BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19880.2
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803 1820 0.0
Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417 686 0.0
> Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803
Length=1158
Score = 1820 bits (985), Expect = 0.0
Identities = 1104/1160 (95%), Gaps = 13/1160 (1%)
Strand=Plus/Plus
Query 48 ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCTCTCTCGCTTCAAAGTTCACT 107
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCGCTTTCGCTTCAAAGTTCACT 60
Query 108 ACTCGTGGATCTCGTCTTCAGTGTACAGTATCAATGGCTCGATCTGCGGTTGATGAGACA 167
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ACTCGTGGATCTCGTCTTCAGTGTACATTATCAATGGCTCGATCTGCGGTTGATGAGACA 120
Query 168 TCAGATTCAGGAGCTTTTCAAAGAACTGCATCGACATTCCGTAACTTCGTTTCAAAAGAT 227
|||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| ||||
Sbjct 121 TCAGATTCAGGAGCTTTTCAAAGAACTGCATCAACATTTCGAAACTTTGTTTCAAGAGAT 180
Query 228 TCCAATTCTCAGTTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT 287
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAAATTCTCAATTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT 240
Query 288 CCATGGGCTTCTAGATGCCTTTCATACTTAAAGATCAAAGGACTTGACGATGCAATAAGC 347
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CCATGGGCTTCTAGATGTCTTTCATACTTGAAGATCAAAGGACTTGACGATGCAATAAGC 300
Query 348 TTCTCGTCTGTAAAACCCATTTGGGGAAGAACCAAAGAAACCGATGAACATATGGGATGG 407
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 TTCTCGTCTGTAAAACCCATTTGGGGAAGAACTAAAGAAACCGATGAGCATATGGGATGG 360
Query 408 GTCTTTCCAG-GTTCAGATACCGAAGTTCCAGGAGCTGATCCTGACCATCTTAATGGTGC 466
|||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 361 GTCTTTCC-GAGTTCAGATACCGAGGTTCAAGGAGCTGATCCTGATCATCTTAATGGTGC 419
Query 467 TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACCGGGAAGTATACTGT 526
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACTGGGAAGTATACTGT 479
Query 527 TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT 539
Query 587 CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTTGATCTTTACCC 646
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 540 CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTCGACCTTTACCC 599
Query 647 TTCCCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATTTACAATGGGATAAATAA 706
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TTCTCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATCTACAATGGGATAAATAA 659
Query 707 TGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTGGAGCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 CGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTTGAGCA 719
Query 767 AGTGTATGAAGCATTAGATAGATGTGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG 826
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 AGTGTATGAAGCATTAGATAGATGCGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG 779
Query 827 TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 839
Query 887 AA--G-TTC-A-TAC-T--TTC-AAAGCAAGAAAAAGAAGTACACCATATGTGAACGAAT 937
|| | ||| | | | | ||| ||| |||||||||||| |||| ||||| |||| |||
Sbjct 840 AATAGATTCGAGTTCATACTTCCAAACCAAGAAAAAGAAACACACAATATGCGAACAAAT 899
Query 938 CTCTAATGTTGAAACGTTGATCCAGGTTTATGCAGTCCACTTCAAATGCAACAAGAAACT 997
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 900 CTGTAATGTTGAAACGTTGATGCAGGTTTATGCGGTCCACTTCAAATGCAACAAGAAACT 959
Query 998 CATAAGGGAGTATCCGAAT-TTGTTCAACTACACGAAAGACATTTTCCAGATCCCCGGTA 1056
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 960 GATAAGGGAGTATCCGAATCTT-TTCAACTACACGAAAGACATTTTCCAAATCCCGGGTA 1018
Query 1057 TGAGTAGCACGGTTAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA 1116
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGAGTAGCACGGTGAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA 1078
Query 1117 TCAACCCTTTTGGGATCATCCCTCATGGACCAAACATCGATTACACTTCGCCTCATGATC 1176
|||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1079 TCAACCCTTTCGGAATCATCCCTCATGGACCAAACATCGATTACACATCCCCTCATGATC 1138
Query 1177 GACACAGATTCTCCAAATGA 1196
||||||||||||||||||||
Sbjct 1139 GACACAGATTCTCCAAATGA 1158
> Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417
Length=978
Score = 686 bits (371), Expect = 0.0
Identities = 631/756 (83%), Gaps = 20/756 (3%)
Strand=Plus/Plus
Query 141 ATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATCG 200
|||||| | |||| |||||||||||||||||| || ||||||||| |||||| |||||
Sbjct 1 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 60
Query 201 ACATTCCGTAACTTCGTTTCAAAAGATTCC-AATTCTCAGTTTCCAGCTGAATCTGGTAG 259
|||||||| ||||| |||||| |||| ||| |||||||||||| ||||||||| || ||
Sbjct 61 ACATTCCGCAACTTTGTTTCACAAGA-TCCTCATTCTCAGTTTCTAGCTGAATCAGGAAG 119
Query 260 ATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAA 319
|||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 120 ATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAA 179
Query 320 GATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAAC 379
|||||||||||||| || ||||| ||||||||||| || | | ||||||||||||||
Sbjct 180 AATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAAC 239
Query 380 CAAAGAAACCGATGAACATATG-GGATGGGTCTTT-CCAGGTTCAGATACCGAAG-TTCC 436
||| ||||| ||||| |||| | |||||||| ||| |||| ||| ||| ||| || | ||
Sbjct 240 CAAGGAAACTGATGATCATA-GAGGATGGGT-TTTCCCAGATTCGGATGCCG-AGCTCCC 296
Query 437 AGGAGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGC 496
|||||||| |||||| ||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 297 TGGAGCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGC 356
Query 497 TAGCCCAAACTA-CACCGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAAAA 555
|||||| ||||| | |||||||| ||||||||| ||||||||||||||||||| || |
Sbjct 357 TAGCCCCAACTATGA-GGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGA 415
Query 556 CTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCATA 615
|||| |||||||| |||||| | || |||||||||||||||||||||||||||||| ||
Sbjct 416 CTGTAGTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTA 475
Query 616 TTGCGGGAAATCC-TGATCTTGATCTTTACCCTTCCCATCTCCA-AG-CTAAAATCGATG 672
||||| ||| || | | || || ||||| ||||| |||||| | || | | ||||| |
Sbjct 476 TTGCGAAAAACCCGTCA-CTCGACCTTTATCCTTCTCATCTC-AGAGAC-ACGATCGACG 532
Query 673 AAACTAATGAATGGATTTACAATGGGATAAATAATGGTGTCTATAGATGCGGGTTTGCAA 732
| ||||| |||||| ||| ||| |||||||| |||||||| |||| ||| || ||||| |
Sbjct 533 AGACTAACGAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTA 592
Query 733 AGAAACAAGGACCTTATGAGGAGGCAGTGGAGCAAGTGTAT--GAAGCATTAGATAGATG 790
|||||||| ||| || | ||||||||| | || || ||| |||||| ||||||||||
Sbjct 593 GGAAACAAGAACCCTACAATGAGGCAGTGAACCA-GT-TATACGAAGCAGTAGATAGATG 650
Query 791 TGAGGAGATTCTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAGATAT 850
|||||| || || ||||||| || |||||||| || |||||||| |||||| |||||||
Sbjct 651 TGAGGAAATACTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATAT 710
Query 851 CAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 886
| |||| || | ||| || ||||||||||| |||||
Sbjct 711 CCGATTATTCGCCACTCTCATAAGATTTGATGAGGT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5