BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19985.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492876 jgi|Araly1|492876|fgenesh2_kg.7__2309__AT4G19985.1 1483 0.0
> Ahg492876 jgi|Araly1|492876|fgenesh2_kg.7__2309__AT4G19985.1
Length=997
Score = 1483 bits (803), Expect = 0.0
Identities = 938/1003 (94%), Gaps = 9/1003 (1%)
Strand=Plus/Plus
Query 12 TTAGAAGCAAAAATGGTTGATTTTCTTCGAGAAATTTGACAGAACTTTCCCCAGATGGTG 71
|||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1 TTAGAAGCAAAAGTGGTTGATTTTCACCGAGAAATTTGACAGAAGTTTCCTCAGATGGTG 60
Query 72 CATTATTGTGTGACCAAGATTGCTTAAGGAAATGGGTTTGGTGGGTTGTGTTGGTAAGTC 131
||||||||||||| ||||||||||||| ||||||| ||||| || |||||||||||| ||
Sbjct 61 CATTATTGTGTGATCAAGATTGCTTAAAGAAATGGTTTTGGCGGTTTGTGTTGGTAATTC 120
Query 132 TTCTCTTGTATCTATGGAGTTGAGGTGGGCAAGGAGGAGAAAATCTGATAATGCTGCATC 191
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 121 TTCTCTTGTATCTATGGAACTGAGGTGGGCAAGAAGAAGAAAATCTGATAATGCTGCATC 180
Query 192 GGCATTGCCTCGATCGATACCTATATATATCTCTACGTTGAAGAAAGACATAAATCTAGA 251
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GGCATTGCCTCGGTCTATACCTATATATATCTCTACGTTGAAGAAAGACATCAATCTAGA 240
Query 252 GGAATTGAGGAATTTGTATTCACTTTGTAACCATTCTTGCAACCGTTTGTCTGAGAAAGA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 GGAATTGAGGAATTTGTATTCACTTTGTAACCATTCTTGCAACCGTTTGTCTGAGTATGG 300
Query 312 CAGCAACGTTGAAAAGATTGTTGACATGAAAAAGCTGCGTAG-AGCTATCTCTCGCAGTG 370
|||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct 301 CAGCAACGTTGAAAAGATTGTTGACATGAAAAAGCTGCGT-GTAGCTATCTCCCGTAGTG 359
Query 371 ATGTTATTGTATCTGTGTTTTGCAAACCACAACACGTGGATGTTGATGATGCGGTTTTGT 430
||||| |||| ||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 360 ATGTTGTTGTCTCTGTGTTTTGCAAACCTCATCACGCGGATGTTGATGATGCGGTTTTGT 419
Query 431 ATTCAGAAGAAGAAAGTTTATCTTCTTCTTTGTATAC-TTCAGAATTTGGGAGACAAAAT 489
||||||||| || || ||| ||||||||||||||| | |||||||||||||||||| |||
Sbjct 420 ATTCAGAAG-AG-AA-TTTGTCTTCTTCTTTGTAT-CATTCAGAATTTGGGAGACAGAAT 475
Query 490 AAGGATGATAGTTTTCTGGGAGACTTGTTTCAGAATGCGGTGCCTCTCACTCCTTCCAAT 549
|||||||| |||| ||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 476 AAGGATGAGAGTTCTCTGGGAGACTTGTTTCAGAATGTGTTGCCTCTAACTCCTTCCAAT 535
Query 550 GGACAGCTTGTTGGATTCGGTCGTGCTTATTCTGATTATGGCTTGACCGCTTCTATCCAT 609
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 GGACAGCTTGTTGGATTCGGTCGTGCTTATTCTGATTATGGCTTGACTGCTTCTATCCAT 595
Query 610 GATCTAATGGTTTTACCTTCACTACAAAGGATGGGGATTGGTAAACTGATAGTAAACAGA 669
||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||
Sbjct 596 GATCTAATGGTTTTACCTTCAATACAACGGATGGGAATCGGTAAACTGATAGTAAACAGA 655
Query 670 ATTGTCAGGCTACTCACAAGCAGAGACATTTACGACATAGCAGCTCTCTGCTTCGAGGAT 729
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 656 ATTGTCAGGCTTCTCACAAGCAGAGACATCTACGACATAGCAGCTCTCTGCTTCGAAGAT 715
Query 730 GAAAGGCCATTCTTCAAAGCATGTGGGTTTGGAGATGACAGGATGGGTTCCACAACAATG 789
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAAAGGCCGTTCTTCAAAGCCTGTGGGTTTGGAGATGACAGGATGGGTTCCACAACAATG 775
Query 790 ATGTTCACAAAGAGCTTGGAGGCATAAAAGCAAAGCGAGAATGCTGATGGATCTTCAGAA 849
||||||||||||||||||||||||||||| | ||||||||| |||||| || ||||||||
Sbjct 776 ATGTTCACAAAGAGCTTGGAGGCATAAAACCGAAGCGAGAACGCTGATAGACCTTCAGAA 835
Query 850 ACTGCAGGTCAAAGCAAGTTATATTGATCTCTAAATGATGACCAACGAGAAAGGCCAAAG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ACTGCAGGTCAAAGCAAGTTATATTGATCTCTAAATGATGACCAACGAGAAAGGCCAAAG 895
Query 910 ATTCAGAGTCTTTCTTGCATTTGGAATTGATATCTAGTGGTTTACTCTCTTTT-TTCCTT 968
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||| ||
Sbjct 896 ATTCAGAGTCTTTCTTGCATTTGGATTTGATGTCTGGTGGTTTACTCTCTTTTATTC-TT 954
Query 969 CTTATCTCTTTCCATGTAAGGGAAATCTACTTAGTCCCATGTT 1011
||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 955 CTTATCTCTTTCCATGTAAGGCAAAGCTACTTAATCCCATGTT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5