BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20000.1 Length=833 Score E Sequences producing significant alignments: (Bits) Value Ahg329563 jgi|Araly1|329563|fgenesh1_pm.C_scaffold_7001790 809 0.0 > Ahg329563 jgi|Araly1|329563|fgenesh1_pm.C_scaffold_7001790 Length=630 Score = 809 bits (438), Expect = 0.0 Identities = 565/627 (90%), Gaps = 6/627 (1%) Strand=Plus/Plus Query 61 AACAACTCTAGAGAAGACCAGTGGTTACAACACTATGAGCAACA-AAATATTCAAGAGAT 119 |||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||| Sbjct 7 AACAACTCTAGAGAAGACCAGTGGTTGCGACACTATGAACAACACCAA-ATTCAAGAGAT 65 Query 120 TACTCCGTGCTTCAACGCCATTAACATCGCG-TCATCGTCGGGATCTTCCCTTGGAGACG 178 || |||||||||||||||||||||||| | | ||||| ||||||||||||||| |||| | Sbjct 66 TAATCCGTGCTTCAACGCCATTAACAT-GGGCTCATCATCGGGATCTTCCCTTCGAGATG 124 Query 179 GTGGTGCCGCGGCACATGAAGCTGCTGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 238 ||||||| | || |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 125 GTGGTGCGGTGGAACATGAAGCTGCCGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 184 Query 239 CAACAACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTAGTTCAGAAATTTACCG 298 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 185 CAACGACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTTGTTCAGAAATTTACGG 244 Query 299 GACGTTCTGCCGGAGGTGAATCCAACCGCAGAAAAGGTCCGGTGACTTTGGATTTCGGGT 358 |||||||||| ||||||| |||||||||||||||||||||||| ||| | ||||| |||| Sbjct 245 GACGTTCTGCGGGAGGTGGATCCAACCGCAGAAAAGGTCCGGTTACTCTAGATTTTGGGT 304 Query 359 CTCCCACTACAATCTCCAAAGAAGCTATCTTTCCAGTCTCAAGC-GATCGAAGTAATAAC 417 |||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||||| || Sbjct 305 CTCCGACAACAATCTCTAAAGAAGCTATATTTCCTGTCTCC-GCCGATCGGAGTAATCAC 363 Query 418 AATCTTGATCATGTGGTCAACCAACACGTGAGTAACGAGCAGCGTCACGTGACTTGGTCA 477 || | |||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct 364 GATGATCATCATGTGCTTAACCAACACGTGAGTAACGAGCAGCCTCACGTGACTTGGTCA 423 Query 478 GGTACAGAATCAATGATGTCGTATCAGTTAGGCGAGGAAACTAACTCGGCGGTTTACAGC 537 ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||| || Sbjct 424 GGTACAGAATCAACGATGTCGTACCAGCTAGGAGAGGAAACTAACTCGGCGGTTTACGGC 483 Query 538 AGCGGGTACGATGATCAAGATCTTCCGAGGGAATACTCCGGGAATAGTAGCTATGATGAA 597 ||| |||||||||| |||||||||| || |||||| |||||||||||||| |||||||| Sbjct 484 AGCAGGTACGATGACCAAGATCTTCTGAAGGAATATTCCGGGAATAGTAGTTATGATGAT 543 Query 598 AGTTTGGATCACATGGATTATTATCAAGATTTCCACCGTGAGACGGCAACATTGGAAGAG 657 |||| || |||||||||||||||||| |||||||||| |||||||||||||||||| || Sbjct 544 AGTTCGGGTCACATGGATTATTATCATGATTTCCACCATGAGACGGCAACATTGGAGGAA 603 Query 658 TTTATGATGAGAGATCTCGATTTATAA 684 ||||||||||||||||| ||||||||| Sbjct 604 TTTATGATGAGAGATCTTGATTTATAA 630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30803316936 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5