BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19865.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946190 jgi|Araly1|946190|scaffold_702419.1 1522 0.0
Ahg329577 jgi|Araly1|329577|fgenesh1_pm.C_scaffold_7001804 1483 0.0
> Ahg946190 jgi|Araly1|946190|scaffold_702419.1
Length=1234
Score = 1522 bits (824), Expect = 0.0
Identities = 1101/1229 (90%), Gaps = 42/1229 (3%)
Strand=Plus/Plus
Query 1 ATGAACTTTCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAACTCGTCTCCACCACAT 60
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 21 ATGAACCTCCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAATTCGTCTCCACCACAA 80
Query 61 TCACCTCC---GTCGTCGTCATCTCCGTCGCTTTCT-CTACTTCCAGAAGAAATCGTCGT 116
|||||||| ||||||||||||||||||||||||| || || || || |||||| ||||
Sbjct 81 TCACCTCCATCGTCGTCGTCATCTCCGTCGCTTTCTTCT-CTCCCTGACGAAATCTTCGT 139
Query 117 GCACTGCTTAGCTCGGATCTCAAGATTGTACTACCCAACGCTCTCACTCGTTTCGAAAAG 176
| ||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 140 GAACTGCTTAGCTCGGATCTCGAGGTCATACTACCCAACACTCTCACTCGTTTCGAAAAG 199
Query 177 CTTCCGCTCAATTCTCTCTTCCACGGAGCTCTACGCAACCAGATCTCACCTCGGAAGCAC 236
|||||| ||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct 200 CTTCCGTTCAATTCTCTCTTCCACCGAGCTCTTCGCAGCCAGATCTCACATCGGAAGCAC 259
Query 237 TGAACAGTGTGTCTATCTCTGTCTATGGGATCCCAGTTATCAATTTCCCCAATGGCTTAG 296
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 260 TGAACAGTGTGTCTATGTCTGTCTATGGGATCGCAGTTATCAATTTCCCCAATGGCTTAG 319
Query 297 ACTCTTAGTTAACCCTAACCGAACCCTAGCCAACTCCATCATTaagaagagaaggaagaa 356
||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 320 ACTATGGGTTAACCCTAATCGAACCCTAGCCAACTCCATGATTAAGAAGAGAAGGAAGAA 379
Query 357 gaagaaga---CAACTGGACAAATGTTAGTTCCGCTTACCTCGTCTAAGTTTACATCAGT 413
|||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||| ||
Sbjct 380 GAAGAAGAAGACAACTGGACCAATGTTAGTTCCGATTACCTCGTCTAATTTTACATCTGT 439
Query 414 ATCAAAAGCCACCGTTGTAGTTGGTTCTGAGATTTATGTACTTGGCGGTCCAGTCGACTC 473
|||||||||||||||||| |||||||| || ||||||||| ||||||| |||||||||||
Sbjct 440 ATCAAAAGCCACCGTTGTTGTTGGTTCAGAAATTTATGTAATTGGCGGCCCAGTCGACTC 499
Query 474 CG--CC----------GTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 521
| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TGAACCATCCTCCACCGTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 559
Query 522 GAGCATGAATGTA-TCCCGAATGAATGCCTGGGCATGTTTCCACGATGGGAAAATTTACG 580
|||||||| | || ||| |||||||||| | |||||||||||||||||||||||| || |
Sbjct 560 GAGCATGACTATAGTCC-GAATGAATGCGTTGGCATGTTTCCACGATGGGAAAATATATG 618
Query 581 TAATGGGAGGTTGCCAAGGATTAAAGGACGAACCATGGGCTGAGGTGTTCAATACAAAGA 640
|||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 619 TAATGGGAGGGTGCCAAGGATTAGAGGACGAACCATGGGCTGAGGTGTTCGATACAAAGA 678
