BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20050.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492866 jgi|Araly1|492866|fgenesh2_kg.7__2299__AT4G20050.1 2612 0.0
> Ahg492866 jgi|Araly1|492866|fgenesh2_kg.7__2299__AT4G20050.1
Length=1811
Score = 2612 bits (1414), Expect = 0.0
Identities = 1604/1696 (95%), Gaps = 12/1696 (1%)
Strand=Plus/Plus
Query 236 TAATTAACTTTTCGTTTGGCTCTGTTTTACATTCACAGGCCTCAAGTATAACCCCATTC- 294
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 121 TAATTAACTTTTATTTTGGCTCTGTTTTACATTCACAGGCCTCAAATACAACCCCA-TCG 179
Query 295 GAATCCCTAAACAATAGAGAATCTCACAATCAAGATCAATT-CAGAGGAGGAAACCATGG 353
||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 180 GAATCCCTAAACAATAGAGAAGCTCAAAATCAAGATCAATTAGAGAGGAGGAAACCATGG 239
Query 354 AGCTAAGGAAATCTCAAGTGGCCATGCCTGTTTTCTTGGCAATAATGAGTCTAATGGTGA 413
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 240 AGCTAAGGAAAACTCAAGTGGCCATGCCGGTTTTCTTGGCGATAATGAGTCTAATGGTGA 299
Query 414 GTCAAGTGGTCTTCGCCGAGAAAGATTCAGGTTCAATGTCCCCTCATGATC-GGGCATTA 472
||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||
Sbjct 300 GTCAAGTGGTCTTCGCCGAGAAATATTCAGGTTCAATGTCCCCTCATGA-CAGGAAATTG 358
Query 473 GCAGAAATGCAAGCCCTTAAAGCTTCATTGGTTCGGCGAAATCTACCGGCTTTGGTATCT 532
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 GCAGAAATGCAAGCTCTTAAAGCTTCATTGGTTCGCCGAAATCTACCGGCTTTGGTATCT 418
Query 533 CCTCCTCCTACCCCTCCTCAGGCCGTACCCGGTCCGCGCGTGTACCAAGTGATATCATAT 592
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTCCTCCTACCCCTCCTCAGGCAGTACCCGGTCCGCGCGTGTACCAAGTGATATCATAT 478
Query 593 GGTGCCGATCCCACAGGGAAATTGGATAGCACGGATGCAATATTAAAAGCTATGGAAGAA 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTGCCGATCCCACAGGGAAATTGGATAGCACGGATGCAATATTAAAAGCTATGGAAGAC 538
Query 653 GCATTTGATGGTCCAAATCATGGAGTTTTGATGCAAGGTATAAATGATCTCGGAGGAGCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCATTTGATGGTCCAAATCATGGAGTTTTGATGCAAGGTATAAATGATCTCGGAGGAGCA 598
Query 713 AGAATTGATCTTCAAGGTGGAAGCTACTTAATCAGCCGTCCTCTACGGTTTCCCTCAGCC 772
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 AGAATCGATCTTCAAGGTGGAAGCTACTTAATCAGCCGTCCTCTACGATTTCCCTCAGCC 658
Query 773 GGCGCCGGAAATCTTCTTATAAGCGGAGGTACATTAAGAGCATCAAATGATTTCCCGGTC 832
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 GGCGTCGGAAATCTTCTCATAAGCGGAGGTACATTAAGAGCATCAAATGATTTTCCGGTC 718
Query 833 GATAGGTACTTAATCGAACTCAAAGACGAATCGTCAAAGTTACAATACATCTTCGAATAC 892
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 719 GATAGGTACTTAATCGAACTCAAAGACGAAAAGTCAAAATTACAATACATCTTCGAATAC 778
Query 893 ATAACTCTCAGAGATCTTCTCATCGATTGCAACTACCGCGGCGGAGCAATCGCCGTCATC 952
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 779 ATAACTCTCAGAGATCTTCTCATCGACTGTAACTACCGCGGCGGAGCAATCGCCGTCATC 838
Query 953 AACTCTCTCCGGACAAGCATAGACAACTGTTACATCACACGGTTCGGAGACACGAACGGG 1012
|| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 839 AATTCTCTCCGGACAAGCATTGACAACTGTTACATCACACGATTTGGAGACACGAACGGG 898
Query 1013 ATTCTTGTCAAAAGTGGACACGAGACTTATATCCGAAACTCGTTTCTTGGTCAACACATA 1072
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTCTTGTCAAAAGCGGACACGAGACTTATATCCGAAACTCGTTTCTTGGTCAACACATA 958
