BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19940.1 Length=1338 Score E Sequences producing significant alignments: (Bits) Value Ahg946177 jgi|Araly1|946177|scaffold_702406.1 636 0.0 > Ahg946177 jgi|Araly1|946177|scaffold_702406.1 Length=1328 Score = 636 bits (344), Expect = 0.0 Identities = 836/1063 (79%), Gaps = 75/1063 (7%) Strand=Plus/Plus Query 48 AAGAACGAAGAGGAGACGAAGAGACTTGTGCAAGAGCCGCCAACCGATACCGGAGATACC 107 ||||| ||||| |||| ||||||| | |||||||||| | ||||| | |||||||| || Sbjct 95 AAGAA-GAAGA--AGACAAAGAGACATATGCAAGAGCCACGAACCGGTGCCGGAGATTCC 151 Query 108 TTTCGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 167 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TTTTGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 211 Query 168 ATCCGTCTCAAAGCTCTGGTCATC-CTTGATTTGTTCGCGA-AACTTT-ACCAACCGCCT 224 |||||||||||||||||||||| | ||||||||||| | | |||||| ||||||| | Sbjct 212 ATCCGTCTCAAAGCTCTGGTCA-CTTTTGATTTGTTC-C-AGAACTTTCACCAACCTTTT 268 Query 225 GC-TAAAGCTGTC--C-TCCCCACCGCGTTTATTTATGTGTTTGAGCTCCTCCGACAACA 280 | |||| | || | || ||||||||| ||| ||||| ||| | | | ||||||| Sbjct 269 CCAAAAAG-TTTCATCATCACCACCGCGTCTATACATGTGGTTG-G-ACGT-AGACAACA 324 Query 281 GCCACCTCAAAACTGTACTACTATCATTGTCTTCTCCTCCTGACTCGGACATTACAATGT 340 | | | | ||||| | | | | | |||||||||| |||||||| || ||| Sbjct 325 GGAATGT-ATTACTGT-C-A--A-CGTCGTCTTCTCCTGATGACTCGG-----AC-GTGT 372 Query 341 CTTCCAGTGTAATTGATCAAGATTTGACCATGCC-GGGTATGAAAGGCTACCAGATCTCT 399 ||||| ||||||||| ||||| |||||||| || | || ||||||||| | ||||| Sbjct 373 CTTCCTTTGTAATTGACCAAGAATTGACCATCCCACCGAAT-AAAGGCTACTACCTCTCT 431 Query 400 CACGTTTTTCGCGGCTTGATGTGCTTGGTaaaaaaaTCAAGTGCCCAA-ATATACAATAC 458 ||||||||| | ||||| ||||| || ||||| | ||||| | | || |||||||| || Sbjct 432 CACGTTTTTGGTGGCTTAATGTGTTTCGTAAATGAGTCAAG-GGCAAAGATATACAACAC 490 Query 459 CACGACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCACCATCTTAGCTGAAGA 518 || |||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 491 TACCACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCAATATGATAGCTGAAGA 550 Query 519 ACACAAG-AGTAAGAAGATCATGTACCATATCGGACACGATCCCGTTTATGATCAATATA 577 |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 551 CCACAAGTA-TAAGAAGATCATGTACCATATCGGACACGATCCCGTTCATGATCAATATA 609 Query 578 AAGTGGTTTGCATAGTTTCTAGAGCTAGTGACGAAGT-TGAAGAGTACACGTTCCTGTCA 636 ||||||||||||| ||||| ||| | || |||||| | || |||| || ||| ||||||| Sbjct 610 AAGTGGTTTGCATTGTTTCAAGACCCAGCGACGAA-TATGGAGAGCACTCGTACCTGTCA 668 Query 637 GAGCATTGGGTCTTGCTACTAGAAGGAGAGGGATC-ACGTAGATGGAGAAAAATATC-AT 694 ||||||||| |||||||||||| |||||| |||| | | |||||||||| || || | Sbjct 669 GAGCATTGGATCTTGCTACTAGGAGGAGATAGATCTAA-TCGATGGAGAAAGAT-TCCAA 726 Query 695 GCAAATATCCA-CCACATGTTCCTTTAGGACAAGGATTGACTCTCAGTGGTCGTATGCAT 753 || | ||| |||||||||||| || ||||| ||||| | ||||||| ||||||||| Sbjct 727 GCCGTTG-CCAACCACATGTTCCTGTAACACAAGTATTGAATATCAGTGGGCGTATGCAT 785 Query 754 TACCTCGCTTGGGT-GCG-TGTGTCGGATAACCGTGTGCTTGTGATTTTCGATACTCATT 811 |||||||||||||| | | | | || || | ||||||||| | |||||||| | ||| Sbjct 786 TACCTCGCTTGGGTAG-GAT-T-TCTT-TATTC-TGTGCTTGTCAGTTTCGATATTAATT 840 Query 812 CTGAAGAATTTAGTATGCTCCAAGTACCTGGAGATATC--TTTTGGA---AATATAA-TG 865 |||||||| | ||||| || || ||||| ||| | | |||| || || | || Sbjct 841 CTGAAGAAATCAGTATTCTTGAACTACCTAAAGAAAACGATTTTTTTCCTAAGATGACTG 900 Query 866 GTCTTCTAGAATACGGTGGGAAAA-TAGCTATTTTAAACTATACCAAAGTTGATAT-CGA 923 |||| | ||||||||| | || | ||||| ||||| || ||| | || | | | | Sbjct 901 ATCTTATTGAATACGGTAG-AAGAGTAGCTCTTTTACACCATATTGATCTTAAAAGGC-A 958 Query 924 AGGTGTGATGGAA-CTATGGGTTGTGGAAGATG-AAGAGAAGAATCTTTGGA-GCAGTAA 980 ||||||| || || |||||||| ||||||||| || |||||||| | ||| | ||||| Sbjct 959 AGGTGTGTTG-AATCTATGGGTCGTGGAAGATTCAA-AGAAGAATATGTGGTCG-AGTAA 1015 Query 981 GA-TATTGGTGGT-CAATCCTT-TGCAACTGCAGATGGTCAATAGCATTATTAGTTTGAC 1037 || | |||||| | || ||||| | ||| |||| | ||||||||||| |||||| Sbjct 1016 GACT-TTGGTGTTGCA-TCCTTCT-CAAATGCATCTAGTCAATAGCATCG---GTTTGAA 1069 Query 1038 GGTACTAGGAACAACTCGAAACGGCGAAGTTATCTTGGTACCT 1080 ||||| ||| |||||| ||||||| || ||| ||||||||||| Sbjct 1070 GGTACAAGGTACAACTAGAAACGGTGAGGTTGTCTTGGTACCT 1112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50055390021 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5