BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19950.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948591 jgi|Araly1|948591|scaffold_800478.1 941 0.0
Ahg948595 jgi|Araly1|948595|scaffold_800482.1 929 0.0
Ahg329571 jgi|Araly1|329571|fgenesh1_pm.C_scaffold_7001798 697 0.0
> Ahg948591 jgi|Araly1|948591|scaffold_800478.1
Length=1010
Score = 941 bits (509), Expect = 0.0
Identities = 830/981 (85%), Gaps = 38/981 (4%)
Strand=Plus/Plus
Query 98 GCCATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACA-AAAGAGGAATTCTACGTGA 156
||||||||||| || |||| ||||||||||||||||||| | ||| || ||||||||
Sbjct 18 GCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA-AGGTATACTACGTGA 76
Query 157 ATCAACATCAAT-CCCACAATATTCTCTAAAAACCTTTTACCTCATAACCCTAACCCTAA 215
||| ||| |||| |||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 77 ATCCACAACAATCCCCA-AATTTTCCCCAAAAACCTTTTACCTCATAACCCTAACCCTAA 135
Query 216 TTTTCCCTCTCTCCTTCGCAATCCTAGCCCATTCTCTCTTCACACAACCAATCTTAGCTC 275
|||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 136 TTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCAACCAATCTTAGCTC 195
Query 276 AGATCGATACATAC-CCACAAGCCGATCAATCTCAACTCCAA-CATGAATGGACCGTCCT 333
|| | ||| || || || | | ||||||||| || |||| |||||||||||| | ||
Sbjct 196 AGCTTGATTCA-ACTCCTCCTTCAGATCAATCTAAAA-CCAATCATGAATGGACCCTTCT 253
Query 334 CCTCGTTT-TCCAATTC-TGCTACATCATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 391
|| |||| || ||||| | ||| | |||||||||||||||||||||||||||||||||
Sbjct 254 TCTTGTTTATC-AATTCAT-CTATGTTATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 311
Query 392 GCCGCCGTTGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCCTCC 451
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 312 GCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCTGTTTCTTTCTCTTCC 371
Query 452 ACAATGTCAGCGATACCTCTCGTCCTCAAAAGATTGTTCATAACATTCCTCTGGGTCTCT 511
|||||||||||||| ||||| || | || | |||||||| || ||||| ||||| | |
Sbjct 372 ACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCTTTGGGT-T-T 429
Query 512 CTTT--TGATGCTTGCGTACAACACCGTGTTCTTGATCTT-CTTGGTCACGTTAATCGTA 568
|||| ||||||||| ||||||| | || |||||| | || |||| | || ||||||
Sbjct 430 CTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTT-TTGATCGTA 488
Query 569 GCTGTTGATTTACAGAA-CGTGGTTTTAGCTGTGTTT-TCGTTGGTAGTGATCTTTGTTC 626
||| | |||||||| || |||| || | ||||| ||| ||| |||| |||||||||||||
Sbjct 489 GCTATCGATTTACA-AAGCGTGATTCTCGCTGT-TTTCTCGATGGTTGTGATCTTTGTTC 546
Query 627 TGTTTCTTG--TAGTTCATGTTTATATGACAGCTTTGTGGCATTTAGCTAGTGTAGTCTC 684
||||| ||| | ||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 547 TGTTT-TTGGGT-GTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTGTCTC 604
Query 685 TGTTCTTGAACCGATTTACGGT-TTGGCTGCGATGAAGAAGAGTTATGAGTTGCTTAAAG 743
||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 605 TGTTCTTGAACCGATTTACGGGATTGCC-GCGATGAAGAAGAGTTATGAGTTGCTTAAAG 663
Query 744 GGAAGA-CTCTTATGGCTTGTTCGATGGTTTTCATCTATCTTGTTCATTGTGGATTCATT 802
||| || || |||||| |||||||||||||| || ||||||| || ||||||| ||| |
Sbjct 664 GGA-GAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCACT 722
Query 803 GCTGGAGTTTTTGGAGCAGTGGTGGTTCGTGGTGGTGATGATTACGGAAT-TTT-CGCTA 860
||||| ||||| || | || ||||||| ||| |||||||||| ||| | ||| || |
Sbjct 723 GCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA-A 781
Query 861 GAATCGTCGCTGGTGGATTCTTGGTTGGTG-TTCTTGTGATAGTGAATCTAATTGGACTG 919
|| | || | |||||| ||||||||||| | |||| ||||| ||||||||| | || ||
Sbjct 782 GATT-GTTGTTGGTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTGGGGTTG 839
