BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19830.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492887 jgi|Araly1|492887|fgenesh2_kg.7__2320__AT4G19830.1 1210 0.0
> Ahg492887 jgi|Araly1|492887|fgenesh2_kg.7__2320__AT4G19830.1
Length=855
Score = 1210 bits (655), Expect = 0.0
Identities = 796/861 (92%), Gaps = 22/861 (3%)
Strand=Plus/Plus
Query 88 aaaaTGATTCGGTGCTTCGCGTGGACACCACTAGTAGGTGCTCCCTTAATCACCACCGTC 147
||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||
Sbjct 1 AAAATGATTCGGTGCTTCGCGAGGACACCACTAATAGGTGCTCCCTTCATCTCCACCGTC 60
Query 148 CATTTCACATCTCCGCCATCTCTCAGAATCTTCGCATCTCGTTCTTCC-GCA-C--catc 203
|||||||||||||| ||| || ||||||| |||||||||||||| ||| || | ||||
Sbjct 61 CATTTCACATCTCCACCAACTATCAGAATTTTCGCATCTCGTTC-TCCATCATCATCATC 119
Query 204 atcatcatcatcatcatcatcGACAGTTGCAGCAGCATCTAGAAGATCAATATCTCTGTC 263
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 ATCATCATCATCATCATCATCGACAGTT---GCAGCATCTAGAAGATCAATATCTCTGTC 176
Query 264 AATTATCGCCGTCACGTCTTCCGTCGTCTCCTCCTTTTGC-TTCTCGTCTCCGGCACTAG 322
|||||||||||||||||||||||||||||| ||| ||| | ||| | |||||||||||||
Sbjct 177 AATTATCGCCGTCACGTCTTCCGTCGTCTCTTCCGTTT-CATTCACTTCTCCGGCACTAG 235
Query 323 CCGACTTCTCTGAAATCCCTAATTCCGGCGGCGTTAAAGCTCTCGACCTCCGAATCGGCG 382
| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 236 CTGAATTCTCTGAAATCCCTAATTCCGGCGGAGTTAAAGCTCTCGACCTCCGAACCGGCG 295
Query 383 ATGGTGACGTTCCCATTGAAGGAGATCAGATTGAAATACATTACTATGGGAGATTAGCTG 442
| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 ACGGTGAAGTCCCCATTGAAGGAGATCAGATTGAAATACATTACTATGGGAGATTGGCTG 355
Query 443 CGAAGCAAGGATGGAGATTTGATTCAACATATGATCATAAAGATAGTAATGGTGAAGCTG 502
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 356 CGAAGCAAGGATGGAGATTTGATTCAACATATGACCATAAAGATAGTAATGGTGAAGCTG 415
Query 503 TTCCTTTCACATTCGTCCTTGGTTCTAGCAAAGTAATTCCGGGGATTGAAACAGCTGTGA 562
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 416 TTCCTTTCACATTCGTCCTTGGTTCTAGCAAAGTAATTCCGGGGATCGAAACAGCTGTTA 475
Query 563 GGTCTATGAAAGTAGGCGGGATTCGTCGGGTGGTTATACCTCCATCTCAGGGATACCAGA 622
|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 476 GGTCGATGAAAGTAGGCGGGATTCGTCGGGTGATTATACCTCCATCTCAAGGATACCAGA 535
Query 623 ATACATCACAGGAGCCTCTCCCACCAAACTTCTTTGACAGACAGAGACTCTTCACGACTA 682
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATACATCACAAGAGCCTCTCCCACCAAACTTCTTTGACAGACAGAGACTCTTCACGACTA 595
Query 683 TATTTAACCCAACACGTCTCGCCAATGGAGAAGGTTCTACTCTTGGAACTCTCGTTTTTG 742
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCTTTAACCCTACACGTCTAGCCAATGGAGAAGGTTCTACTCTTGGAACTCTCGTTTTTG 655
Query 743 ACATTGAACTTGTCAGCACCAGACGCCTTCACCGATGAGTCATATTGTCCTAGTACTTTT 802
|||| |||||||||||||||||| ||||||||| || |||||||||||||| ||||||||
Sbjct 656 ACATCGAACTTGTCAGCACCAGAAGCCTTCACCAATAAGTCATATTGTCCTCGTACTTTT 715
Query 803 GGATAAGTGAATAGAAATTTCAACTTTAGATGTAAATGAAGTTGATTATTTGTCACTTC- 861
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 GGATAAGTGAATAGAAATTTCAACTTTAGATGTAAATGAAGTTGATCATTTGTCACTTGG 775
Query 862 TCT------CCCTGCTTT-GCATTCGTATTACATTTGT-GTGTATAAATAA-AA-GGTTG 911
||| ||||| ||| |||||| ||||||||| || ||||| ||| || || |||||
Sbjct 776 TCTGTTGGTCCCTGTTTTCGCATTCATATTACATT-GTTGTGTAGAAAAAATAATGGTTG 834
Query 912 CTAAATAATAGACAACGAAAC 932
||||||||||||||||||||
Sbjct 835 ATAAATAATAGACAACGAAAC 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5