BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G20030.1

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492869 jgi|Araly1|492869|fgenesh2_kg.7__2302__AT4G20030.1         867    0.0  
  Ahg492868 jgi|Araly1|492868|fgenesh2_kg.7__2301__AT4G20040.1        95.3    5e-19


> Ahg492869 jgi|Araly1|492869|fgenesh2_kg.7__2302__AT4G20030.1
Length=553

 Score =  867 bits (469),  Expect = 0.0
 Identities = 526/554 (95%), Gaps = 2/554 (0%)
 Strand=Plus/Plus

Query  22   CTCTCTATTTCCGGCGACTGTGAATTATGTGGTCGGCGACGTTATCTTTCCCTTCTTTTG  81
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTCTCTATCTCCGGCGACTGGGAATTATGTGGTCGGCGACGTTATCTTTCCCTTCTTTTG  60

Query  82   TGGCTTCTTCATCTTCTCTACCTAATTACAGGAACCTTAGGTTTCCAAAGATTAAAGCTT  141
            |||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||
Sbjct  61   TGGCTTCTTCATCTTCTCTACCAAATTACAGAAACCGTAGGTTTCCGAAGATTAAAGCTT  120

Query  142  CGCTCTTTAATTACCCTCTAGCGAGCAAAATCATGGTCAGAAATTTACCGTTTTCTACAA  201
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGCTTTTTAATTACCCTCTTGCGAGCAAAATCATGGTCAGAAATTTACCGTTTTCTACAA  180

Query  202  GTGAAGATTTTCTAAAGAGAGAGTTTTCAGCTTTTGGAGAGATAGCTGAAGTTAAGCTTA  261
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTGAAGATTTTCTAAAGAGGGAGTTTTCAGCTTTTGGAGAGATAGCTGAAGTTAAGCTTA  240

Query  262  TCAAAGATGAGGCAATGAAGAGATCAAAAGGTTATGCTTTTATTCAATTCACGTCTCAAG  321
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  241  TCAAAGATGAGTCAATGAAGAGATCAAAAGGTTATGCTTTTATTCAGTTCACGTCTCAAG  300

Query  322  ATGATGCTTTTCTTGCCATAGAGACCATGGACCGTCGGATGTACAATGGCAGAATGATTT  381
            ||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||
Sbjct  301  ATGATGCTTTTCTTGCCATTGAGACCATGGACCGTCGGATGTATAATGGTAGGATGATTT  360

Query  382  ATATAGACATTGCGAAACCAGGTAAACGTGATTTCCAAGGACTGCCTAGGACTTCTGGTC  441
            ||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct  361  ATATAGACATTGCAAAACCCGGGAAACGTGATTTCCAAGGACTGCCGAGGACTTCCGGTC  420

Query  442  CACCTGAGAAGTCGGATGAGCCAGAAGAAGCCGCTAATGATGAGGTTGCTGATTGCTGGT  501
            | |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  421  CCCCTGCGAAGTCGGATGTGCCAGAAGAAGCTGCTAATGATGAGGTTGCTGATTGCTGGT  480

Query  502  ATTAGTTGTTAGTATCAAGCTCAC-CAAACTGTAACTGAACTTGTATAAATCAGATGTCA  560
            |||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct  481  ATTAATTGTTAGTATCAAGCTC-CTCAAACTGTAACTGAACTTGCATAAATCAGATGTCA  539

Query  561  AATCATGCTTTCTT  574
            ||||||||||||||
Sbjct  540  AATCATGCTTTCTT  553


> Ahg492868 jgi|Araly1|492868|fgenesh2_kg.7__2301__AT4G20040.1
Length=1629

 Score = 95.3 bits (51),  Expect = 5e-19
 Identities = 71/80 (89%), Gaps = 4/80 (5%)
 Strand=Plus/Minus

Query  575   ATTAGGA-ATATGATCAAT-GTGAAGAATGTTGTTTTACTGATAAGCAATTATTGACACG  632
             ||||||| | |||||||||  | ||||||| || ||||||| ||| ||||||||||||||
Sbjct  1629  ATTAGGACA-ATGATCAATACT-AAGAATGATGGTTTACTGGTAAACAATTATTGACACG  1572

Query  633   GTTCCAGTTACAGCTCTATC  652
             ||||||||||||||||||||
Sbjct  1571  GTTCCAGTTACAGCTCTATC  1552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23903068959


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5