Query 920 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAGATTGATAAA 979
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 840 CTTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAA 899
Query 980 TCCGCTTTGCACGATCATCTCGGTGGGTATCTCGGTGAATATGTGCCTCTTAA-GAGCAA 1038
||||| |||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||
Sbjct 900 TCCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCT-TTAAAGAGCAG 958
Query 1039 CATTCAAATGGAGAACTTTGA 1059
|||||| ||||||||||||||
Sbjct 959 CATTCAGATGGAGAACTTTGA 979
> Ahg948595 jgi|Araly1|948595|scaffold_800482.1
Length=1010
Score = 929 bits (503), Expect = 0.0
Identities = 828/981 (84%), Gaps = 38/981 (4%)
Strand=Plus/Plus
Query 98 GCCATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACA-AAAGAGGAATTCTACGTGA 156
||||||||||| || |||| ||||||||||||||||||| | ||| || ||||||||
Sbjct 18 GCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA-AGGTATACTACGTGA 76
Query 157 ATCAACATCAAT-CCCACAATATTCTCTAAAAACCTTTTACCTCATAACCCTAACCCTAA 215
||| ||| |||| |||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 77 ATCCACAACAATCCCCA-AATTTTCCCCAAAAACCTTTTACCTCATAACCCTAACCCTAA 135
Query 216 TTTTCCCTCTCTCCTTCGCAATCCTAGCCCATTCTCTCTTCACACAACCAATCTTAGCTC 275
|||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 136 TTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCAACCAATCTTAGCTC 195
Query 276 AGATCGATACATAC-CCACAAGCCGATCAATCTCAACTCCAA-CATGAATGGACCGTCCT 333
|| | ||| || || || | | ||||||||| || |||| || ||||||||| | ||
Sbjct 196 AGCTTGATTCA-ACTCCTCCTTCAGATCAATCTAAAA-CCAATCACGAATGGACCCTTCT 253
Query 334 CCTCGTTT-TCCAATTC-TGCTACATCATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 391
|| |||| || ||||| | ||| | |||||||||||||||||||||||||||||||||
Sbjct 254 TCTTGTTTATC-AATTCAT-CTATGTTATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACA 311
Query 392 GCCGCCGTTGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCCTCC 451
|||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 312 GCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTCTTTCTCTTCC 371
Query 452 ACAATGTCAGCGATACCTCTCGTCCTCAAAAGATTGTTCATAACATTCCTCTGGGTCTCT 511
|||||||||||||| ||||| || | || | |||||||| || ||||| ||||| | |
Sbjct 372 ACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCTTTGGGT-T-T 429
Query 512 CTTT--TGATGCTTGCGTACAACACCGTGTTCTTGATCTT-CTTGGTCACGTTAATCGTA 568
|||| ||||||||| ||||||| | || |||||| | || |||| | || ||||||
Sbjct 430 CTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTT-TTGATCGTA 488
Query 569 GCTGTTGATTTACAGAA-CGTGGTTTTAGCTGTGTTT-TCGTTGGTAGTGATCTTTGTTC 626
||| | |||||||| || |||| || | ||||| ||| ||| |||| |||||||||||||
Sbjct 489 GCTATCGATTTACA-AAGCGTGATTCTCGCTGT-TTTCTCGATGGTTGTGATCTTTGTTC 546
Query 627 TGTTTCTTG--TAGTTCATGTTTATATGACAGCTTTGTGGCATTTAGCTAGTGTAGTCTC 684
||||| ||| | ||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 547 TGTTT-TTGGGT-GTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTGTCTC 604
Query 685 TGTTCTTGAACCGATTTACGGT-TTGGCTGCGATGAAGAAGAGTTATGAGTTGCTTAAAG 743
||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 605 TGTTCTTGAACCGATTTACGGGATTGCC-GCGATGAAGAAGAGTTATGAGTTGCTTAAAG 663
Query 744 GGAAGA-CTCTTATGGCTTGTTCGATGGTTTTCATCTATCTTGTTCATTGTGGATTCATT 802
||| || || |||||| |||||||||||||| || ||||||| || ||||||| ||| |
Sbjct 664 GGA-GAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCACT 722
Query 803 GCTGGAGTTTTTGGAGCAGTGGTGGTTCGTGGTGGTGATGATTACGGAAT-TTT-CGCTA 860
||||| ||||| || | || ||||||| ||| |||||||||| ||| | ||| || |
