BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20010.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492872 jgi|Araly1|492872|fgenesh2_kg.7__2305__AT4G20010.2 1820 0.0
> Ahg492872 jgi|Araly1|492872|fgenesh2_kg.7__2305__AT4G20010.2
Length=1355
Score = 1820 bits (985), Expect = 0.0
Identities = 1256/1380 (91%), Gaps = 46/1380 (3%)
Strand=Plus/Plus
Query 32 AAATTTTGCCCCCTTTT-GCTTCAATTTGTTGTTTCCTTAAACCCTTC-AA-AGCAAAAT 88
||||||| ||||||||| | ||||| | |||||||||||||||| || || | |||||
Sbjct 1 AAATTTTTCCCCCTTTTGGTTTCAA--T-TTGTTTCCTTAAACCC-TCAAATAAAAAAAT 56
Query 89 TAGGGTTTCTCTTGGTT-TTCGC-AAATTAGGGATTT-TTTCTCTCGTTCTCATGAAAAG 145
||||||||||||| ||| ||| | ||||| ||||||| ||| ||| ||| | ||||||||
Sbjct 57 TAGGGTTTCTCTT-GTTCTTCACGAAATT-GGGATTTGTTT-TCTAGTTGTTATGAAAAG 113
Query 146 ATGAGTTTGATTTCCAAATCCTTGGCAAGAATTG-AATGTTCGCCAtttttttATCCAAG 204
|||| ||||||||||||||| ||| ||||||| | ||| |||||||||||| |||| |
Sbjct 114 ATGAATTTGATTTCCAAATCATTGACAAGAATCGAAAT-TTCGCCATTTTTCCATCCCGG 172
Query 205 AGCTTCAGAAATCACTACCGGAAAACGGATAACCTCTCCGCAAATCCG-TTTATACACTG 263
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 173 AGCTTCAGAAATCACTACCGGAAAACGGATAACCTCTCCGCAAATCCGCTTT-TACACTG 231
Query 264 CGGCGGCCGTCGGCGGGAAAACTGGAAATGGAGAAAGGAAACAAAGAGCCAAAGCACCGG 323
||||||||| |||||||| || ||||||| | || |||||||||||||||| |||||
Sbjct 232 CGGCGGCCGGCGGCGGGAGCACCAGAAATGGCGGAACGAAACAAAGAGCCAAACCACCGA 291
Query 324 CGAAAACTCCGGAGGCAGTGACACCTGTGAAACCGCTGGAGATTGCGTCAGTCACGGCGA 383
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||
Sbjct 292 CGAAAACTCCGGAGGCAGTGACACCTGTGAAAACGCTGGAAATTGCGCCAGTCA---CG- 347
Query 384 CGACGGAGAATGAATTGCCTCGGCCTAATGAGATAGCTTACGAGAGTGAAGTAGCGAATT 443
| | ||| | | | ||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 348 -G-C---GAA-G-A----CGCGGCCAAATGAGATAGCTTTCGAGACTGAAGTAGCGAATT 396
Query 444 GGGTTAATCTGATTGGATTTGTTGATCAACCAGTTCAATTCGAAGCTTCTTCTGATGGCA 503
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GGGTGAATCTGATTGGATTTGTTGATCAACCAGTTCAATTCGAAGCTTCTTCTGATGGCA 456
Query 504 AATTCTGGGCTGGTACTGTTATTTCCCAGAGGTCTGCTTCAGATTCCTCTGGTTTCTGGA 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AATTCTGGGCTGGTACTGTTATTTCCCAGAGGTCTGCTTCAGATTCCTCTGGTTTCTGGA 516
Query 564 TTCCGATAATATTTGAAGGCGATTTAGCTAAAACCGCAGCTCGATATGTAAGCAAAGACG 623
||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||| |||
Sbjct 517 TTCCGATAATATTTGAAGGTGATTTAGCTAAAACCGCAGCTCAATATATAAATAAAAACG 576
Query 624 ATCAAATTCATGTGTCTGGGAAGCTGTTTATAGATTCTCCTCCTCCAAATATGACTTATG 683
