BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19905.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329573 jgi|Araly1|329573|fgenesh1_pm.C_scaffold_7001800           313    4e-85
  Ahg946181 jgi|Araly1|946181|scaffold_702410.1                       89.8    8e-18


> Ahg329573 jgi|Araly1|329573|fgenesh1_pm.C_scaffold_7001800
Length=228

 Score =  313 bits (169),  Expect = 4e-85
 Identities = 212/232 (91%), Gaps = 5/232 (2%)
 Strand=Plus/Plus

Query  1    ATGGCAAAACTACTGTGTTCTTATCTGTTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  60
            |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAAACTACTTTGTTCGTATCTATTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  60

Query  61   GTATTTTCAAGTGCAAAGCAGTTAAAAACATGTACCTCGGTCATAAAACTTGGCCACCCA  120
            |  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCTCTTCAAGTGCAAAGAAGTTAAAAACATGTACCTCGGTCATAAAACTTGGCCACCCA  120

Query  121  TGTGATATTGAATCATGCCTAAACGAGTGTTTTCGAGTTTACAATACCGGATTTGCAACT  180
            || ||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct  121  TGCGATGTTGAATCATGCATAAATGAGTGTTTTCGAGTTTACAATACTGGATTTGCAACT  180

Query  181  TGTCGCGGAGACAA-GTACTCACAACTTTGTACTTGTGAGTACAATTGCTAA  231
            ||||| |||||||| |||   | || |||| |||||||||||||||||||||
Sbjct  181  TGTCGTGGAGACAAAGTA---A-AAGTTTGCACTTGTGAGTACAATTGCTAA  228


> Ahg946181 jgi|Araly1|946181|scaffold_702410.1
Length=286

 Score = 89.8 bits (48),  Expect = 8e-18
 Identities = 67/76 (88%), Gaps = 2/76 (3%)
 Strand=Plus/Plus

Query  1   ATGGCAAAACTACTGTGTTCTTATCTGTTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  60
           ||||| |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  23  ATGGCCAAACTACTCTTTTCGTATCTATTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  82

Query  61  GTATT-TTCAAGTGCA  75
           |  || ||| ||||||
Sbjct  83  GC-TTCTTCGAGTGCA  97



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5