BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20040.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492868 jgi|Araly1|492868|fgenesh2_kg.7__2301__AT4G20040.1 2451 0.0
Ahg946162 jgi|Araly1|946162|scaffold_702391.1 998 0.0
> Ahg492868 jgi|Araly1|492868|fgenesh2_kg.7__2301__AT4G20040.1
Length=1629
Score = 2451 bits (1327), Expect = 0.0
Identities = 1537/1639 (94%), Gaps = 12/1639 (1%)
Strand=Plus/Plus
Query 1 AAAAAATAAACCAAAATTTAATAACAGAGATTATTTGCCTTTTAATACATATACACACAC 60
|||||||||||||||| |||||||||||||||||||||| ||| | | ||||||||||
Sbjct 1 AAAAAATAAACCAAAAATTAATAACAGAGATTATTTGCC-TTT--T--A-ATACACACAC 54
Query 61 GCACATATCTACCTGCATCTTCTTCATAATCATTCCTAAGAAATTCTCTCTCTCACACAC 120
|| ||||| |||||||| |||||||||||| |||||||| ||||||||||||| | |||
Sbjct 55 GCTCATATTTACCTGCAACTTCTTCATAATTATTCCTAACAAATTCTCTCTCT--CTCAC 112
Query 121 TCAAGAACAAGACAAGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTCATTAGCTTGT 180
|||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 113 TCAAGAACAAGAGACGAGTCAAGAAAAATCAGATGAGTCTCTATAGCTTTGTTAGCTTGT 172
Query 181 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATCATCCTTAAGAAGAG 240
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 173 TGTTACTGTTTCTCATCACGATTTCAATGGAGTTTAAAGAGACATTATCTTTAAGAAGAG 232
Query 241 ACATGACCAAGCTTTTAAAGCTCCAAGAGAAGATTCAAGAAAGACTCGCAGTCACTCCCA 300
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 233 ACATGACCAAGCTTTTAAAGTTCCAAGAAAAGATCCAAGAAAGACTCGCAGTCACTCCCA 292
Query 301 CTCTCTCACCAGTGTCTTCTCCTTCTTCTCACTCTCCCAAAATGGTTGGGAAGGTGATAT 360
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 293 CTCTCTCGCCAGTGTCTTCTCCTTCTTCTCAATCTCCCAAAATGGTGGGGAAGGTGATAT 352
Query 361 ACCCGATTGGTTACGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ACCCGATTGGTTAAGGAGCTGACCCTACAGGTGGACAAGACAGTAGTGACGCAATACTTG 412
Query 421 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AAGCTTTAACTGATGCTTTTCAGTTACAAACTGGACTTGAGATGCTGCCACGTGTCGCTG 472
Query 481 ATTTAGGTGGTCTAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 540
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ATCTAGGTGGTATAGTTATTGATCTCCAAGGTGGCAGTTACATGATCGGAAAACCTCTCA 532
Query 541 GGTTCCCTTCCTCCGGTGGCGGAAATCTTGTGGTGAAAGGTGGGACTTTCCGGGCATCAG 600
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 533 GGTTCCCTTCCTCCGGCGGAGGAAATCTCGTGGTGAAAGGTGGGACTTTCCGGGCATCGG 592
Query 601 AACTGTTTCCTGGTGATAGGCATTTAGTTGAGCTTGTAGCATCAAACGCTAAGAAACCAA 660
|| ||||||| |||||||||||||| ||||||||||| ||||||||| | |||| |||
Sbjct 593 AAGTGTTTCCCGGTGATAGGCATTTGGTTGAGCTTGTGGCATCAAACTCCCGGAAAACAA 652
Query 661 TGAAAATGTCGCCAGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGAAAATGTCGCCGGAGGAGTCTTTCTCCGATCAGAAAGACCAGAGCTCTGGGATCTTCT 712
Query 721 ATGAGGATGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 780
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ATGAGGACGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAGGTGGTATTT 772
Query 781 TGGTGATTGACTCAGCTCGTATCCGTATAACCAATTGTTATTTCCTCCATTTCACAACGC 840
||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 773 TGGTGATTGACTCGGCTCGTATCCGTATAACCAATTGCTACTTCCTCCATTTCACAACAC 832
