BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19980.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492877 jgi|Araly1|492877|fgenesh2_kg.7__2310__AT4G19980.1         457    3e-128


> Ahg492877 jgi|Araly1|492877|fgenesh2_kg.7__2310__AT4G19980.1
Length=378

 Score =  457 bits (247),  Expect = 3e-128
 Identities = 338/381 (89%), Gaps = 10/381 (3%)
 Strand=Plus/Plus

Query  6    ATTTTCCCGGCATATACACGGCGGCAAGGCTA-CCACCGCAACCGCCGTGACAAAGAAGT  64
            ||||||||||||||||| || || |||| | | |||||||||||||  ||||||||||||
Sbjct  6    ATTTTCCCGGCATATACGCGACGCCAAGAC-AGCCACCGCAACCGCAATGACAAAGAAGT  64

Query  65   CCAATGTCCCAACTCCGA-CGCCAAACTGCTGCGTCACGTGCCTTGCAAGACTCATCAGA  123
            || ||||||||||| | | |||||||||||||||||||||||||||  ||||||||||||
Sbjct  65   CCGATGTCCCAACTAC-ATCGCCAAACTGCTGCGTCACGTGCCTTGTGAGACTCATCAGA  123

Query  124  AAACTGAAGAAAAAAGGGAGGTTGTTGCTGGCTACGTCGACGGCTCGGAGACAAGGGAGC  183
            |||||||||| ||||||||||||||||||||||||||   |||||||||||||||| |||
Sbjct  124  AAACTGAAGAGAAAAGGGAGGTTGTTGCTGGCTACGT---CGGCTCGGAGACAAGGAAGC  180

Query  184  TCTTTGCAATGCCGGTACGATCCAATGAGCTATTCACTCAACTTCGACGGAGGGGCGTGT  243
            || || || ||||| ||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct  181  TCGTTCCAGTGCCGTTACGATCCACTGAGCTATTCACTTAACTTCGACGGAGGCGCGTGT  240

Query  244  GGTACACTTCCTGATGATGAGGACTACTACTTGCGGTTTTATGCTTTTTCTTCAAGATAC  303
            ||||||||||| ||||||||||| || ||| ||||| ||||||| |||||||| ||||||
Sbjct  241  GGTACACTTCCCGATGATGAGGATTATTACCTGCGGCTTTATGCGTTTTCTTCGAGATAC  300

Query  304  GTTACGACTACTAACAATATCAGGAAGAGACCACCACTTCCTCGTGAATCCTTCTCTAGC  363
            |||   |||||||| | ||||| ||||||||||||||||||||||||||||||||||  |
Sbjct  301  GTT---ACTACTAATACTATCAAGAAGAGACCACCACTTCCTCGTGAATCCTTCTCTTCC  357

Query  364  GCTTCACATGAATTCATGTAA  384
            ||||| ||||||||| |||||
Sbjct  358  GCTTCGCATGAATTCGTGTAA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5