BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20020.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492871 jgi|Araly1|492871|fgenesh2_kg.7__2304__AT4G20020.2 1299 0.0
> Ahg492871 jgi|Araly1|492871|fgenesh2_kg.7__2304__AT4G20020.2
Length=1415
Score = 1299 bits (703), Expect = 0.0
Identities = 811/864 (94%), Gaps = 4/864 (0%)
Strand=Plus/Plus
Query 61 CGATGGCTATGATATCTCACCGTCTCCGACGAGCTTTACTCACTGCGACTTCCTATGTTA 120
||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 22 CGATGGCTATGTTATCTCACCGTATCAGACGAGCTTTACTCACGGCGACTTCCTATGTTA 81
Query 121 ACCGATCAATTAGCTCTT-CGATCACACCAGCGTCTGATTTCCCTTCTGTGTCGGCGGCG 179
|||||||||| || ||| || | |||||||||| ||||||||||||||||||||||||
Sbjct 82 ACCGATCAATCGGCACTTCCG-TTTCACCAGCGTCCGATTTCCCTTCTGTGTCGGCGGCG 140
Query 180 GTGTTAAAGAGATCCGTTATAGGGCGTTCGACGGAAGTAGCTACTCGAGCACCGGCGAGA 239
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 GTGTTACAGAGATCCGTTTTAGGGCGTTCGACGGAAGTAGCTACTCGAGCTCCGGCGAGA 200
Query 240 CTGTTTTCAACGAGGCAGTACAAGCTTTACAAAGAAGGTGATGAGATCACGGAAGACACT 299
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTGTATTCGACGAGGCAGTACAAGCTTTACAAAGAAGGTGATGAGATCACGGAAGACACT 260
Query 300 GTGTTGTTCGAAGGATGTGATTATAATCACTGGCTTATCACTATGGATTTCTCCAAAGAG 359
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 261 GTGTTGTTCGAAGGGTGTGATTATAATCATTGGCTTATCACTATGGATTTTTCCAAAGAG 320
Query 360 GAAACTCCTAAGTCTCCAGAAGAAATGGTCGCTGCTTATGAAGAAACTTGCGCCCAAGGA 419
|||||||| ||||||||||| ||||||||| |||| |||||||||||||| |||||||||
Sbjct 321 GAAACTCCCAAGTCTCCAGAGGAAATGGTCTCTGCCTATGAAGAAACTTGTGCCCAAGGA 380
Query 420 CTTGGCATCAGCGTGGAAGAGGCTAAGCAAAGGATGTATGCTTGTAGCACAACTACTTAC 479
||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 381 CTTGGTATCAGTGTGGAAGAGGCAAAGAAAAGAATGTATGCTTGTAGCACAACTACTTAC 440
Query 480 CAAGGATTTCAAGCAATCATGACTGAACAAGAATCAGAAAAGTTCAAGGATCTACCCGGA 539
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 441 CAAGGTTTTCAAGCAATCATGACTGAGCAAGAATCAGAAAAGTTCAAGGATCTGCCCGGA 500
Query 540 GTGGTTTTCATCTTGCCAGATTCCTACATTGATCCCCAGAACAAAGAGTATGGAGGAGAT 599
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GTTGTCTTCATATTACCAGATTCCTACATTGATCCCCAGAACAAAGAGTATGGAGGAGAC 560
Query 600 AAATACGAGAATGGAGTGATAACACACAGGCCACCACCGATTCAGAGTGGCAGAGCAAGA 659
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 561 AAATACGAGAATGGAGTGATCACACACAGGCCACCACCGATTCAGAGTGGCAGACCAAGA 620
Query 660 CCTCGTCCTAGATTTGACCGTTCAGGAGGAGGAAGTGGTGGTCCCCAAAACTTCCAAAGA 719
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 621 CCCCGTCCTAGATTTGACCGTTCAGGAGGAGGAGGTGGTGGTCCCCAAAACTTCCAAAGA 680
Query 720 AACACACAGTATGGTCAGCAACCACCAATGCAAGGTGGTGGAGGGAGCTATGGTCCTCAA 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 681 AACACACAGTATGGTCAGCAACCACCAATGCAAGGTGGTGGAGGGAGCTTTGGTCCTCAA 740
Query 780 CAGGGCTATGCCACTCCAGGACAAGGTCAGGGAACTCAAGCGCCTCCACCATTTCAAGGA 839
|||||||||| | |||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 741 CAGGGCTATGGCTCTCCAGGACAGGGTCAGGGAATTCAAGGGCCTCCACCATTTCAAGGA 800
Query 840 GGTTATAACCAAGGCCCGAG-ATCTCCACCACCTCCATATCAGGCAGGTTACAATCAAGG 898
||||| ||||||||||| || ||||||||| |||||||||||||| ||||||||||||||
Sbjct 801 GGTTACAACCAAGGCCC-AGGATCTCCACCGCCTCCATATCAGGCGGGTTACAATCAAGG 859
Query 899 CCAGGGATCTCCAGTGCCTCCATA 922
||||||||||||||||||||||||
Sbjct 860 CCAGGGATCTCCAGTGCCTCCATA 883
Score = 538 bits (291), Expect = 4e-152
Identities = 357/389 (92%), Gaps = 4/389 (1%)
Strand=Plus/Plus
Query 873 CCATATC-AGGCAGGTTACAATCAAGG-CCAGGGATCTCCAGTGCCTCCATATCAGGCAG 930
|||| || ||| ||||||||| ||||| ||| ||||||||| ||||||||||||||| |
Sbjct 789 CCATTTCAAGG-AGGTTACAACCAAGGCCCA-GGATCTCCACCGCCTCCATATCAGGCGG 846
Query 931 GTTACAATCAAGTCCAGGGATCTCCAGTGCCTCCATACCAAGGAACACAAAGCAGTTACG 990
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTTACAATCAAGGCCAGGGATCTCCAGTGCCTCCATACCAAGGAACACAAAGCAGTTACG 906
Query 991 GTCAAGGTGGATCTGGGAACTATAGTCAAGGGCCACAAGGTGGTTACAACCAAGGAGGAC 1050
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 907 GTCAAGGTGGACCTGGGAACTATAGCCAAGGGCCACAAGGAGGTTACAACCAAGGAGGAC 966
Query 1051 CTAGGAATTACAATCCACAGGGAGCTGGAAACTTTGGTCCTGCATCTGGAGCTGGAAACT 1110
|||||||||||| ||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 967 CTAGGAATTACAGTCCACAGGGAGCTGGCAACTTCGGTCCTGCACCGGGAGCTGGAAACT 1026
Query 1111 TAGGTCCTGCACCTGGAGCTGGAAATCCTGGCTATGGTCAGGGGTATTCTGGACCAGGAC 1170
| ||||||||||| |||||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 1027 TTGGTCCTGCACCGGGAGCTGGAAATCCCGGTTATGGTCAAGGATATTCTGGACCTGGAC 1086
Query 1171 AAGAGCAGAATCAGACATTCCCACAGGCAGATCAGAGGAATCGAGACTGGAACAACAATA 1230
||||||||||||| ||||| |||||| || |||||||||||| |||||||||||||||||
Sbjct 1087 AAGAGCAGAATCAAACATTTCCACAGACAAATCAGAGGAATCCAGACTGGAACAACAATA 1146
Query 1231 ATCCAGCAGGCCAGCCCGGGTCTGACCAA 1259
||||||| |||||||| ||||||||||||
Sbjct 1147 ATCCAGCTGGCCAGCCTGGGTCTGACCAA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5