BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19850.2

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492885 jgi|Araly1|492885|fgenesh2_kg.7__2318__AT4G19850.1         534    2e-151
  Ahg492884 jgi|Araly1|492884|fgenesh2_kg.7__2317__AT4G19860.1         102    3e-21 


> Ahg492885 jgi|Araly1|492885|fgenesh2_kg.7__2318__AT4G19850.1
Length=483

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 373/412 (91%), Gaps = 11/412 (3%)
 Strand=Plus/Plus

Query  167  ATGAGGGTAAAGCGAAGAAAAACTGTTTCATGTTGTACGCGAGAGATCTCTCAATTACAT  226
            ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct  1    ATGAGTGTAAAGCGAAGAAAAACTGTTTCATGTTGAACGCGAGAGAACTCTCAATTACAT  60

Query  227  GGGCAGAGTCTCAAACAAATAAATATTGGAGTTGGTTCTCTGATCTTGACCAAACATCAA  286
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   GGGCAGAGTCTCAGACAAATAAATATTGGAGTTGGTTCTCTGATCTTGACCAAACATCCA  120

Query  287  GTGATGTAAGAACTGAGGTTGCAAAGATGGAACGAGTAGCTTGGTTAGAAGTTGTCGGAA  346
            | | | |      | | |||    | |||||||||||||||||||||||||| || ||||
Sbjct  121  G-G-T-T-----TTTA-GTT--TTATATGGAACGAGTAGCTTGGTTAGAAGTGGTTGGAA  169

Query  347  AATTCGAGACGGAGAAACTAACTCCCAACAGTTTGTACGAGGTTGTGTTTGTGGTCAAGC  406
            | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  170  ACTTCGAAACGGAGAAACTAACTCCCAACAGTTTGTACGAGGTTGTGTTTGTGGTTAAGC  229

Query  407  TAATCGATTCTGCTAAAGGATGGGATTTTCGGGTTAACTTCAAATTGGTTTTGCCAACCG  466
            |||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  230  TAATAGATTCTGCGAAAGGATGGGATTTTCGGGTTAACTTTAAACTGGTTTTGCCAACCG  289

Query  467  GAGAAACCAAAGAGCGGCGAGAGAATGTGAACCTGTTAGAAAGGAACAAGTGGGTGGAGA  526
            ||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct  290  GAGAAACCAGAGAGCGGCGAGAGCATGTGAATCTGTTAGAAAGGAACCAGTGGGTGGAGA  349

Query  527  TTCCGGCCGGTGAGTTCATGATATCACCAGAACATCTCTCTGGCAAGATTGA  578
            |||||||||||||||||| || ||| ||||||||||| || |||||||||||
Sbjct  350  TTCCGGCCGGTGAGTTCAGGACATCGCCAGAACATCTTTCCGGCAAGATTGA  401


> Ahg492884 jgi|Araly1|492884|fgenesh2_kg.7__2317__AT4G19860.1
Length=1915

 Score =  102 bits (55),  Expect = 3e-21
 Identities = 67/72 (93%), Gaps = 4/72 (6%)
 Strand=Plus/Minus

Query  587   AATCCAAACTTGTAAGCTTAAACAATAATAAGAACACGAAATTTATTAT---GATG-ATG  642
             ||||| |||||||||||||||||||||||||||||||||||||||||||   |||| |||
Sbjct  1915  AATCCTAACTTGTAAGCTTAAACAATAATAAGAACACGAAATTTATTATTATGATGGATG  1856

Query  643   ATTTATGTACAC  654
             ||||||||||||
Sbjct  1855  ATTTATGTACAC  1844



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24322421046


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5