Query 1073 ACCGCCGGTGGAGACAGAGGAGAAAGAAGCTTTTCCGGCACCGCCATCAATTTGATGGGA 1132
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 959 ACCGCCGGTGGAGACAGAGGAGAAAGAAACTTTTCCGGCACCGCCGTGAATTTGATGGGA 1018
Query 1133 AACGATAACGCCGTTACTGACACCGTTATATTCTCCGCCAGGATCGGAGTAATGGTATCG 1192
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1019 AACGATAACGCCGTTACTGACACCGTTATATTCTCCGCTAGGGTCGGAGTAATGATATCG 1078
Query 1193 GGACAAGCTAACTTATTGTCCGGCGTGCATTGCTATAACAAAGCAACCGGTTTTGGAGGA 1252
|||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct 1079 GGACAAGCAAACTTATTATCAGGTGTGCATTGTTATAACAAAGCAACCGGTTTTGGAGGA 1138
Query 1253 ACCGGGATTTATTTGAGATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCGTATTTG 1312
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACCGGAATTTATTTGAGATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCGTATTTG 1198
Query 1313 GATTATACCGGTATCGTCGCGGAAGATCCGGTTCAGTTACAGATTTCAGGGACGtttttt 1372
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1199 GATTATACCGGTATCGTCGCGGAAGATCCGGTTCAGCTACAGATTTCTGGGACATTTTTT 1258
Query 1373 ttGGGAGATGCGTTTATTTTGTTGAAATCGATAGCCGGA-TATATTCGTGGGGTTAGTAT 1431
||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1259 TTGGGAGATGCGTTTATTTTGTTGAAATCGATAGCCGGAGTGG-TTCGTGGGGTTAATAT 1317
Query 1432 TGTTGACAATATGTTTTCCGGGTCGGGTCATGGGGTCCAGATTGTTCAATTGGATCAGAG 1491
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1318 TGTTGACAATATGTTTTCCGGGTCGGGTCATGGGATCCAGATTGTGCAATTGGATCAGAA 1377
Query 1492 GAACACTGCGTTTGATGACGTTGG-CCAGGTGGTCGTTGACCGTAACAGTGTGAACGGAA 1550
|||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct 1378 GAACACGGCGTTTGAAGACGT-GGACCAGGTGGTTGTTGACCGGAACAGTGTGAACGGAA 1436
Query 1551 TGGTAGAGAAATCGACGGTGGCTAGAGGTTCGGTAGATGGAAACGGGACGTCTTGGACCG 1610
||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1437 TGGGAGAGAGATCGACGGTGGCTAGAGGATCGGTAGATGGAAACGGGACATCTTGGACCG 1496
Query 1611 TTGATTTTAACCCGGTTTTGTTGTTCCCGGATTTAATCAACCACGTGCAGTACACACTTG 1670
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1497 TTGATTTTAACCCGGTTTTGTTGTTCCCGGATTTAATCAAGCACGTGCAGTACACACTCG 1556
Query 1671 TGGCGAGTGAAGCTGGCGTGTTTCCTCTGCACGCGCTAAGGAACGTTTCTGATAACCGGG 1730
||||| |||||||||| | ||||||||| |||||| ||||||||||||||| ||| || |
Sbjct 1557 TGGCGCGTGAAGCTGGTGCGTTTCCTCTACACGCGGTAAGGAACGTTTCTGGTAATCGAG 1616
Query 1731 TGGTCGTTGAGACAAACGCTCCTGTTACTGGGACAGTTTATGTAACAGTGAATCAAGGAG 1790
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1617 TGGTCGTTGAGACAAACGCTCCTGTTACTGCAACAGTTTATGTAACAGTGAATCAAGGAG 1676
Query 1791 TTTAATGTCGTgtttttgccgtt-taatggttttataattttataaaatgatttatactt 1849
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1677 TTTAATGTCGTGTTTTTGCCGTAATAATGGTTTAATAATTTTATAAAATGATTTATACTT 1736
Query 1850 gttggttttt-atttgtaatttttcctgtaagggggaaatttattttttATACAGCTAAT 1908
| |||||||| | |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 1737 GGTGGTTTTTTAATTGTAATTTTTCCTGTAAGGAGGAAATTTATTTTT-ATACTGCTAAT 1795
Query 1909 AAATGATAAAAACTCG 1924
||||||||||||||||
Sbjct 1796 AAATGATAAAAACTCG 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5