Query 641 CTCAGACTTGGGAAGGCCTCCCTGAGCCGGGTAGTGAGGTACGTAAGTGTTCCATTGACA 700
|| |||||||| || ||| |||||||||| || |||||||||||||||||||||| |||
Sbjct 679 CTAAGACTTGGCAACACCTTCCTGAGCCGGATACTGAGGTACGTAAGTGTTCCATTTACA 738
Query 701 GAAGCGGAGTGATTGAAGGAAA-GATTGAGTTTGGAAATGTAAACGAGATGTGTGCTTAC 759
| | | || |||||||| ||| |||| ||||||| ||||||||||||| || |||||||
Sbjct 739 GTATTGCAGAGATTGAAG-AAACGATTCAGTTTGGGAATGTAAACGAGACGTATGCTTAC 797
Query 760 GACACGAAGCTATGTAAATGGGAGTATT-GTGTAAA-CAAAAGTGCAGCTTTGAGGTCAG 817
||||||||| |||||||||||| | ||||||| ||||||| | || |||||
Sbjct 798 CACACGAAGCAATGTAAATGGGAA-AGCCGTGTAAAACAAAAGT-----T--GAAGTCAG 849
Query 818 AATGTATGATTGAGAATGTTTCATATGGCT-TCTGGAACATGCGCTTGTTGTGGTATGAC 876
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 850 AATGTATGATTGAGAATGTTTCATATGGCTAT-TGGAATATGCGCTTGTTGTGGTATGAC 908
Query 877 AATGACATACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGAGTCACTAGATGATAAG 936
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 909 AATGACTTACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGACTCACTAGATGAGATG 968
Query 937 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTT-GCATGTGGTGGGAA 995
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 969 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTTAGC-TGTGGTGGGAA 1027
Query 996 ACTCTTACTTTTATGGGAAGGATATATGAAGCATAACCCCAATAATAGGAAGAAGATTTG 1055
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1028 ACTCTTACTTTTATGGGAAGGGTATATGAAGCATAATCCCAATAATAGGAAGAAGATTTG 1087
Query 1056 GTGTGCGGTGATCGCGATAGAGAAGTGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1115
||| || | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 GTGCGCTGAAATCGCTATAGAAAAGCGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1147
Query 1116 TGTTGATGTTTTGTATA-CTGTCCCCATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1174
||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1148 GGTTGAGGTTTTGCATAAC-GTCCCTATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1206
Query 1175 CGGTTTGATTGACTTGTATTCA-GGTATG 1202
||||||||||||||||||| || ||||||
Sbjct 1207 CGGTTTGATTGACTTGTAT-CAAGGTATG 1234
> Ahg329577 jgi|Araly1|329577|fgenesh1_pm.C_scaffold_7001804
Length=2340
Score = 1483 bits (803), Expect = 0.0
Identities = 1071/1195 (90%), Gaps = 40/1195 (3%)
Strand=Plus/Plus
Query 14 TGGAACCACCGGAGAAGAAGAAGACTAAGAACTCGTCTCCACCACATTCACCTCC---GT 70
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1160 TGGAACCACCGGAGAAGAAGAAGACTAAGAATTCGTCTCCACCACAATCACCTCCATCGT 1219
Query 71 CGTCGTCATCTCCGTCGCTTTCT-CTACTTCCAGAAGAAATCGTCGTGCACTGCTTAGCT 129
||||||||||||||||||||||| || || || || |||||| ||||| |||||||||||
