BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20070.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946158 jgi|Araly1|946158|scaffold_702387.1 2507 0.0
> Ahg946158 jgi|Araly1|946158|scaffold_702387.1
Length=1630
Score = 2507 bits (1357), Expect = 0.0
Identities = 1544/1632 (95%), Gaps = 22/1632 (1%)
Strand=Plus/Plus
Query 77 CTCTTAAATCGGCAGCCATGGCGGTTCCTCATCCTTCTTCTTCCTCCTCTAGATCTCATC 136
||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 4 CTCTTCAATCGGCAGCCATGGTGGTTCCTCATCCTTCTTCCTCCTCCTCTAGATCTCATC 63
Query 137 CTTTCCTCTCCCATGTCTATCACACTAGCTTCca---tcatcatcat---cat---cat- 186
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 64 CTTTCCTCTCCCATGTCTATCACACTAGCTTCCATCTTCATCATCATAACCATCACCATC 123
Query 187 ---a--atcatccatcGCTTGTGCTCTTCTGGTGCCTCGTGTTttctctattatctcctc 241
| |||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 124 AACATCATCATCCATCGCTTGTACTCTTTTGGTGTCTCGTGTTTTCTCTGTTATCTCCTC 183
Query 242 tcgctctctcatcatcatcttcgtcttcttcttcttcctcagactcgtcgtcatcatcgt 301
|||||||||| || ||||| ||||| |||||||||||||| | |||||||||| || |
Sbjct 184 TCGCTCTCTCCTCTTCATCGTCGTCGTCTTCTTCTTCCTC-TA--CGTCGTCATCGTCAT 240
Query 302 cCTCCCATATCTCT-TTAGGAATCGGTGAAACAGAAGGGACGAAGCATGATCTGCATCAG 360
| || || |||||| || ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 241 CTTCTCAAATCTCTCTT-GGAATCGGTGAAACAGAAGTGACAAAGCATGATCTGCATCAG 299
Query 361 GCGATCCTAAGGGACGAAGCTGTAGCAAGATTACACGAGCTTGGACAGGTGAGTGATGCA 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 GCGATCCTAAGGGACGAAGCTGTAGCAAGGTTACACGAGCTTGGACAGGTGAGTGATGCA 359
Query 421 GCTACCCACT-TAGAGAGGACTTTTATGAGTCCAGCATCCATAAGAGCAATACCTCTTAT 479
| | |||| | |||| ||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 360 GTTGCCCA-TCTAGAAAGGACTTTTATGAGTCCAGCATCAATAAGAGCGATAGATCTTAT 418
Query 480 CCGTGGATGGATGGAAGATGCCGGTTTATCAACATGGGTTGATTACATGGGAAATGTACA 539
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 419 CCGTCGATGGATGGAAGATGCTGGTTTATCAACATGGGTTGATTACATGGGAAATGTGCA 478
Query 540 TGGTCGAGTGGAACCTAAGAATGGAAGTTCACAGGCTCTTCTAATTGGTTCCCATATGGA 599
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TGGTCGAGTGGAACCAAAGAATGGAAGCTCACAGGCTCTTCTAATTGGTTCCCATATGGA 538
Query 600 CACTGTGATTGATGCTGGTAAATATGATGGCTCATTAGGCATCATTTCTGCAATCTCTGC 659
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 CACAGTGATCGATGCTGGTAAATATGATGGCTCACTAGGCATCATTTCTGCAATCTCTGC 598
Query 660 ATTGAAGGTTCTGAAAATAGATGGGAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 719
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 599 ATTGAAGGTTCTGAAAATAAATGGAAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 658
Query 720 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 718
Query 780 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 778
Query 840 AGATGCTCTTAAAGAGAACTCTATAGACATAACAGATGAAAACTTGATGCAGTTGAAGTA 899
||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||
Sbjct 779 AGATGCTCTTAAAGAGAACTCCATAGACATAACAGAGGAAAACTTAATGCAGCTGAAGTA 838
Query 900 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATTGAGCAAGGGCCGGTGCTTGA 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATCGAGCAAGGGCCGGTGCTTGA 898
Query 960 ATGGGTTGGTTATCCTTTAGGTGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGGTTGGTTATCCTTTAGGAGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 958
Query 1020 TACTGTAAAAGGATCTCAAGGACATGCTGGTACAGTTCCAATGTCAATGCGTCAGGACCC 1079
|||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 959 TACTGTTAAAGGCTCTCAAGGACATGCTGGAACAGTTCCAATGTCACTGCGTCAAGACCC 1018
Query 1080 TATGACTGGTGCTGCGGAGCTGATTGTACTATTGGAAAGTGTTTGCAAAAACCCTAAAGA 1139
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 TATGACTGGTGCCGCGGAGCTGATTGTACTATTGGAAAGCGTTTGCAAAAACCCTAAAGA 1078
Query 1140 TTACTTATCTTGCAACGTTCAATGCAACGAGGATACAGTAGAATCCCTTGCTAATTCACT 1199
||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1079 TTACTTATCTTGCAACGGTCAATGCAACGAAGACACAATAGAATCCCTTGCTAATTCACT 1138
Query 1200 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1198
Query 1260 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1258
Query 1320 TGACTTATCAACTAGGATGTACCAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1379
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGACTTATCAACTAGGATGTACAAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1318
Query 1380 ACGAAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTTACAGCTGAAATC 1439
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 ACGCAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTCACAGCTGAAATC 1378
Query 1440 AGCAGCTCAGAGTGCACTTAAGAAGATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1499
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCAGGTCAGAGTGCACTTAAGAAAATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1438
Query 1500 AATGAGTGGAGCAGGACATGATGCAATGGCTATGGCACACTTAACCAAGGTGGGAATGTT 1559
|||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 1439 AATGAGTGGAGCAGGACATGATGCTATGGCTATGGCTCATTTAACTAAGGTGGGAATGTT 1498
Query 1560 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTATTGGATGACGA 1619
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1499 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTGTTAGATGACGA 1558
Query 1620 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAC 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAG 1618
Query 1680 AAATATATGAGA 1691
||||||||||||
Sbjct 1619 AAATATATGAGA 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5