BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19860.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492884 jgi|Araly1|492884|fgenesh2_kg.7__2317__AT4G19860.1 2865 0.0
> Ahg492884 jgi|Araly1|492884|fgenesh2_kg.7__2317__AT4G19860.1
Length=1915
Score = 2865 bits (1551), Expect = 0.0
Identities = 1811/1930 (94%), Gaps = 43/1930 (2%)
Strand=Plus/Plus
Query 32 TATGACAATTATTTTT-CTGCCACCTTGACTTGTACGGCTTATATT-CCAAAAATTTCTT 89
|||||||||||||||| || |||||||||||||||||||||||||| || ||||||| ||
Sbjct 20 TATGACAATTATTTTTCCT-CCACCTTGACTTGTACGGCTTATATTACC-AAAATTTGTT 77
Query 90 TTATTGTTCACCTCTTTTTCTTCAATCCTTCAATTTCTCTCACCAACCCTAATTTCCCCA 149
||||| |||| || || || | |||||| || |||| ||||||||||||||||||
Sbjct 78 TTATTTTTCA--TC-CCTT-TT---T-CTTCAA-TT-TCTCGCCAACCCTAATTTCCCCA 127
Query 150 AATTTGGTAATACGAT-T-T-CGTCAATTTACTTCGCAATCGATTCAATTCAATTATGTC 206
|||||||| | || || | | | | || ||||||||||||||||||||||||| ||||||
Sbjct 128 AATTTGGT-A-AC-ATCTCTCCTTGAAATTACTTCGCAATCGATTCAATTCAACTATGTC 184
Query 207 TCTATTACTGGAAGAGATCATTAGATCAGTAGAGGCTTTGCTGAAGCTCAGAAATCGGAA 266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 185 TCTATTACTGGAAGAGATCATTCGATCAGTAGAGGCTTTGCTGAAGCTCAGAAATCGGAA 244
Query 267 TCAGGAACCCTATGTTGACCCGAATCTAAACCCGGTTCTTCTAGTTCCAGGAATCGCTGG 326
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 245 TCAGAAACCCTATGTTGACCCGAATCTAGACCCGGTTCTTCTAGTTCCAGGAATCGCTGG 304
Query 327 ATCAATTCTAAACGCCGTTGATCATGAGAACGGGAACGAAGAACGTGTTTGGGTTAGGAT 386
|| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 305 CTCGATTCTCAACGCTGTTGATCATGAGAACGGGAATGAAGAACGTGTTTGGGTTAGGAT 364
Query 387 CTTTGGTGCTGATCATGAGTTTCGAACAAAGATGTGGTCTCGATTTGATCCTTCAACTGG 446
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CTTTGGTGCTGATCACGAGTTTCGAACAAAGATGTGGTCTCGATTTGATCCTTCAACTGG 424
Query 447 TAAAACGATATCTCTTGATCCAAAAACGAGTATTGTTGTTCCTCAAGACAGAGCTGGGCT 506
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 425 TAAAACGATCTCTCTTGATCCAAAAACGAGTATTGTTGTTCCTCAAGATAGAGCTGGGCT 484
Query 507 ACATGCAATTGATGTCTTAGACCCTGATATGATTGTTGGCCGTGAGTCTGTGTACTATTT 566
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 485 ACATGCAATTGATGTCTTAGACCCAGATGTGATTGTTGGCCGCGAGTCTGTGTACTATTT 544
Query 567 CCATGAGATGATTGTTGAGATGATCGGATGGGGATTTGAAGAAGGGAAAACCCTTTTTGG 626
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 545 CCATGAGATGATTGTTGAGATGATCGGATGGGGATTCGAAGAAGGGAAAACGCTTTTTGG 604
Query 627 TTTTGGTTATGATTTCCGCCAAAGCAACAGACTGCAGGAAACGTTGGACCAGTTTGCTAA 686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 605 TTTTGGTTATGATTTCCGCCAAAGCAACAGACTGCAGGAAACGTTGGACCAATTTGCTAA 664
Query 687 AAAGTTGGAAACTGTTTATAAAGCCTCAGGAGAGAAGAAGATTAATGTTATTAGTCATTC 746
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 665 AAAGTTGGAAACGGTTTATAAAGCTTCAGGAGAGAAGAAGATTAATGTTATAAGTCATTC 724
Query 747 TATGGGAGGACTATTGGTGAAATGTTTCATGGGTCTGCATAGTGATATATTCGAGAAGTA 806
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TATGGGAGGATTGTTGGTGAAATGTTTCATGGGTCTGCATAGTGATATATTCGAGAAGTA 784
Query 807 TGTACAGAATTGGATTGCTATTGCTGCTCCATTTCGAGGTGCTCCTGGATATATCACATC 866
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 785 TGTACAAAATTGGATTGCTATTGCTGCTCCATTTCGAGGTGCTCCTGGATACATCACATC 844
Query 867 GACTTTATTGAATGGAATGTCGTTTGTCAATGGTTGGGAACAGAACTTTTTCGTCTCTAA 926
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 845 AACTTTACTGAATGGAATGTCGTTTGTCAATGGTTGGGAGCAGAACTTTTTCGTCTCTAA 904
Query 927 GTGGAGCATGCATCAGCTGCTTATTGAGTGTCCATCCATATATGAGCTGATGTGTTGTCC 986
