BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19880.2

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803          1820    0.0  
  Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417                     686    0.0  


> Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803
Length=1158

 Score = 1820 bits (985),  Expect = 0.0
 Identities = 1104/1160 (95%), Gaps = 13/1160 (1%)
 Strand=Plus/Plus

Query  48    ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCTCTCTCGCTTCAAAGTTCACT  107
             ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  1     ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCGCTTTCGCTTCAAAGTTCACT  60

Query  108   ACTCGTGGATCTCGTCTTCAGTGTACAGTATCAATGGCTCGATCTGCGGTTGATGAGACA  167
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61    ACTCGTGGATCTCGTCTTCAGTGTACATTATCAATGGCTCGATCTGCGGTTGATGAGACA  120

Query  168   TCAGATTCAGGAGCTTTTCAAAGAACTGCATCGACATTCCGTAACTTCGTTTCAAAAGAT  227
             |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| ||||
Sbjct  121   TCAGATTCAGGAGCTTTTCAAAGAACTGCATCAACATTTCGAAACTTTGTTTCAAGAGAT  180

Query  228   TCCAATTCTCAGTTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT  287
             || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   TCAAATTCTCAATTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT  240

Query  288   CCATGGGCTTCTAGATGCCTTTCATACTTAAAGATCAAAGGACTTGACGATGCAATAAGC  347
             ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  241   CCATGGGCTTCTAGATGTCTTTCATACTTGAAGATCAAAGGACTTGACGATGCAATAAGC  300

Query  348   TTCTCGTCTGTAAAACCCATTTGGGGAAGAACCAAAGAAACCGATGAACATATGGGATGG  407
             |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  301   TTCTCGTCTGTAAAACCCATTTGGGGAAGAACTAAAGAAACCGATGAGCATATGGGATGG  360

Query  408   GTCTTTCCAG-GTTCAGATACCGAAGTTCCAGGAGCTGATCCTGACCATCTTAATGGTGC  466
             |||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct  361   GTCTTTCC-GAGTTCAGATACCGAGGTTCAAGGAGCTGATCCTGATCATCTTAATGGTGC  419

Query  467   TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACCGGGAAGTATACTGT  526
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  420   TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACTGGGAAGTATACTGT  479

Query  527   TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT  586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480   TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT  539

Query  587   CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTTGATCTTTACCC  646
             |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  540   CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTCGACCTTTACCC  599

Query  647   TTCCCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATTTACAATGGGATAAATAA  706
             ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  600   TTCTCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATCTACAATGGGATAAATAA  659

Query  707   TGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTGGAGCA  766
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  660   CGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTTGAGCA  719

Query  767   AGTGTATGAAGCATTAGATAGATGTGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG  826
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  720   AGTGTATGAAGCATTAGATAGATGCGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG  779

Query  827   TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT  886
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  780   TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT  839

Query  887   AA--G-TTC-A-TAC-T--TTC-AAAGCAAGAAAAAGAAGTACACCATATGTGAACGAAT  937
             ||  | ||| | | | |  ||| ||| ||||||||||||  |||| ||||| |||| |||
Sbjct  840   AATAGATTCGAGTTCATACTTCCAAACCAAGAAAAAGAAACACACAATATGCGAACAAAT  899

Query  938   CTCTAATGTTGAAACGTTGATCCAGGTTTATGCAGTCCACTTCAAATGCAACAAGAAACT  997
             || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  900   CTGTAATGTTGAAACGTTGATGCAGGTTTATGCGGTCCACTTCAAATGCAACAAGAAACT  959

Query  998   CATAAGGGAGTATCCGAAT-TTGTTCAACTACACGAAAGACATTTTCCAGATCCCCGGTA  1056
              |||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct  960   GATAAGGGAGTATCCGAATCTT-TTCAACTACACGAAAGACATTTTCCAAATCCCGGGTA  1018

Query  1057  TGAGTAGCACGGTTAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA  1116
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1019  TGAGTAGCACGGTGAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA  1078