Sbjct 1220 CGTCGTCATCTCCGTCGCTTTCTTCT-CTCCCTGACGAAATCTTCGTGAACTGCTTAGCT 1278
Query 130 CGGATCTCAAGATTGTACTACCCAACGCTCTCACTCGTTTCGAAAAGCTTCCGCTCAATT 189
|||||||| || | ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1279 CGGATCTCGAGGTCATACTACCCAACACTCTCACTCGTTTCGAAAAGCTTCCGTTCAATT 1338
Query 190 CTCTCTTCCACGGAGCTCTACGCAACCAGATCTCACCTCGGAAGCACTGAACAGTGTGTC 249
||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 1339 CTCTCTTCCACCGAGCTCTTCGCAGCCAGATCTCACATCGGAAGCACTGAACAGTGTGTC 1398
Query 250 TATCTCTGTCTATGGGATCCCAGTTATCAATTTCCCCAATGGCTTAGACTCTTAGTTAAC 309
||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 1399 TATGTCTGTCTATGGGATCGCAGTTATCAATTTCCCCAATGGCTTAGACTATGGGTTAAC 1458
Query 310 CCTAACCGAACCCTAGCCAACTCCATCATTaagaagagaaggaagaagaagaaga---CA 366
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1459 CCTAATCGAACCCTAGCCAACTCCATGATTAAGAAGAGAAGGAAGAAGAAGAAGAAGACA 1518
Query 367 ACTGGACAAATGTTAGTTCCGCTTACCTCGTCTAAGTTTACATCAGTATCAAAAGCCACC 426
||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1519 ACTGGACCAATGTTAGTTCCGATTACCTCGTCTAATTTTACATCTGTATCAAAAGCCACC 1578
Query 427 GTTGTAGTTGGTTCTGAGATTTATGTACTTGGCGGTCCAGTCGACTCCG--CC------- 477
||||| |||||||| || ||||||||| ||||||| ||||||||||| | ||
Sbjct 1579 GTTGTTGTTGGTTCAGAAATTTATGTAATTGGCGGCCCAGTCGACTCTGAACCATCCTCC 1638
Query 478 ---GTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACCGAGCATGAATGTA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1639 ACCGTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACCGAGCATGACTATA 1698
Query 535 -TCCCGAATGAATGCCTGGGCATGTTTCCACGATGGGAAAATTTACGTAATGGGAGGTTG 593
||| |||||||||| | |||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1699 GTCC-GAATGAATGCGTTGGCATGTTTCCACGATGGGAAAATATATGTAATGGGAGGGTG 1757
Query 594 CCAAGGATTAAAGGACGAACCATGGGCTGAGGTGTTCAATACAAAGACTCAGACTTGGGA 653
|||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1758 CCAAGGATTAGAGGACGAACCATGGGCTGAGGTGTTCGATACAAAGACTAAGACTTGGCA 1817
Query 654 AGGCCTCCCTGAGCCGGGTAGTGAGGTACGTAAGTGTTCCATTGACAGAAGCGGAGTGAT 713
| ||| |||||||||| || |||||||||||||||||||||| |||| | | || |||
Sbjct 1818 ACACCTTCCTGAGCCGGATACTGAGGTACGTAAGTGTTCCATTTACAGTATTGCAGAGAT 1877
Query 714 TGAAGGAAA-GATTGAGTTTGGAAATGTAAACGAGATGTGTGCTTACGACACGAAGCTAT 772
||||| ||| |||| ||||||| ||||||||||||| || ||||||| ||||||||| ||
Sbjct 1878 TGAAG-AAACGATTCAGTTTGGGAATGTAAACGAGACGTATGCTTACCACACGAAGCAAT 1936
Query 773 GTAAATGGGAGTATT-GTGTAAA-CAAAAGTGCAGCTTTGAGGTCAGAATGTATGATTGA 830
|||||||||| | ||||||| ||||||| | || ||||||||||||||||||
Sbjct 1937 GTAAATGGGAA-AGCCGTGTAAAACAAAAGT-----T--GAAGTCAGAATGTATGATTGA 1988
Query 831 GAATGTTTCATATGGCT-TCTGGAACATGCGCTTGTTGTGGTATGACAATGACATACAAA 889