Query 841 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AAGGGATTAAAGTCCAAGGAGGTCATGAGACATACATTTCAAACTCCTTCTTGGGGCAAC 892
Query 901 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTACTGGGACAGGAATCGATATCT 960
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 893 ATTCAACGGTAGGAGGAGACAGAGAAGAAAGAGGATTTTCCGGGACAGGAATCGATATCT 952
Query 961 CGAGTAACGACAATGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1020
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTAGTAACGATACTGCCATTACGGATGTAGTGATTTTCTCGGCTGGTATCGGTATCTCTT 1012
Query 1021 TGAATGGTGGTGCAAATATGGTTACGGGTGTGCATTGCTACAATAAAGCTACATGGTTTG 1080
|||| || || || ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1013 TGAACGGCGGGGCGAATATGGTTACAGGCGTGCATTGCTACAATAAAGCTACATGGTTTG 1072
Query 1081 GTGGCATTGGCATTCTAGTGAAATCACATTTAACGAGGATAGATAATTGTTACCTTGATT 1140
|||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1073 GTGGAATCGGCATTCTTGTGAAATCGCATTTAACTAGGATAGATAATTGTTACCTTGATT 1132
Query 1141 ACACAGGTATAGTCATAGAAGACCCTGTCCATGTTCATGTCACCAATGCTTTGTTCTTAG 1200
||||| |||||||||| ||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1133 ACACAAGTATAGTCATTGAAGATCCTGTCCATGTTCATGTTACAAATGCTTTGTTCTTAG 1192
Query 1201 GAGATGCAAACATCGTCTTGAGATCGGTACACGGGAAGATTTCCGGTGTAAACATCGTCA 1260
||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1193 GAGATGCGAATATCGTCTTGAGATCGGTGCACGGGAAGATTTTCGGTGTAAACATCGTCA 1252
Query 1261 ACAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCGATTGTCAAGCTAGAAGGAGAGT 1320
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1253 ATAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCAATTGTCAAGCTAGAAGGAGAGT 1312
Query 1321 TTCATGATATTAATCAAGTTGTGATTGATCAAAACAATGCAGAAGGGATGATGCTGAAAT 1380
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1313 TTCATGATATTGATCAAGTTGTGATTGATCAGAACAATGCAGAAGGGATGATGTTGAAAT 1372
Query 1381 CAACAACCGGAAAGGCCATGGTTTCCGCAAATGGAACACGATGGATCGCTGATTTTTCCC 1440
|||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1373 CAACAACCGGAAAGGCCAAGGTTTCCGCGAATGGGACAAGATGGATCGCTGATTTTTCCT 1432
Query 1441 CTGTTTTGGTATTCCCTAACCGGATAAACCATTACCAGCATTCGTTTTTCGCTCAATCCG 1500
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1433 CTGTTTTGGTATTCCCAAACCTGATAAACCATTACCAGCATTCGTTTTTCTCTCAATCCG 1492
Query 1501 GACAGATCCCTGCAAATGCAGTGACCAATGTCTCCAACAATATGGTGGTTGTAGAAACCG 1560
| ||||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 1493 GGCAGATACCAGCAAATGCAGTGACCAATGTTTCCAACAATGTGGTAGTTGTAGAAACCG 1552
Query 1561 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGCTTATCAGTAAAACAACATTCTTCAC- 1619
||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| |
Sbjct 1553 ATAGAGCTGTAACTGGAACCGTGTCAATAATTGTTTACCAGTAAACCATCATTCTT-AGT 1611
Query 1620 ATTGATCATAT-TCCTAAT 1637
||||||||| | |||||||
Sbjct 1612 ATTGATCAT-TGTCCTAAT 1629
> Ahg946162 jgi|Araly1|946162|scaffold_702391.1
Length=1300
Score = 998 bits (540), Expect = 0.0
Identities = 755/859 (88%), Gaps = 13/859 (2%)
Strand=Plus/Plus
Query 712 GGATCTTCTATGAGGATGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAG 771