Query  1117  TCAACCCTTTTGGGATCATCCCTCATGGACCAAACATCGATTACACTTCGCCTCATGATC  1176
             |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  1079  TCAACCCTTTCGGAATCATCCCTCATGGACCAAACATCGATTACACATCCCCTCATGATC  1138

Query  1177  GACACAGATTCTCCAAATGA  1196
             ||||||||||||||||||||
Sbjct  1139  GACACAGATTCTCCAAATGA  1158


> Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417
Length=978

 Score =  686 bits (371),  Expect = 0.0
 Identities = 631/756 (83%), Gaps = 20/756 (3%)
 Strand=Plus/Plus

Query  141  ATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATCG  200
            |||||| | |||| |||||||||||||||||| || |||||||||  |||||| ||||| 
Sbjct  1    ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA  60

Query  201  ACATTCCGTAACTTCGTTTCAAAAGATTCC-AATTCTCAGTTTCCAGCTGAATCTGGTAG  259
            |||||||| ||||| |||||| |||| |||  |||||||||||| ||||||||| || ||
Sbjct  61   ACATTCCGCAACTTTGTTTCACAAGA-TCCTCATTCTCAGTTTCTAGCTGAATCAGGAAG  119

Query  260  ATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAA  319
            |||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||
Sbjct  120  ATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAA  179

Query  320  GATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAAC  379
             |||||||||||||| || ||||| ||||||||||| ||  |  | ||||||||||||||
Sbjct  180  AATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAAC  239

Query  380  CAAAGAAACCGATGAACATATG-GGATGGGTCTTT-CCAGGTTCAGATACCGAAG-TTCC  436
            ||| ||||| ||||| |||| | |||||||| ||| |||| ||| ||| ||| || | ||
Sbjct  240  CAAGGAAACTGATGATCATA-GAGGATGGGT-TTTCCCAGATTCGGATGCCG-AGCTCCC  296

Query  437  AGGAGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGC  496
             |||||||| |||||| ||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct  297  TGGAGCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGC  356

Query  497  TAGCCCAAACTA-CACCGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAAAA  555
            |||||| |||||  |  |||||||| ||||||||| ||||||||||||||||||| || |
Sbjct  357  TAGCCCCAACTATGA-GGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGA  415

Query  556  CTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCATA  615
            |||| |||||||| |||||| | || ||||||||||||||||||||||||||||||  ||
Sbjct  416  CTGTAGTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTA  475

Query  616  TTGCGGGAAATCC-TGATCTTGATCTTTACCCTTCCCATCTCCA-AG-CTAAAATCGATG  672
            |||||  ||| || | | || || ||||| ||||| |||||| | || | |  ||||| |
Sbjct  476  TTGCGAAAAACCCGTCA-CTCGACCTTTATCCTTCTCATCTC-AGAGAC-ACGATCGACG  532

Query  673  AAACTAATGAATGGATTTACAATGGGATAAATAATGGTGTCTATAGATGCGGGTTTGCAA  732
            | ||||| |||||| ||| ||| |||||||| |||||||| |||| ||| || ||||| |
Sbjct  533  AGACTAACGAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTA  592

Query  733  AGAAACAAGGACCTTATGAGGAGGCAGTGGAGCAAGTGTAT--GAAGCATTAGATAGATG  790
             |||||||| ||| ||  | ||||||||| | || || |||  |||||| ||||||||||
Sbjct  593  GGAAACAAGAACCCTACAATGAGGCAGTGAACCA-GT-TATACGAAGCAGTAGATAGATG  650

Query  791  TGAGGAGATTCTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAGATAT  850
            |||||| || ||  ||||||| || |||||||| || |||||||| |||||| |||||||
Sbjct  651  TGAGGAAATACTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATAT  710

Query  851  CAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT  886
            | |||| || | ||| || ||||||||||| |||||
Sbjct  711  CCGATTATTCGCCACTCTCATAAGATTTGATGAGGT  746



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55992660150


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5