||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1989 GAATGTTTCATATGGCTAT-TGGAATATGCGCTTGTTGTGGTATGACAATGACTTACAAA 2047
Query 890 AGGATTATTGGAAAAGATTGGAAGGGTTAGAGTCACTAGATGATAAGTACATGAGGAATG 949
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 2048 AGGATTATTGGAAAAGATTGGAAGGGTTAGACTCACTAGATGAGATGTACATGAGGAATG 2107
Query 950 GTGGCTCAAGTGGTAATACGACTAAACTAGTT-GCATGTGGTGGGAAACTCTTACTTTTA 1008
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2108 GTGGCTCAAGTGGTAATACGACTAAACTAGTTAGC-TGTGGTGGGAAACTCTTACTTTTA 2166
Query 1009 TGGGAAGGATATATGAAGCATAACCCCAATAATAGGAAGAAGATTTGGTGTGCGGTGATC 1068
|||||||| |||||||||||||| |||||||||||||||||||||||||| || | |||
Sbjct 2167 TGGGAAGGGTATATGAAGCATAATCCCAATAATAGGAAGAAGATTTGGTGCGCTGAAATC 2226
Query 1069 GCGATAGAGAAGTGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAGTGTTGATGTTTTG 1128
|| ||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2227 GCTATAGAAAAGCGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAGGGTTGAGGTTTTG 2286
Query 1129 TATA-CTGTCCCCATATCATGTCAGCTCTTGCATTGTCTCGTTGTCTCGGTTTGA 1182
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 CATAAC-GTCCCTATATCATGTCAGCTCTTGCATTGTCTCGTTGTCTCGGTTTGA 2340
Score = 717 bits (388), Expect = 0.0
Identities = 904/1137 (80%), Gaps = 99/1137 (9%)
Strand=Plus/Plus
Query 65 CTCCGTCGTCGTCATCTCCGTCGCTTTC-TCTACTTCCAGAAGAAATCGTCGTGCACTGC 123
||| |||| |||||||||||||| |||| ||| || ||||| |||||||||||| |||||
Sbjct 68 CTCTGTCGCCGTCATCTCCGTCGTTTTCTTCT-CTCCCAGACGAAATCGTCGTGAACTGC 126
Query 124 TTAGCTCGGATCTCAAGATTGTACTACCCAACGCTCTCACTCGTTTCGAAAAGCTTCCGC 183
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 127 TTAGCTCGGATCTCAAGATTGTACTACTCAACACTCTCAATCGTTTCGAAAAGCTTCCGC 186
Query 184 TCAATTCTCTCTTCCACGGAGCTCTACGCAACCAGATCTCACCTCGGAAGCACTGAACAG 243
||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||
Sbjct 187 TCAATTCTCTCTTCCACCGAGCTCTACGCAGTTAGATCTCACCTCGGAAGCACCGAGCAG 246
Query 244 TGTGTCTATCTCTGTCTATGGGATCCCAGTTATCAATTTCCCCAATGGCTTAGACTCTT- 302
||||||||| |||||||| ||||| |||||||||||||| ||||| ||| |||||
Sbjct 247 TGTGTCTATGTCTGTCTACGGGATAAAAGTTATCAATTTCCGAAATGGTTTACACTCTGG 306
Query 303 AGTTAACCCTAACCGAACCCTAGCCAACTCCATCATTaagaaga-gaaggaagaagaaga 361
| | |||||||| ||| ||||||||||| ||| |||||| || ||||||| ||||
Sbjct 307 ACT-AACCCTAATCGA------GCCAACTCCATGATTGAGAAGAAGA-GGAAGAAAAAGA 358
Query 362 agaCAACTGGACAAATGTTAGTTCC-GCTTACCTCGTCTAAGTTTACATCA-GTATCAAA 419
||| || | | || ||||| ||| ||||| ||||| ||| ||| | |||||| |
Sbjct 359 AGATAATT--A----TG---GTTCCAGCT-ACCTCTTCTAATTTTCCAT-ATGTATCACA 407
Query 420 AGCCACCGTTGTAGTTGGTTCTGAGATTTATGT-A-CT-TGGCGGTCCAGTCGACTCCGC 476
| || |||| || ||||||||||| |||||||| | | | | | || || ||| ||
