BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19940.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946177 jgi|Araly1|946177|scaffold_702406.1 636 0.0
> Ahg946177 jgi|Araly1|946177|scaffold_702406.1
Length=1328
Score = 636 bits (344), Expect = 0.0
Identities = 836/1063 (79%), Gaps = 75/1063 (7%)
Strand=Plus/Plus
Query 48 AAGAACGAAGAGGAGACGAAGAGACTTGTGCAAGAGCCGCCAACCGATACCGGAGATACC 107
||||| ||||| |||| ||||||| | |||||||||| | ||||| | |||||||| ||
Sbjct 95 AAGAA-GAAGA--AGACAAAGAGACATATGCAAGAGCCACGAACCGGTGCCGGAGATTCC 151
Query 108 TTTCGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 167
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TTTTGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 211
Query 168 ATCCGTCTCAAAGCTCTGGTCATC-CTTGATTTGTTCGCGA-AACTTT-ACCAACCGCCT 224
|||||||||||||||||||||| | ||||||||||| | | |||||| ||||||| |
Sbjct 212 ATCCGTCTCAAAGCTCTGGTCA-CTTTTGATTTGTTC-C-AGAACTTTCACCAACCTTTT 268
Query 225 GC-TAAAGCTGTC--C-TCCCCACCGCGTTTATTTATGTGTTTGAGCTCCTCCGACAACA 280
| |||| | || | || ||||||||| ||| ||||| ||| | | | |||||||
Sbjct 269 CCAAAAAG-TTTCATCATCACCACCGCGTCTATACATGTGGTTG-G-ACGT-AGACAACA 324
Query 281 GCCACCTCAAAACTGTACTACTATCATTGTCTTCTCCTCCTGACTCGGACATTACAATGT 340
| | | | ||||| | | | | | |||||||||| |||||||| || |||
Sbjct 325 GGAATGT-ATTACTGT-C-A--A-CGTCGTCTTCTCCTGATGACTCGG-----AC-GTGT 372
Query 341 CTTCCAGTGTAATTGATCAAGATTTGACCATGCC-GGGTATGAAAGGCTACCAGATCTCT 399
||||| ||||||||| ||||| |||||||| || | || ||||||||| | |||||
Sbjct 373 CTTCCTTTGTAATTGACCAAGAATTGACCATCCCACCGAAT-AAAGGCTACTACCTCTCT 431
Query 400 CACGTTTTTCGCGGCTTGATGTGCTTGGTaaaaaaaTCAAGTGCCCAA-ATATACAATAC 458
||||||||| | ||||| ||||| || ||||| | ||||| | | || |||||||| ||
Sbjct 432 CACGTTTTTGGTGGCTTAATGTGTTTCGTAAATGAGTCAAG-GGCAAAGATATACAACAC 490
Query 459 CACGACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCACCATCTTAGCTGAAGA 518
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 491 TACCACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCAATATGATAGCTGAAGA 550
Query 519 ACACAAG-AGTAAGAAGATCATGTACCATATCGGACACGATCCCGTTTATGATCAATATA 577
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 551 CCACAAGTA-TAAGAAGATCATGTACCATATCGGACACGATCCCGTTCATGATCAATATA 609
Query 578 AAGTGGTTTGCATAGTTTCTAGAGCTAGTGACGAAGT-TGAAGAGTACACGTTCCTGTCA 636
||||||||||||| ||||| ||| | || |||||| | || |||| || ||| |||||||
Sbjct 610 AAGTGGTTTGCATTGTTTCAAGACCCAGCGACGAA-TATGGAGAGCACTCGTACCTGTCA 668
Query 637 GAGCATTGGGTCTTGCTACTAGAAGGAGAGGGATC-ACGTAGATGGAGAAAAATATC-AT 694
||||||||| |||||||||||| |||||| |||| | | |||||||||| || || |
Sbjct 669 GAGCATTGGATCTTGCTACTAGGAGGAGATAGATCTAA-TCGATGGAGAAAGAT-TCCAA 726
Query 695 GCAAATATCCA-CCACATGTTCCTTTAGGACAAGGATTGACTCTCAGTGGTCGTATGCAT 753
|| | ||| |||||||||||| || ||||| ||||| | ||||||| |||||||||
Sbjct 727 GCCGTTG-CCAACCACATGTTCCTGTAACACAAGTATTGAATATCAGTGGGCGTATGCAT 785
Query 754 TACCTCGCTTGGGT-GCG-TGTGTCGGATAACCGTGTGCTTGTGATTTTCGATACTCATT 811
|||||||||||||| | | | | || || | ||||||||| | |||||||| | |||
Sbjct 786 TACCTCGCTTGGGTAG-GAT-T-TCTT-TATTC-TGTGCTTGTCAGTTTCGATATTAATT 840
Query 812 CTGAAGAATTTAGTATGCTCCAAGTACCTGGAGATATC--TTTTGGA---AATATAA-TG 865
|||||||| | ||||| || || ||||| ||| | | |||| || || | ||
Sbjct 841 CTGAAGAAATCAGTATTCTTGAACTACCTAAAGAAAACGATTTTTTTCCTAAGATGACTG 900
Query 866 GTCTTCTAGAATACGGTGGGAAAA-TAGCTATTTTAAACTATACCAAAGTTGATAT-CGA 923
|||| | ||||||||| | || | ||||| ||||| || ||| | || | | | |
Sbjct 901 ATCTTATTGAATACGGTAG-AAGAGTAGCTCTTTTACACCATATTGATCTTAAAAGGC-A 958
Query 924 AGGTGTGATGGAA-CTATGGGTTGTGGAAGATG-AAGAGAAGAATCTTTGGA-GCAGTAA 980
||||||| || || |||||||| ||||||||| || |||||||| | ||| | |||||
Sbjct 959 AGGTGTGTTG-AATCTATGGGTCGTGGAAGATTCAA-AGAAGAATATGTGGTCG-AGTAA 1015
Query 981 GA-TATTGGTGGT-CAATCCTT-TGCAACTGCAGATGGTCAATAGCATTATTAGTTTGAC 1037
|| | |||||| | || ||||| | ||| |||| | ||||||||||| ||||||
Sbjct 1016 GACT-TTGGTGTTGCA-TCCTTCT-CAAATGCATCTAGTCAATAGCATCG---GTTTGAA 1069
Query 1038 GGTACTAGGAACAACTCGAAACGGCGAAGTTATCTTGGTACCT 1080
||||| ||| |||||| ||||||| || ||| |||||||||||
Sbjct 1070 GGTACAAGGTACAACTAGAAACGGTGAGGTTGTCTTGGTACCT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5