BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19810.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809 1762 0.0
Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1 363 3e-99
Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 150 2e-35
> Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809
Length=1140
Score = 1762 bits (954), Expect = 0.0
Identities = 1082/1144 (95%), Gaps = 8/1144 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCAACAAAACTCATATCGCTCATTGTCTCCATAACATTCTTCCTCACTCTCCAA 60
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ATGTCTACAACAAAACTCATCTCGCTCATTGTCTCCATAACATTCTTCCTCTCTCTCCCA 60
Query 61 TGCT-CAATGGCACAAACTGTCGTAAAAGCTTCGTACTGGTTCCCGGCGAGTGAATTTCC 119
| || | || |||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 61 TCCTCCTAT-GCACAAACCGTCGTAAAAGCATCGTATTGGTTCCCTGCGAGTGAATTTCC 119
Query 120 GGTTACCGACATTGACTCATCTCTCTTCACTCACCTTTTTTGTGCTTTCGCTGATCTCAA 179
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 120 GGTTACCGACATTGACTCATCTCTCTTCACTCATCTCTTTTGCGCTTTCGCTGATCTCAA 179
Query 180 CTCTCAAACCAATCAAGTCACTGTCTCCTCCGCAAACCAACCTAAATTCTCAACCTTTAC 239
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 180 CTCTCAAACCAATCAAGTCACTGTCGCCTCCGCGAACCAACCTAAATTCTCAACCTTTAC 239
Query 240 ACAAACTGTCCAACGCAGAAACCCTTCTGTTAAAACCCTCTTGTCCATCGGCGGTGGAAT 299
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 240 ACAAACTGTCCAACGCAGAAACCCTTCTGTTAAAACCCTTTTGTCTATCGGCGGTGGAAT 299
Query 300 AGCAGATAAAACCGCGTATGCTTCTATGGCAAGTAACCCCACTTCTCGAAAATCATTCAT 359
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 300 CGCGGATAAAACCGCGTATGCTTCTATGGCAAGCAACCCCACTTCTCGAAAATCGTTCAT 359
Query 360 TGATTCTTCGATAAGAGTGGCTAGATCCTATGGATTCCACGGTCTTGATCTAGACTGGGA 419
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TGATTCTTCGATAAGACTCGCTAGATCATATGGATTCCACGGTCTTGATCTAGACTGGGA 419
Query 420 GTATCCGAGCAGTGCGACGGAGATGACCAACTTCGGAACGCTACTTCGAGAATGGCGATC 479
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 GTATCCGAGCAGCGCGACGGAGATGACCAACTTCGGGACACTACTTCGAGAATGGCGATC 479
Query 480 AGCGGTTGTAGCAGAAGCTAGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCGGCTGCGGT 539
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AGCTGTTGTAGCCGAAGCTAGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCAGCTGCGGT 539
Query 540 TTTCTACTCCAACAATTACTATTCGGTACTGTACCCGGTTTC-AGCCGTTGCTAGCAGCT 598
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 540 TTTCTACTCCAACAATTACTATTCGGTACTGTACCCGG-TTCAATCCGTTGCTAGCAGCC 598
Query 599 TGGATTGGGTTAATCTTATGGCCTATGATTTTTACGGACCGGGTTGGTCCAGAGTGACCG 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGATTGGGTTAATCTTATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGAGTGACCG 658
Query 659 GTCCACCAGCCGCTCTGTTTGATCCTTCAAACGCAGGTCCAAGCGGAGACGCTGGAACAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 659 GTCCACCAGCCGCTCTGTTTGATCCTTCAAACGCAGGTCCAAGCGGAGACGCGGGAGCAA 718
Query 719 GGTCATGGATTCAAGCTGGACTCCCAGCGAAGAAAGCTGTCTTGGGATTTCCATACTACG 778
