BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19910.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492880 jgi|Araly1|492880|fgenesh2_kg.7__2313__AT4G19910.1 1040 0.0
> Ahg492880 jgi|Araly1|492880|fgenesh2_kg.7__2313__AT4G19910.1
Length=726
Score = 1040 bits (563), Expect = 0.0
Identities = 674/728 (93%), Gaps = 5/728 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATACAAGCACGTCCTCTAGTGTTTATCAATCATGGTGAAAGCGATCAGAGCGAC 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCGATACAAGCACGTCCTCTAGTGTTTATCAATCATGGTGAAAACGATCTCAGCGAC 60
Query 61 GGATTCATTAGGCATGTGGAAAGAGCCTTAAATGACGAAGGGTTTAACGTTTTCATAGAT 120
||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 GGATTCATTAGGCATCTGGCAAGTGCCTTAAGGGACGAAGGGTTTAACGTTTTCATAGAT 120
Query 121 AGTGACGAGCGAAGAGGAAGAGGCATGGAACACATTTTCAGAGCGATCGATAACTCAAAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AGTGACGAGCGAAGAGGAAGAGGCATGGAACACATTTTCAGAGCGATCGACAACTCAAAG 180
Query 181 GTCGCATTAGTGATTTTCTCTGACCGGTACACAGCGTCAGAGTTGTGTTTGCACGAAGCG 240
|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGCACTAGTGATCTTCTCTGACAGGTACACAGCGTCAGAGTTGTGTTTGCACGAAGCG 240
Query 241 GTGAGGATCTATGATCGACGTAGGGAAGGAAAACTCGTGTTGATCCCTGTCTTCTATAGG 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 241 GTGAGGATCTATGATCGACGTAGGGAAGGCAAACTCGTGTTGATTCCTGTCTTCTATAGG 300
Query 301 GTTTCAGAA-GACGACGTGAATATGTTCAATGGTAGATTTGGAGAGAGTTTTTTGGAAAC 359
|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GTTTCA-ACCGACGACGTGAATATGTTCAATGGTAGATTTGGGGAGAGTTTTTTGGAAAC 359
Query 360 GTTGACGATTCAGGGCTTCAGGGATCATCCATTTGCCGAGCATTGGATGAGAAATGTGAA 419
||||| |||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 360 GTTGAAGATTCAGGGCATAAGTGATCATCCATTTGCTGAGCATTGGATGAGAAATGTGAA 419
Query 420 TTTTATCTGCACAGATACTGGTTTCACCTCAGCAGATTACAGCAGCAATGATACTTCTCT 479
||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| ||
Sbjct 420 TTTTATCTGCACAGACACTGGTTACATCTCAGAAGATTACAGCAGCAATGATACTTCCCT 479
Query 480 TGTGGAGGAGATTGTAAGGGCTATTAAGAGACGTCTACAGGGCAAGAAACTTCCGAGACG 539
||||| ||||||||| |||| ||||||||||||| |||| ||||| ||||| ||||||||
Sbjct 480 TGTGGTGGAGATTGTTAGGGGTATTAAGAGACGTTTACAAGGCAAAAAACTACCGAGACG 539
Query 540 TGTGCAAGATGAAAAACTACCTAGCCCTTT-AGACATGTTCATGCCAAAACAACCGAATG 598
||||||||||||||| ||||||||| ||| | | ||||||||||||||||||||||||
Sbjct 540 TGTGCAAGATGAAAATCTACCTAGCATTTTCAAA-ATGTTCATGCCAAAACAACCGAATA 598
Query 599 CTCAAGAGGGGTTTGGAAAAGAGTTGCTTTATGTTGCTATTGCTGCTTTGCTCTGCTATT 658
| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 599 CACAAGAAGGATTTGGAAAAGAGTTGCTTTATGTTGCTATTCCTGCTTTGCTCTGTTATT 658
Query 659 TCATTATCCCTTTTGTTTTCACAGATT-GGATGTCTTCAGTATCCTTCAGTGGCTCGTTG 717
||||| ||||||| |||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 659 TCATTCTCCCTTTGGTTTTCACTGATTTGGATGTCTTCAGTATCCGTCAGTTGCTCGTTG 718
Query 718 CTGTTCTG 725
||||||||
Sbjct 719 CTGTTCTG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5