Sbjct 408 ATCCGCCGTAGTTGTTGGTTCTGAAATTTATGTTATCGATAGAGCACCT-TC--CTCTGC 464
Query 477 CGTGCGGGTGCTTGA-TTGTTGCAGTCACACTTGGCGCGATGCACCGAGCATGAATGTAT 535
||| |||| || | |||| |||||||||||||||| ||||| || || |||| |||
Sbjct 465 TGTGAGGGTCCTC-ACTTGTGGCAGTCACACTTGGCGTGATGCCCCTAGTATGACCGTAG 523
Query 536 CCCG-AATGAATGCC-TGGGC-ATGTTTCCACGATGGGAAAATTTACGTAATGGGAGGTT 592
|||| || |||||| | |||||| || |||||||||| || ||||||||||| |
Sbjct 524 CCCGGAA-GAATGCAATCATTTATGTTTACA--ATGGGAAAATCTATGTAATGGGAGGGT 580
Query 593 GCCAAGGATTAAAGGACGAACCATGGGCTGAGGTGTTCAATACAAAGACTCAGACTTGGG 652
| |||||||| |||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 581 GTGAAGGATTAGAGGATGAACCATGGGCTGAGGTATTTGATACAAAGACTCAGACTTGGG 640
Query 653 AAGGCCTCCCTGAGCCGGGTAGTGAGGTACGTAAGTGTTCCATTGACAGAAGCGGAGTGA 712
|| ||| ||||| ||||||| ||||||||||||| ||| |||| ||| | ||||| ||
Sbjct 641 AACCCCTTCCTGATCCGGGTACTGAGGTACGTAAGAGTTACATTTTCAGTATCGGAGAGA 700
Query 713 TTGAAGGAAAGATTGAG-TT---T--GGAAATGTAAACGAGATGTGTGCTTACGACACGA 766
| |||||||||||| || || | || | | |||| ||||||| |||||| |||||||
Sbjct 701 TCGAAGGAAAGATTCAGATTCACTTTGGGACTTTAAAGGAGATGTATGCTTATGACACGA 760
Query 767 AGCTATGTAAATGGGAGTATTGTGTAAACAAA-AGTGCAGCTT-TG--AGGTCAGAATGT 822
||| |||||||||||| | ||||||||||| | |||| | | || ||| ||||||||
Sbjct 761 AGCAATGTAAATGGGAAAACCGTGTAAACAAATA-TGCAACGTATGCGAGGCCAGAATGT 819
Query 823 ATGATTGAGAATGT-T--T-CA--TATGGCTTC------TGG-A-ACAT-G-CG---CTT 863
|||||||||||||| | | | | || |||| ||| | | || | || |
Sbjct 820 ATGATTGAGAATGTATCCTTCTCCTTTG-CTTCCGAGGGTGGTATATATCGTCGAGACCA 878
Query 864 GTT--G-TGGTATGACAATGACATACAAAAGGATTATTGGAAA-AGATTGGAAGGGTTAG 919
||| | ||||||||||| | | | ||| || |||||||||| || | | |||||||||
Sbjct 879 GTTCCGGTGGTATGACAA--A-A-A-AAAGGG-TTATTGGAAAGAGGT-GAAAGGGTTAG 931
Query 920 AGTCACTAGATGATA-AG-TACATG-AGGAATGGTGGCTCAAGTGGTAATACGACTAAAC 976
| ||| || | | | || |||| | | |||||||||||||||| |||||||||| |||
Sbjct 932 ACTCATTAC-T-ACAGAGGTACA-GCAAGAATGGTGGCTCAAGTCATAATACGACTGAAC 988
Query 977 TAGTT-GCATGTGGTGGGAAACTCTTACTT-TTATGGGAAGGATATATGAAGCATAACCC 1034
||||| || ||||||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct 989 TAGTTAGC-TGTGGTGGGAAACTCTTACTTATT-TGGGAAGGGTATATGAAGCATAATCC 1046
Query 1035 CAATAATAGGAAGAAGATTTGGTGTGCGGTGATCGCGATAGAGAAGTG-TGATGGAGGTG 1093
|||| ||||||||||||||||||| |||| |||| |||||| || | |||||||| ||
Sbjct 1047 CAATGATAGGAAGAAGATTTGGTGCGCGGAAATCGGGATAGAAAA-TCATGATGGAGATG 1105
Query 1094 GAG-TTTGGGG-AATTGTTGAGAGTGTT-GATGTTTTGTATACTGTCCCCATATCAT 1147
|| ||||||| ||| |||||| | ||| ||||||||| |||| ||||||| |||||
Sbjct 1106 -AGCTTTGGGGGAAT-GTTGAGTG-GTTTGATGTTTTGCATACCGTCCCCACATCAT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5