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 577 ATCAAATTCATGTTTCTGGGAAGCTTTTTATAGATTCTCCTCCTCCAAATATGACTTATG 636
Query 684 CACAAGCCAATGTTCAGGTATTGGTCCAGAATCTTAACTTTATACAGCCTATGTCCCCGT 743
||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 637 CACAAGCCAATGTTCAGGTGTTGGTCCAGAATCTTAACTTTCTACAGCCTACGTCTCCGT 696
Query 744 CTCCGTCGCCATTTATGGTTATGTCATCATCTGAAAAGGAAGAAAGTGGTATCAAGAAGC 803
||||||||||| |||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 697 CTCCGTCGCCACTTATGGTTATATCGTCGTCTGAAAAGGAAGAAAGTGGCATCAAGAAGC 756
Query 804 AGCCTGCTAGAGCTAAGCAGGATATAGTCATTGATGAAGCTTCAGATTCTTGGAATCACC 863
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 ACCCTGCTAGAGCTAAGAAGGATATAGTCATTGATGAAGCTTCAGATTCTTGGAATCACC 816
Query 864 TCATTGAAAATCCTAAAGAATGGTGGGATCACCGGGAAAATAAAGTCAATGGATTGGTAA 923
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 817 TCATTGAGAATCCTAAAGAATGGTGGGATCACCGGGAAAATAAAGTCAACGGATTGGTAA 876
Query 924 AACCTAGGCATCCTGATTTCAAAAGCAAGGACAGTAGTTTTTCGCTGTGGCTCAATAAGG 983
|||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 877 AACCAAGGCATCCTGATTTCAAAAGCAAGGACAGTAGTCTCTCATTGTGGCTCAATAAGG 936
Query 984 CTCCTAATTGGGTTTTGCCAAAACTCGAAGGACTCGAGTTCGATGTTCTAGTCCCTAAAG 1043
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 937 CTCCTAATTGGGTTTTGCCGAAACTCGAGGGACTCGAGTTTGATGTTCTAGTCCCTAAAG 996
Query 1044 CCAGAGTTGTAAAACAACTTAAAGGAGAAGAATCATGGAAGGACTTGGTTCAGAACCCAG 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 997 CCAGAGTTGTAAAACAACTTAAAGGAGAAGAATCATGGAAGGACTTGGTTCAAAACCCGG 1056
Query 1104 ATAAATGGTGGGACAATAGAATCGACAAGAGAAATGCAAAAGCCCCTGATTTCAAGCACA 1163
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1057 ATAAGTGGTGGGACAATAGAATTGACAAGAGAAATGCAAAAGCCCCTGATTTCAAGCATA 1116
Query 1164 AGGAGACAGGTGAAGCACTGTGGCTAAACGAGTCTCCTACTTGGGTATTACCGAAACTGC 1223
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1117 AGGAGACAGGTGAAGCACTGTGGCTAAATGAGTCTCCTACTTGGGTATTACCGAAACTGC 1176
Query 1224 CACCAGTCAAGAAGAAACAAGAAAGTATTGTCTT-TTAGCTTTAGAAA--------CATT 1274
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1177 CACCAGTCAAGAAGAAACAAGAATGTATTGTCTGATTAGCTTTAGAAAGTTAGAAACATT 1236
Query 1275 ATCTCCATGTAAAGAGCTCCAA--G-TGTTTACAAAATTCATCATTTCTATTCAAAGTGG 1331
||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 1237 ATCTCCATGTAAAGAGCTCGAATTGGTGTTTACAAAATTCATCATTTCTATTCAATGTGG 1296
Query 1332 TC-TTCAAAGTTCCGTTTGATTTTTGGTTAGTAGACTGAATACAGTAGCTACAAGTGTGG 1390
|| || || ||||| |||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 1297 TCATTGAA-GTTCCATTTGATCTTTGGTTAGTAGACTCAATACAGTAGCTATAAGTGTGG 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5