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 905 GTGGAGCATGCATCAGTTGCTTATTGAGTGTCCATCCATATATGAGCTGATGAGTTGTCC 964
Query 987 GTATTTTAAATGGGAGCTCCCTCCCGTCTTAGAGCTGTGGAGAGAGAAAGAGAGCAATGA 1046
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 965 GTATTTTAAATGGGAACTCCCTCCCGTCTTAGAGCTATGGAGAGAGAAAGAGAGCAATGA 1024
Query 1047 TGGAGTTGGAACCTCTTATGTTGTTCTTGAGTCTTACTGTAGCCTGGAGAGCCTTGAAGT 1106
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1025 TGGAGTTGGAACCTCTGATGTTGTTCTTGAGTCTTACCGTAGCCTGGAGAGCCTTGAAGT 1084
Query 1107 TTTTACGAAATCTCTTTCGAATAATACAGCTGATTATTGTGGAGAGTCGATCGATCTTCC 1166
| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1085 TATTACGAAATCTCTTTCGAACAATACAGCTAATTATTGTGGAGAGTCGATCGATCTTCC 1144
Query 1167 TTTTAACTGGAAGATCATGGAGTGGGCTCACAAAACCAAGCAAGTATTAGCCTCTGCCAA 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TTTTAACTGGAAGATCATGGAGTGGGCTCACAAAACCAAGCAAGTATTAGCCTCTGCCAA 1204
Query 1227 GCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAG 1286
||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1205 GCTGCCTCCTCAAGTTAAATTCTATAACATATATGGGACCAATATAGAAACCCCGCATAG 1264
Query 1287 TGTTTGCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TGTTTGCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCA 1324
Query 1347 GCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCCATGGCGGA 1406
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GCCGACATATATATGCGTTGACGGTGATGGCACAGTCCCGATGGAATCTGCCATGGCGGA 1384
Query 1407 TGGGCTTGAAGCAGTAGCAAGAGTTGGAGTCCCTGGTGAGCACCGAGGAATCCTCAACGA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1385 TGGGCTTGAAGCAGTAGCAAGAGTTGGAGTCCCTGGTGAGCACCGAGGAATTCTCAACGA 1444
Query 1467 TCACCGTGTCTTCCGAATGCTCAAAAAATGGCTAAATGTAGGCGAACCAGACCCGTTCTA 1526
||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1445 TCACCGTGTCTTCCGAATGCTCAGAAAATGGCTAAATGTAGGCGAACCTGACCCATTCTA 1504
Query 1527 CAACCCAGTAAACGATTATGTCATCCTTCCCACCACATATGAATTTGAGAAATTCCATGA 1586
||||||| ||||||||||||||||||| |||||||||| |||| | ||||||| ||| ||
Sbjct 1505 CAACCCAATAAACGATTATGTCATCCTCCCCACCACATTTGAAATGGAGAAATACCAGGA 1564
Query 1587 GAATGGACTCGAGGTTGCTTCCGTGAAAGAATCGTGGGA-CATCATATCAGATGACAACA 1645
||| ||||||||||||||||||||||||||||| ||||| | ||||||| || |||||||
Sbjct 1565 GAACGGACTCGAGGTTGCTTCCGTGAAAGAATCATGGGATC-TCATATCGGACGACAACA 1623
Query 1646 ATATCGGCACAACCGGGTCAACCGTGAACTCCATATCAGTCTCTCAACCTGGAGATGATC 1705
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1624 ATATTGGCACAGCCGGGTCAACCGTGAGCTCCATATCAGTCTCTCAACCTGGAGATGATC 1683
Query 1706 AAAACCCTCAAGCTGAAGCTCGTGCAACCTTAACCGTCCAACCACAAAGCGATGGTAGAC 1765
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1684 AAAACCCTCAATCTGAAGCTCGTGCAACCTTAACCGTCCAACCACAAATCGATGGTAGAC 1743
Query 1766 AACATGTAGAGCTCAATGCTGTAAGTGTCTCTGTTGATGCATAAAAACGCATCTTCCCTT 1825
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1744 AACATGTGGAGCTCAATGCTGTAAGTGTCTCTGTTGATGCATAAAAACGCATCTTACCTT 1803
Query 1826 TGTAATGTGTCGTCAAGTGTGTCTTT-GTGTCTGTATATAGCA-A-ATAAATCTCATGCC 1882
|||||||||||||||||||||||||| |||||||||||||| | ||||||| || ||
Sbjct 1804 TGTAATGTGTCGTCAAGTGTGTCTTTTGTGTCTGTATATAGTGTACATAAATC--AT-CC 1860
Query 1883 TCGTGTACATAAATCATCATCATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTACA 1942
| | ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ------A--T----CAT-A--ATAATAAATTTCGTGTTCTTATTATTGTTTAAGCTTACA 1905
Query 1943 AGTTTGGATT 1952
|||| |||||
Sbjct 1906 AGTTAGGATT 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5