||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||| |
Sbjct 427 GGATCTTCTATGAGGATTTGACCTTCCGAGACATTCTGTTCGACTCAAGCTTCCGAGGCG 486
Query 772 GTGGTATTTTGGTGATTGACTCAGCTCGTATCCGTATAACCAATTGTTATTTCCTCCATT 831
| |||||||| || | |||||||||||||||||| |||||| |||| || ||||||||||
Sbjct 487 GGGGTATTTTTGTAACTGACTCAGCTCGTATCCGCATAACCGATTGCTACTTCCTCCATT 546
Query 832 TCACAACGCAAGGGATTAAAGTCCAA-GGAGGTCATGAGACATACATTTCAAACTCCTTC 890
||||||| || ||||||||| | ||| || || || |||||||||||||||||||||||
Sbjct 547 TCACAACTCAGGGGATTAAAAT-CAAGGGTGGCCACGAGACATACATTTCAAACTCCTTT 605
Query 891 TTGGGGCAACATTCAACGGTAGGAGGAGACAGAGAAGAAA-GAGGATTTACTGGGACAGG 949
|||||||||| |||||||||||| |||||| | |||||| | | ||| | |||||||
Sbjct 606 TTGGGGCAACGTTCAACGGTAGGTGGAGACCCACAAGAAATAAAG-TTTTCCAGGACAGG 664
Query 950 AATCGATATCTCGAGTAACGACAATGCCATTACGGATGTAGTGATTTTCTCGGCTGGTAT 1009
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 665 AATCGATATCTCAAGTAACGATAATGCCATTACAAATGTAGTGATTTTCTCGGCTGGGAT 724
Query 1010 CGGTATCTCTTTGAATGGTGGTGCAAATATGGTTACGGGTGTGCATTGCTACAATAAAGC 1069
||||||||| ||||| ||| || |||||| | || || ||||||||||||||||||||
Sbjct 725 CGGTATCTCGTTGAA---TGGCGCGAATATGATCACAGGCGTGCATTGCTACAATAAAGC 781
Query 1070 TACATGGTTTGGTGGCATTGGCATTCTAGTGAAATCACATTTAACGAGGATAGATAATTG 1129
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 782 TACATGGTTTGGTGGAATCGGCATTCTAGTGAAATCACATTTAACAAGGATAGACAATTG 841
Query 1130 TTACCTTGATTACACAGGTATAGTCATAGAAGACCCTGTCCATGTTCATGTCACCAATGC 1189
||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||| |
Sbjct 842 TTACCTTGATTACACAGGTATAGTCATTGAAGATCCTGTTCACGTTCATGTCACAAATTC 901
Query 1190 TTTGTTCTTAGGAGATGCAAACATCGTCTTGAGATCGGTACACGGGAAGATTTCC-GGTG 1248
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 902 TCTGTTCTTAGGAGATGCTAACATCGTCTTGAGATCAGTACACGGGAAGATTTCCGGGT- 960
Query 1249 TAAACATCGTCAACAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCGATTGTCAAGC 1308
||||||||||||| | ||||||||||||||| |||||| |||||||||||| ||||| |
Sbjct 961 TAAACATCGTCAATAGCATGTTTAGCGGTACTGCCAAATTCAACTTCCCGATCGTCAAAC 1020
Query 1309 TAG-AAGGAGAGTTTCATGATATTAATCAAGTTGTGATTGATCAAAACAATGCAGAAGGG 1367
| | ||||||||||||||||||| ||||||||||| ||||||| ||||||||| || |
Sbjct 1021 T-GAAAGGAGAGTTTCATGATATCGATCAAGTTGTGGTTGATCACAACAATGCATCAGAG 1079
Query 1368 ATGATGCTGAAATCAACAACCGGAAAGGCCATGGTTTCCGCAAATGGAAC-ACGATGGAT 1426
|||||| | |||||||||||||||| | | | ||||| |||||| || || | ||||| |
Sbjct 1080 ATGATGTTAAAATCAACAACCGGAATGTCAAAGGTTTACGCAAACGGGACGA-GATGGGT 1138
Query 1427 CGCTGATTTTTCCCCTGTTTTGGTATTCCCTAACCGGATAAACCATTACCAGCATTCGTT 1486
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 CGCTGATTTTTCCCGTGTCTTGGTATTCCCAAACCGGATAAACCATTACCAGCATTCGTT 1198
Query 1487 TTTCGCTCAATCCGGACAGATCCCTGCAAATGCAGTGACCAATGTCTCCAACAATATGGT 1546
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1199 TTTCGCTCAATCTGGACAGATTCCTGCAAATGCAGTGACCAAAGTCTCCAACAATGTGGT 1258
Query 1547 GGTTGTAGAAACCGATAGA 1565
||||||| |||| |||||
Sbjct 1259 CGTTGTAGCAACCAATAGA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5