Sbjct 723 GCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA-A 781
Query 861 GAATCGTCGCTGGTGGATTCTTGGTTGGTG-TTCTTGTGATAGTGAATCTAATTGGACTG 919
|| | || | |||||| ||||||||||| | |||| ||||| ||||||||| | || ||
Sbjct 782 GATT-GTTGTTGGTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTGGGGTTG 839
Query 920 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAGATTGATAAA 979
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 840 CTTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAA 899
Query 980 TCCGCTTTGCACGATCATCTCGGTGGGTATCTCGGTGAATATGTGCCTCTTAA-GAGCAA 1038
||||| |||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||
Sbjct 900 TCCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCT-TTAAAGAGCAG 958
Query 1039 CATTCAAATGGAGAACTTTGA 1059
|||||| ||||||||||||||
Sbjct 959 CATTCAGATGGAGAACTTTGA 979
> Ahg329571 jgi|Araly1|329571|fgenesh1_pm.C_scaffold_7001798
Length=675
Score = 697 bits (377), Expect = 0.0
Identities = 430/456 (94%), Gaps = 2/456 (0%)
Strand=Plus/Plus
Query 101 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACAAAAGAGGAATTCTACGTGAATCA 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACAAAAGAGGAATTCTACGTGAATCA 60
Query 161 ACATCAATCCCACAATATTCTCTAAAAACCTTTTACCTCATAACCCTAACCCTAATTTTC 220
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 ACATCAATCCCACAATATTCTCCCAAAACCTTTTACCTCATAACCCTAACCCTAATTTTC 120
Query 221 CCTCTCTCCTTCGCAATCCTAGCCCATTCTCTCTTCACACAACCAATCTTAGCTCAGATC 280
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCTCTCCTTCGCAATCCTAGCACATTCTCTCTTCACACAACCAATCTTAGCTCAGATC 180
Query 281 GATACATACCCACAAGCCGATCAATCTCAACTCCAA-CATGAATGGACCGTCCTCCTCGT 339
||||| ||||||||| |||||||| ||||| |||| |||||||||||| |||||||| |
Sbjct 181 GATACTTACCCACAAACCGATCAAGCTCAAA-CCAAACATGAATGGACCATCCTCCTCCT 239
Query 340 TTTCCAATTCTGCTACATCATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACAGCCGCCGT 399
|||||||||| ||||| | |||||||| || ||||||||||||||||| || ||||| ||
Sbjct 240 TTTCCAATTCAGCTACTTGATCTTCCTTTTTGCCTTCTCTCTTCTCTCAACCGCCGCTGT 299
Query 400 TGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCCTCCACAATGTC 459
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 300 TGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCAGTTTCTTTCTCATCAACAATGTC 359
Query 460 AGCGATACCTCTCGTCCTCAAAAGATTGTTCATAACATTCCTCTGGGTCTCTCTTTTGAT 519
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 360 AGCGATACCTCTCGTCCTCAAAAGATTGTTCATCACTTTCCTCTGGGTCTCTCTCTTGAT 419
Query 520 GCTTGCGTACAACACCGTGTTCTTGATCTTCTTGGT 555
||||||||||||||||||||||||||| ||||||||
Sbjct 420 GCTTGCGTACAACACCGTGTTCTTGATATTCTTGGT 455
Score = 344 bits (186), Expect = 8e-94
Identities = 201/208 (97%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 860 AGAATCGTCGCTGGTGGATTCTTGGTTGGTGTTCTTGTGATAGTGAATCTAATTGGACTG 919
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 469 AGAATAGTCGCTGGTGGATTCTTGGTTGGTGTTCTTGTGATAGTGAATCTAATTGGATTG 528
Query 920 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAGATTGATAAA 979
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 529 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGACATTGATAAA 588
Query 980 TCCGCTTTGCACGATCATCTCGGTGGGTATCTCGGTGAATATGTGCCTCTTAAGAGCAAC 1039
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 589 TCCGCTTTGCACGATCATCTCGGTGGGTATCTTGGTGAATACGTGCCTCTTAAGAGCAAC 648
Query 1040 ATTCAAATGGAGAACTTTGA-AGTTTGA 1066
|||||||||||||||||||| | |||||
Sbjct 649 ATTCAAATGGAGAACTTTGAGA-TTTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5