BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19900.1

Length=1983
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890182 jgi|Araly1|890182|Al_scaffold_0007_2168                    597    1e-169
  Ahg890189 jgi|Araly1|890189|Al_scaffold_0007_2175                    226    5e-58 


> Ahg890182 jgi|Araly1|890182|Al_scaffold_0007_2168
Length=774

 Score =  597 bits (323),  Expect = 1e-169
 Identities = 357/374 (95%), Gaps = 0/374 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGAGGTCACGGCGTTCACGTTCCCGTCACGGTGCACAAGCTTGCGCCGTTATGTCT  60
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGTTGAGATCACGGCGTTCACGTTCCCGTCACGGCGCACAAGCTTGCGCCGTTATGTCT  60

Query  61   GCCGttcttcttctcgcttccgtctcacttctctacactcgtctctcactcttctcatct  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   GCCGTTCTTCTTCTCGCTTCCGTCTCTCTTCTCTACACTCGTCTCTCACTCTTCTCATCT  120

Query  121  cactcGCCGAATCACCTCCGCTCTGGCTCCAGCGAAGACACAGTTTTGTTCCCTGATTCT  180
            |||||||||| |||||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct  121  CACTCGCCGATTCACCTCCGCTCCGGCTCCAGCGAAGACGCTGTTTTGTTCCCGGATTCT  180

Query  181  GTCCTCGTCTCAGATTCCGACGTTGAAACCACCGGCGGAGGAGGAAGAGGATCCACTACC  240
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCCTCGTCTCAGATTCCGACGTTGAAACCACCGGCGGAGGAGGAAGAGGATCCACTACC  240

Query  241  TCAACCGAAGACAGAATCGACGAGCACGACGATGCGATCGAAGACGACGGCGTTTCGAAT  300
            |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct  241  TCAACCGAAGACAGAATCGACGAGCACGACGATGCGATTGAAGACGACGGCGGTTCTAAT  300

Query  301  GAGGAAGATGAGAATCAAGACGCAGAGCAAGAGCAAGAAGTGGATCTTAATCGGAACAAG  360
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GAGGAAGATGAGAATCAGGACGCAGAGCAAGAGCAAGAAGTGGATCTTAATCGGAACAAG  360

Query  361  GCTGCTTCATCTTC  374
            | || | | |||||
Sbjct  361  GGTGGTGCTTCTTC  374


 Score =  239 bits (129),  Expect = 7e-62
 Identities = 138/142 (97%), Gaps = 2/142 (1%)
 Strand=Plus/Plus

Query  1750  TATTTTGCATACCCTGCAATAGAAGATGAG-AGATCGCAGCAAGACGAATCGTTCAAGAA  1808
             |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  544   TATTTTGCATACCCTGCAATAGAAGATGAGAAG-TCGCAGCAAGACGAATCGTTCAAGAA  602

Query  1809  GATACTCAATGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC  1868
             ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603   GATCCTCAACGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC  662

Query  1869  TGAACCTGAGAGCCTTGTGGCT  1890
             ||||||||||||||||||||||
Sbjct  663   TGAACCTGAGAGCCTTGTGGCT  684


 Score =  135 bits (73),  Expect = 9e-31
 Identities = 100/113 (88%), Gaps = 2/113 (2%)
 Strand=Plus/Plus

Query  894   TGGTGAGATCAAGAGAGGTGAACGTAAGACATTAGACAATGATGAGAAAATTGAGAGAGA  953
             ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct  432   TGGTGAGATCAAGAGAGGTGAACGTAAGACATTAGACGATGATAAGAAAATCGAGAG-GA  490

Query  954   -GGAACAGAAGAATGTGGAATCTGAGAGGAAGCATGATGAGGTTACAGAACAT  1005
              |||||||| ||||    ||| |||| |||||| |||||||||||||||||||
Sbjct  491   AGGAACAGACGAATACAAAATTTGAGGGGAAGCTTGATGAGGTTACAGAACAT  543


> Ahg890189 jgi|Araly1|890189|Al_scaffold_0007_2175
Length=2175

 Score =  226 bits (122),  Expect = 5e-58
 Identities = 136/143 (95%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  1749  CTATTTTGCATACCCTGCAATAGAAGATGAGAGATCGCAGCAAGACGAATCGTTCAAGAA  1808
             ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  12    CTATTATGCATACCCTGCAATAGAAGATGAGAAATCACAGCAAGACGAATCGTTCAAGAA  71

Query  1809  GATACTCAATGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC  1868
             ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  72    GATCCTCAACGAGTCCTTAACGTTCCATTTCTGGAACAGCATAACTTCCTCACTGATCCC  131

Query  1869  TGAACCTGAGAGCCTTGTGGCTA  1891
             |||| ||||||||||||||||||
Sbjct  132   TGAATCTGAGAGCCTTGTGGCTA  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74542609465


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5