BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20000.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329563 jgi|Araly1|329563|fgenesh1_pm.C_scaffold_7001790 809 0.0
> Ahg329563 jgi|Araly1|329563|fgenesh1_pm.C_scaffold_7001790
Length=630
Score = 809 bits (438), Expect = 0.0
Identities = 565/627 (90%), Gaps = 6/627 (1%)
Strand=Plus/Plus
Query 61 AACAACTCTAGAGAAGACCAGTGGTTACAACACTATGAGCAACA-AAATATTCAAGAGAT 119
|||||||||||||||||||||||||| | ||||||||| ||||| || |||||||||||
Sbjct 7 AACAACTCTAGAGAAGACCAGTGGTTGCGACACTATGAACAACACCAA-ATTCAAGAGAT 65
Query 120 TACTCCGTGCTTCAACGCCATTAACATCGCG-TCATCGTCGGGATCTTCCCTTGGAGACG 178
|| |||||||||||||||||||||||| | | ||||| ||||||||||||||| |||| |
Sbjct 66 TAATCCGTGCTTCAACGCCATTAACAT-GGGCTCATCATCGGGATCTTCCCTTCGAGATG 124
Query 179 GTGGTGCCGCGGCACATGAAGCTGCTGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 238
||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 125 GTGGTGCGGTGGAACATGAAGCTGCCGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 184
Query 239 CAACAACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTAGTTCAGAAATTTACCG 298
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 185 CAACGACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTTGTTCAGAAATTTACGG 244
Query 299 GACGTTCTGCCGGAGGTGAATCCAACCGCAGAAAAGGTCCGGTGACTTTGGATTTCGGGT 358
|||||||||| ||||||| |||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 245 GACGTTCTGCGGGAGGTGGATCCAACCGCAGAAAAGGTCCGGTTACTCTAGATTTTGGGT 304
Query 359 CTCCCACTACAATCTCCAAAGAAGCTATCTTTCCAGTCTCAAGC-GATCGAAGTAATAAC 417
|||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||||| ||
Sbjct 305 CTCCGACAACAATCTCTAAAGAAGCTATATTTCCTGTCTCC-GCCGATCGGAGTAATCAC 363
Query 418 AATCTTGATCATGTGGTCAACCAACACGTGAGTAACGAGCAGCGTCACGTGACTTGGTCA 477
|| | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 364 GATGATCATCATGTGCTTAACCAACACGTGAGTAACGAGCAGCCTCACGTGACTTGGTCA 423
Query 478 GGTACAGAATCAATGATGTCGTATCAGTTAGGCGAGGAAACTAACTCGGCGGTTTACAGC 537
||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct 424 GGTACAGAATCAACGATGTCGTACCAGCTAGGAGAGGAAACTAACTCGGCGGTTTACGGC 483
Query 538 AGCGGGTACGATGATCAAGATCTTCCGAGGGAATACTCCGGGAATAGTAGCTATGATGAA 597
||| |||||||||| |||||||||| || |||||| |||||||||||||| ||||||||
Sbjct 484 AGCAGGTACGATGACCAAGATCTTCTGAAGGAATATTCCGGGAATAGTAGTTATGATGAT 543
Query 598 AGTTTGGATCACATGGATTATTATCAAGATTTCCACCGTGAGACGGCAACATTGGAAGAG 657
|||| || |||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 544 AGTTCGGGTCACATGGATTATTATCATGATTTCCACCATGAGACGGCAACATTGGAGGAA 603
Query 658 TTTATGATGAGAGATCTCGATTTATAA 684
||||||||||||||||| |||||||||
Sbjct 604 TTTATGATGAGAGATCTTGATTTATAA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5