||| Sbjct 179 ACTTATGCGAATTCTCCAGCTTTACCAAAACCGTCCAAGAGAAAAACACCAACGTGCAAA 238 Query 239 CTCTCTTGTCGATCGGGGGTAAA-GATGCAGACAAAGCTGTGTTAGCGTCCATGGCAAGT 297 |||||||||||||||| |||||| | ||||||| | ||||||| ||||||||||||||| Sbjct 239 CTCTCTTGTCGATCGGCGGTAAATG-CGCAGACACATCTGTGTTTGCGTCCATGGCAAGT 297 Query 298 AACAGCAAAAACCGGAAAGCGTTCATTGATTCCTCGATCGATATCGCTAGGAAGAAGGAT 357 |||| ||| ||||||||||| ||||| ||||| || |||||||||||||||||||||| | Sbjct 298 AACACCAAGAACCGGAAAGCCTTCATCGATTCTTCCATCGATATCGCTAGGAAGAAGGGT 357 Query 358 TTCTACGGCCTCGACCTAGCTTGGGAGTATCCAAGCAATGACGTGGAGATGGCCAACTTT 417 ||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct 358 TTCTATGGCCTCGACCTAGCTTGGGAGTATCCGAGCAATGATGTGGAGATGTCCAACTTT 417 Query 418 GGGAAACTCGTGAAAGAATGGCGAGCTGCGGTTGTGGAAGAGTCTGACAGAACTAATCAA 477 ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 418 GGGAAACTCCTGAAAGAATGGCGAGAGGCGGTTGTGGAAGAGTCTGACAAAACTAATCAA 477 Query 478 CTGCCTTTGCTCTTGACGGCTGCGGTTTACTACTCCCCGGATTACTATGGTGAGGAGTAC 537 ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 478 CTGCCTTTGCTTTTGACGGCTGCAGTATACTACTCCCCACATTACTATGGTGAGGAGTAC 537 Query 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATTATGGCCTACGATTTTTAT 597 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 538 CCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATAATGGCCTATGATTTTTAT 597 Query 598 GGACCGGGTTGGTCGCCAGTGACCGGGCCACCCGCTGCTCTATTTGATCCTTCCAACCCA 657 |||||||||||||| ||||||||||| || ||||| || |||| |||||||||||||||| Sbjct 598 GGACCGGGTTGGTCCCCAGTGACCGGACCGCCCGCAGCGCTATATGATCCTTCCAACCCA 657 Query 658 GCAGGTCGAAGTGGCGACTCCGGGTTGAGTAAGTGGCTTGAGGCTAAACTTCCGGCGAAG 717 ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| Sbjct 658 TCAGGTCGAAGTGGCGACTCCGGGTTGAGTCAGTGGCTTCAAGCTAAACTTCCGGCGAAG 717 Query 718 AAAGCAGTGTTAGGATTCTCATACTGTGGTTGGGCTTGGACTCTCGAGGACGCCGAGAAT 777 || ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 718 AAGGCAGTGTTAGGGTTCTCATACTCTGGTTGGGCTTGGACTCTCGAAGACGCCGAGAAT 777 Query 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCATCGGACGGTTCTATAACCTAT 837 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 778 AACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCACCCGACGGTTCTATAACATAT 837 Query 838 GCCAAGATAAGGAACTATATTATCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897 | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 838 GAAAAGATAAGGAACTATATTGTCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTG 897 Query 898 ATCGGATTCTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 898 GTCGGATTCTATTGTTACTTCGGAACCACGTGGATTGGTTACGATGATAATCAGAGTATT 957 Query 958 GTGTCCAAAGTGAGATACGCTAAGCTAAAAGGTTTGCTTGGTTACTTCTCGTGGCATGTT 1017 ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 958 GTGTCTAAAGTGAGATACGCTAAGCTAAAAGGCCTACTTGGTTACTTCTCGTGGCATGTT 1017 Query 1018 GGAGCTGACTATAATTGTGGTCTTTCTCGTGCAG 1051 ||||||||||||||||| ||||| |||||||||| Sbjct 1018 GGAGCTGACTATAATTGCGGTCTCTCTCGTGCAG 1051 > Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 Length=1113 Score = 159 bits (86), Expect = 3e-38 Identities = 135/158 (85%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 906 CTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTCC-A 964 ||| ||||||| | || || |||||||||||||||||||||||||||||||| | | | Sbjct 891 CTACTGTTACGCCAAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGT-TACTA 949 Query 965 AAGTGAGATACGCTAAGCTAAA-AGGTTTGCTTGGTTACTTCTCGTGGCATGTTGGAGCT 1023 |||||||||||||||||| | | |||| | |||||||| ||||||||||| |||||||| Sbjct 950 AAGTGAGATACGCTAAGC-AGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCT 1008 Query 1024 GACTATAATTGTGGTCTTTCTCGTGCAGGTTCG-TTTT 1060 |||||||||| | ||| ||||||||||||||| |||| Sbjct 1009 GACTATAATTCTCTTCTATCTCGTGCAGGTTCGGTTTT 1046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5