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 719 GGTCATGGATTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATACTACG 778
Query 779 GGTACGCGTGGCGTCTCACAAACGCCAACAGTCATAGCTACTACGCGCCTACCACTGGAG 838
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 779 GCTACGCGTGGCGTCTCACAAACGCTAACAGTCACAGCTACTACGCGCCTACCACAGGAG 838
Query 839 CGGCGATATCACCAGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTTATAGTAGATA 898
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTGCGATATCACCGGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTTATAGTAGATA 898
Query 899 ACGGAGCAACAACGGTTTATAACTCCACAGTGGTCGGAGATTATTGTTATGCCGGCACGA 958
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 899 ACGGAGCAACAACGGTTTATAACTCGACGGTGGTCGGAGATTATTGTTACGCCGGCAC-A 957
Query 959 A-TTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAG 1017
| |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 958 ACTTGGATTGGTTATGACGATAATCAGAGTATTGTGACGAAAGTTAGATACGCTAAGCAG 1017
Query 1018 AGAGGT-TTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATC 1076
|||||| || || |||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1018 AGAGGTCTT-CTCGGTTACTTCTCGTGGCATGTTGGTGCTGACGATAATTCTGGTTTATC 1076
Query 1077 TCGTGCAGCTTCACAGGCATGGGATGCTACGACGGCAACCACCAGAACTATACAGAAGGT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGTGCAGCTTCACAGGCATGGGATGCTACGACGGCAACCACCAGAACTATACAGAAGGT 1136
Query 1137 TTAA 1140
||||
Sbjct 1137 TTAA 1140
> Ahg492890 jgi|Araly1|492890|fgenesh2_kg.7__2323__AT4G19760.1
Length=1116
Score = 363 bits (196), Expect = 3e-99
Identities = 756/1015 (74%), Gaps = 83/1015 (8%)
Strand=Plus/Plus
Query 129 CATTGACTCATCTCTCTTCACTCACCTTTTTTGTGCTTTCGCTGATCTCAACTC-TCAAA 187
|||||||||| |||||||||| |||||||| || || ||||| |||||| |||| || |
Sbjct 93 CATTGACTCAACTCTCTTCACCCACCTTTTCTGCGCCTTCGCGGATCTCGACTCTTC-CA 151
Query 188 CCAATCAAGTCACTGTCTCCTCCGCAAAC-CAACCTAAATTCTCAACCTTTA-CACAAAC 245
|| || |||||||| ||||| |||| || | | ||||||| | ||||| || ||||
Sbjct 152 CCTATGAAGTCACTATCTCCCCCGCGTACTTATGC-GAATTCTCCAGCTTTACCA-AAAC 209
Query 246 TGTCCAACGCAG--AAAC-CCTTCTGTTAAAACCCTCTTGTCCATCGGCGGTGGAAT-AG 301
|||||| | || |||| || | || |||| |||||||| ||||||||| ||| |
Sbjct 210 CGTCCAA-G-AGAAAAACACCAAC-GTGCAAACTCTCTTGTCGATCGGCGGT-AAATGCG 265
Query 302 CAGATAAAACCGCGTATGCTTCTATGGCAAGTAAC-CCCACTTCTCGAAAATCATTCATT 360
|||| | | | | || ||| || |||||||||||| || | | || ||| | |||||
Sbjct 266 CAGACACATCTGTGTTTGCGTCCATGGCAAGTAACACCAAGAAC-CGGAAAGCCTTCATC 324
Query 361 GATTCTTCGATAAGA-GTGGCTA-GATCCTATGGATTCCACGGTCTTGATCTAGAC-TGG 417
|||||||| || || | |||| || | || ||| | || || || |||| | |||
Sbjct 325 GATTCTTCCAT-CGATATCGCTAGGA-AGAAGGGTTTCTATGGCCTCGACCTAG-CTTGG 381
Query 418 GAGTATCCGAGCAGTG-CGACGGAGATGACCAAC-TTCGGAACGCTACTTCGAGAATGGC 475
||||||||||||| || | ||||||| ||||| || |||| || || ||||||||
Sbjct 382 GAGTATCCGAGCAATGATG-TGGAGATGTCCAACTTTGGGAA-ACTCCTGAAAGAATGGC 439
Query 476 GATCA-GCGGTTGTAGCAGAAG-CTAGTAGC--AGC-GGTAAACCGCGTTTGCTTTTGGC 530
