BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19880.2 Length=1496 Score E Sequences producing significant alignments: (Bits) Value Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803 1820 0.0 Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417 686 0.0 > Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803 Length=1158 Score = 1820 bits (985), Expect = 0.0 Identities = 1104/1160 (95%), Gaps = 13/1160 (1%) Strand=Plus/Plus Query 48 ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCTCTCTCGCTTCAAAGTTCACT 107 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1 ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCGCTTTCGCTTCAAAGTTCACT 60 Query 108 ACTCGTGGATCTCGTCTTCAGTGTACAGTATCAATGGCTCGATCTGCGGTTGATGAGACA 167 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 ACTCGTGGATCTCGTCTTCAGTGTACATTATCAATGGCTCGATCTGCGGTTGATGAGACA 120 Query 168 TCAGATTCAGGAGCTTTTCAAAGAACTGCATCGACATTCCGTAACTTCGTTTCAAAAGAT 227 |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| |||| Sbjct 121 TCAGATTCAGGAGCTTTTCAAAGAACTGCATCAACATTTCGAAACTTTGTTTCAAGAGAT 180 Query 228 TCCAATTCTCAGTTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT 287 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCAAATTCTCAATTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGT 240 Query 288 CCATGGGCTTCTAGATGCCTTTCATACTTAAAGATCAAAGGACTTGACGATGCAATAAGC 347 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 CCATGGGCTTCTAGATGTCTTTCATACTTGAAGATCAAAGGACTTGACGATGCAATAAGC 300 Query 348 TTCTCGTCTGTAAAACCCATTTGGGGAAGAACCAAAGAAACCGATGAACATATGGGATGG 407 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 301 TTCTCGTCTGTAAAACCCATTTGGGGAAGAACTAAAGAAACCGATGAGCATATGGGATGG 360 Query 408 GTCTTTCCAG-GTTCAGATACCGAAGTTCCAGGAGCTGATCCTGACCATCTTAATGGTGC 466 |||||||| | ||||||||||||| |||| ||||||||||||||| |||||||||||||| Sbjct 361 GTCTTTCC-GAGTTCAGATACCGAGGTTCAAGGAGCTGATCCTGATCATCTTAATGGTGC 419 Query 467 TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACCGGGAAGTATACTGT 526 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 TAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACTGGGAAGTATACTGT 479 Query 527 TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAAT 539 Query 587 CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTTGATCTTTACCC 646 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 540 CCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTCGACCTTTACCC 599 Query 647 TTCCCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATTTACAATGGGATAAATAA 706 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 600 TTCTCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATCTACAATGGGATAAATAA 659 Query 707 TGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTGGAGCA 766 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 660 CGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTTGAGCA 719 Query 767 AGTGTATGAAGCATTAGATAGATGTGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG 826 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 720 AGTGTATGAAGCATTAGATAGATGCGAGGAGATTCTTGGAAAACATCGGTACATCTGTGG 779 Query 827 TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 839 Query 887 AA--G-TTC-A-TAC-T--TTC-AAAGCAAGAAAAAGAAGTACACCATATGTGAACGAAT 937 || | ||| | | | | ||| ||| |||||||||||| |||| ||||| |||| ||| Sbjct 840 AATAGATTCGAGTTCATACTTCCAAACCAAGAAAAAGAAACACACAATATGCGAACAAAT 899 Query 938 CTCTAATGTTGAAACGTTGATCCAGGTTTATGCAGTCCACTTCAAATGCAACAAGAAACT 997 || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 900 CTGTAATGTTGAAACGTTGATGCAGGTTTATGCGGTCCACTTCAAATGCAACAAGAAACT 959 Query 998 CATAAGGGAGTATCCGAAT-TTGTTCAACTACACGAAAGACATTTTCCAGATCCCCGGTA 1056 |||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 