BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19840.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492886 jgi|Araly1|492886|fgenesh2_kg.7__2319__AT4G19840.1 1448 0.0
> Ahg492886 jgi|Araly1|492886|fgenesh2_kg.7__2319__AT4G19840.1
Length=967
Score = 1448 bits (784), Expect = 0.0
Identities = 911/972 (94%), Gaps = 9/972 (1%)
Strand=Plus/Plus
Query 1 GTCAAGTTGAATGTACTGATC-AAGATAACAAATTTATCAAAAATAAATACATCATACTG 59
|||||||||||| |||||||| || |||||||||||||||||||||| ||||||||| ||
Sbjct 1 GTCAAGTTGAATATACTGATCTAA-ATAACAAATTTATCAAAAATAAGTACATCATATTG 59
Query 60 GTTTATGAGCAAGAAACATTGCTCAGAATTATTACCAAATAAGATGTTTAGAAACCAAGA 119
||||| | ||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||
Sbjct 60 GTTTACGGGCAAGAAACATTGCTCAGAGTTATTACCAAAGAAGATGTTTGGCAACCAGGA 119
Query 120 CTCGAAATACTTGATCCCGGTGCAGAAAGAAGCGCCACCGGTGACAACTTTACCGATGAA 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 ATCGAAATACTTGATCCCGGTGCAGAAAGAAGCGTCACCGGTGACAACTTTACCGATGAA 179
Query 180 AGCTTCAACGGTGAAATCTCCACACAACTGTGAGGCCATTCTCAGAGACGCAGATCCTCC 239
||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AGCATCACCGGTGAAATCTCCACATAACTGTGAGGCCATTCTCAGAGACGCAGATCCTCC 239
Query 240 GAtctctctctcctctgttaatctctctGAACAGCTACGGTCTGGTGTTTTCTTGAAACC 299
|| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GA--TCTCTGT-CTCTGTTAATCTCTCTGAACAGCTACGGTCTGGTGTTTTCTTGAAGCC 296
Query 300 CAAGAAACAGATCAAATATTGGGTGGACGAGAGAAACAGCAACTGCTTCATGCTCTTTGC 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACGAAACAGATCAAATATTGGGTGGACGAGAGAAACAGCAACTGCTTCATGCTCTTTGC 356
Query 360 AAAGAACCTCTCTATAACTTGGTCTGATGACGTCAACTATTGGACTTGGTTTACCGAAAA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 357 AAAGAACCTCTCTATCACTTGGTCTGATGACGTCAACTATTGGACTTGGTTTAACGACAA 416
Query 420 AGAGTCACCAAACGAGAATGTGGAAGCTGTGGGATTGAAAAACGTTTGTTGGCTCGACAT 479
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 AGAGTCACCAAACGAGACTGTGGAGGCTGTGGGATTGAAAAACGTTTGTTGGCTCGACAT 476
Query 480 CACGGGAAAATTCGACACGAGGAACCTCACTCCGGGGATTGTTTACGAGGTAGTCTTTAA 539
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 477 CACGGGAAAATTTGACACGAGGAACCTCACTCCGGGGATTGCTTACGAGGTGGTCTTTAA 536
Query 540 GGTGAAGCTAGAGGATCCGGCCTATGGATGGGACACGCCGGTGAACCTAAAGCTAGTCTT 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 537 GGTGAAGCTAGAGGATCCGGCCTATGGATGGGACACGCCGGTGAACGTAAAGCTAGTATT 596
Query 600 GCCTAACGGTAAGGAGA-AACCACAAGAGAAAAAGGTGAGTTTGAGGGAACTTCCAAGGT 658
||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||||||
Sbjct 597 GCCTAACGGTAAGGA-ACAACCGCAGGAGCACAAGGTGAGTTTGAGGGAACTTCCAAGGT 655
Query 659 ATAAATGGGTCGATGTCAGAGTTGGCGAGTTCGTACCTGAGAAATCCGCTGCCGGAGAGA 718
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 656 ATAAATGGGTCGATGTCAGAGTCGGCGAGTTCGTACCGGAGAAATCTGCTGCCGGAGAGA 715
Query 719 TCACTTTCTCAATGTATGAGCATGCGGCTGGTGTTTGGAAGAAAGGGCTCTCCCTCAAAG 778
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 716 TCACTTTCTCAATGTATGAGCATGAGGCTGGCGTTTGGAAGAAAGGGCTCTCCCTCAAAG 775
Query 779 GTGTTGCAATTCGTCCCAAACAGTAATAATTGTTATGGCATAGAAAAACATA-AA-TCTC 836
|||||||||||||||||||||||||||||| ||||||||| ||||||||| || | ||
Sbjct 776 GTGTTGCAATTCGTCCCAAACAGTAATAATCAATATGGCATATAAAAACATATAAATATC 835
Query 837 CATATGCACCAATGGACCTTCTCAACATATATTTCACATCATGTCATGTGTGTATAATAA 896
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 836 CATATGCACCAATGGACCTTCTCTACATGTGTTTCACATCATGTCATGTGTGTATAATAA 895
Query 897 GGTTGTTCTATCGTATTTTTAGTTTTAATAATAACTTTAATGTTGGTGTTGAATAAACTC 956
||||| ||||||||||| ||||||| ||||| |||||| |||||||||||||||||| |
Sbjct 896 GGTTGATCTATCGTATTATTAGTTTAAATAACAACTTTGATGTTGGTGTTGAATAAATTT 955
Query 957 AAAACGAGTGTT 968
||||||||||||
Sbjct 956 AAAACGAGTGTT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5