|| | |||||||| | || || || | | | | | | ||| || |||||||||| |
Sbjct 440 GA-GAGGCGGTTGTGGAAG-AGTCT-G-A-CAAAACTAATCAACTGCCTTTGCTTTTGAC 494
Query 531 GGCTGCGGTTTTCTACT-CCAACAATTACTATTCGGT-A-CTGTACCCGGTTTC-AGCCG 586
|||||| || | ||||| || || ||||||| | ||| | |||||||| ||| ||||
Sbjct 495 GGCTGCAGTATACTACTCCCCAC-ATTACTA-T-GGTGAGGAGTACCCGG-TTCAAGCCA 550
Query 587 TTG-CTAGCAGCTTGGATTGGGTTAATC-TTATGGCCTATGATTTTTACGGACCGGGTTG 644
||| | | || ||||||| ||||| | | ||||||||||||||||| |||||||||||
Sbjct 551 TTGCCGA-CAATTTGGATTTTGTTAA-CATAATGGCCTATGATTTTTATGGACCGGGTTG 608
Query 645 GTCCAGAGTGACCGGTCCACCAGCCGCTCTGTTTGATCCTT-CAA-AC-GCAGGTCCAAG 701
|||| ||||||||| || || || || || | |||||||| ||| | |||||| |||
Sbjct 609 GTCCCCAGTGACCGGACCGCCCGCAGCGCTATATGATCCTTCCAACCCATCAGGTCGAAG 668
Query 702 CGGAGACGCTGGAACAAGGTCA-TGGATTCAAGCTGGACTCCCAGCGAAGAAAGCTGTCT 760
|| ||| | || | |||| ||| |||||||| ||| || |||||||| || || |
Sbjct 669 TGGCGACTCCGGGTTGA-GTCAGTGGCTTCAAGCTAAACTTCCGGCGAAGAAGGCAGTGT 727
Query 761 T-GGGATTTC-CATACTAC-GGGTACGCGTGG-CGTCTCACAA-ACGCCAACAGTCATAG 815
| ||| ||| |||||| | || | || ||| | |||| || ||||| | | | | |
Sbjct 728 TAGGG--TTCTCATACT-CTGGTTGGGCTTGGAC-TCTC-GAAGACGCCGAGAATAACGG 782
Query 816 CTACT-ACGC-GCCTACC-ACTGGAGCGGCGATATCACCAGATGGTTCGATAGGTTACGG 872
||| | | || ||| ||| | |||||| ||||||||||| || ||||| ||| || |
Sbjct 783 CTA-TGATGCAGCC-ACCGA-TGGAGCAGCGATATCACCCGACGGTTCTATAACATATGA 839
Query 873 TCAGATAAGGAAGTTTATAGTAGATAACGGAGCAACAACGGTT-TATAACTCC-ACAGTG 930
|||||||||| | ||| || |||||||||||| | || || || | ||| | |||
Sbjct 840 AAAGATAAGGAACTATATTGTCGATAACGGAGCAGCCAC-ATTCCATGA-TCCGGCGGTG 897
Query 931 GTCGGAGAT-TATTGTTA-TGCCGGCACGAATTGGATTGGTTACGATGATAATCAGAGTA 988
|||||| | |||||||| | ||| || | ||||||||||||||||||||||||||||
Sbjct 898 GTCGGA-TTCTATTGTTACT-TCGGAACCACGTGGATTGGTTACGATGATAATCAGAGTA 955
Query 989 TTGTGACGAAAGTTAGATATGCCAAGC-AGAGAGGTTTGCTTGGTTACTTCTCGTGGCAT 1047
||||| | ||||| ||||| || |||| | | ||| | |||||||||||||||||||||
Sbjct 956 TTGTGTCTAAAGTGAGATACGCTAAGCTAAA-AGGCCTACTTGGTTACTTCTCGTGGCAT 1014
Query 1048 GTCGGTGCTGACGATAATT-CTGGTCTATCTCGTGCAGCTTCAC-AGGCATGGGA 1100
|| || |||||| |||||| | ||||| ||||||||||| ||| || |||||||
Sbjct 1015 GTTGGAGCTGACTATAATTGC-GGTCTCTCTCGTGCAGCATCAATAG-CATGGGA 1067
> Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1
Length=1113
Score = 150 bits (81), Expect = 2e-35
Identities = 113/129 (88%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 960 TTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAGAG 1019
||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||
Sbjct 912 TTGGATTGGTTACGATGATAATCAGAGTATTGTTACTAAAGTGAGATACGCTAAGCAGAG 971
Query 1020 AGGTTTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATCTCG 1079
|||| | |||||||| ||||||||||| | || |||||| |||||||| |||||||||
Sbjct 972 AGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCTTCTATCTCG 1031
Query 1080 TGCAGCTTC 1088
||||| |||
Sbjct 1032 TGCAGGTTC 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5