960 GATAAGGGAGTATCCGAATCTT-TTCAACTACACGAAAGACATTTTCCAAATCCCGGGTA 1018 Query 1057 TGAGTAGCACGGTTAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA 1116 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TGAGTAGCACGGTGAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGA 1078 Query 1117 TCAACCCTTTTGGGATCATCCCTCATGGACCAAACATCGATTACACTTCGCCTCATGATC 1176 |||||||||| || |||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1079 TCAACCCTTTCGGAATCATCCCTCATGGACCAAACATCGATTACACATCCCCTCATGATC 1138 Query 1177 GACACAGATTCTCCAAATGA 1196 |||||||||||||||||||| Sbjct 1139 GACACAGATTCTCCAAATGA 1158 > Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417 Length=978 Score = 686 bits (371), Expect = 0.0 Identities = 631/756 (83%), Gaps = 20/756 (3%) Strand=Plus/Plus Query 141 ATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATCG 200 |||||| | |||| |||||||||||||||||| || ||||||||| |||||| ||||| Sbjct 1 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 60 Query 201 ACATTCCGTAACTTCGTTTCAAAAGATTCC-AATTCTCAGTTTCCAGCTGAATCTGGTAG 259 |||||||| ||||| |||||| |||| ||| |||||||||||| ||||||||| || || Sbjct 61 ACATTCCGCAACTTTGTTTCACAAGA-TCCTCATTCTCAGTTTCTAGCTGAATCAGGAAG 119 Query 260 ATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAA 319 |||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||| Sbjct 120 ATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAA 179 Query 320 GATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAAC 379 |||||||||||||| || ||||| ||||||||||| || | | |||||||||||||| Sbjct 180 AATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAAC 239 Query 380 CAAAGAAACCGATGAACATATG-GGATGGGTCTTT-CCAGGTTCAGATACCGAAG-TTCC 436 ||| ||||| ||||| |||| | |||||||| ||| |||| ||| ||| ||| || | || Sbjct 240 CAAGGAAACTGATGATCATA-GAGGATGGGT-TTTCCCAGATTCGGATGCCG-AGCTCCC 296 Query 437 AGGAGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGC 496 |||||||| |||||| ||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 297 TGGAGCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGC 356 Query 497 TAGCCCAAACTA-CACCGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAAAA 555 |||||| ||||| | |||||||| ||||||||| ||||||||||||||||||| || | Sbjct 357 TAGCCCCAACTATGA-GGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGA 415 Query 556 CTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCATA 615 |||| |||||||| |||||| | || |||||||||||||||||||||||||||||| || Sbjct 416 CTGTAGTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTA 475 Query 616 TTGCGGGAAATCC-TGATCTTGATCTTTACCCTTCCCATCTCCA-AG-CTAAAATCGATG 672 ||||| ||| || | | || || ||||| ||||| |||||| | || | | ||||| | Sbjct 476 TTGCGAAAAACCCGTCA-CTCGACCTTTATCCTTCTCATCTC-AGAGAC-ACGATCGACG 532 Query 673 AAACTAATGAATGGATTTACAATGGGATAAATAATGGTGTCTATAGATGCGGGTTTGCAA 732 | ||||| |||||| ||| ||| |||||||| |||||||| |||| ||| || ||||| | Sbjct 533 AGACTAACGAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTA 592 Query 733 AGAAACAAGGACCTTATGAGGAGGCAGTGGAGCAAGTGTAT--GAAGCATTAGATAGATG 790 |||||||| ||| || | ||||||||| | || || ||| |||||| |||||||||| Sbjct 593 GGAAACAAGAACCCTACAATGAGGCAGTGAACCA-GT-TATACGAAGCAGTAGATAGATG 650 Query 791 TGAGGAGATTCTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAGATAT 850 |||||| || || ||||||| || |||||||| || |||||||| |||||| ||||||| Sbjct 651 TGAGGAAATACTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATAT 710 Query 851 CAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 886 | |||| || | ||| || ||||||||||| ||||| Sbjct 711 CCGATTATTCGCCACTCTCATAAGATTTGATGAGGT 746 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55992660150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5