BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20080.1
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492863 jgi|Araly1|492863|fgenesh2_kg.7__2296__AT4G20080.1 3657 0.0
Ahg494505 jgi|Araly1|494505|fgenesh2_kg.8__321__AT5G44760.1 126 6e-28
> Ahg492863 jgi|Araly1|492863|fgenesh2_kg.7__2296__AT4G20080.1
Length=2331
Score = 3657 bits (1980), Expect = 0.0
Identities = 2219/2335 (95%), Gaps = 14/2335 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTGAACGGTACCGGTAACGG-AACCGGT----G--ACGGCGATTTCTCATTGAA 53
||||||| |||||||||||| ||||| || |||| | ||||||||||||| |||||
Sbjct 1 ATGGCGGCGAACGGTACCGGAAACGGTAA-CGGTAACAGTAACGGCGATTTCTCGTTGAA 59
Query 54 AGAGACATCTCCCAATATCGGCAATGGTGGTGTTAACGGCGGCGAGAAGCTGACGTCATC 113
|||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 60 AGAGACATGTCCAAATATCGGCAATGGTGGTGGTAAAGGCGGCGAGAAGCTGACGTCATC 119
Query 114 GTTCGATCTTGTGGAGGCGATGCATTTCCTCTACGCTAGAATTGTCCGTGCTCGAGCCTT 173
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 120 GTTCGATCTCGTGGAAGCGATGCATTTCCTCTACGCTAGAATCGTCCGTGCTCGAGCTTT 179
Query 174 ACCGGTCAACGACTCTTTCGTCGCAGTCAAAATCGGAAGCTACAAAGGAAGAACAAAACA 233
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ACCGGTCAACGACTCCTTCGTCGCAGTCAAAATCGGAAGCTATAAAGGAAGAACAAAACA 239
Query 234 GATCTTAAACTCAAACCCTAACCCTGAGTTTCACGAAACCTTCGCATTCACGAAAACTCG 293
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GAGCTTAAACTCAAACCCTAACCCTGAGTTTCACGAAACCTTCGCCTTCACGAAAACTCG 299
Query 294 TCTTCAAGGGGATATCTTAGAAGTGGTCGTGCGAAACAGAGATAA-CCCAAACGAAGACG 352
|||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 300 TCTTCAAGGGAATATCTTAGAAGTGGTCGTACGAAACAGAGATAATGCC-AACGAAGACG 358
Query 353 ATATTGTCGGGAAATGTAAGTTCGATGTTGCGGAGATTCCGACACGTGTTCCTCCTGATA 412
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ATATTGTCGGGAAATGTAGGTTCGATGTGGCGGAGATTCCGACACGTGTTCCTCCTGATA 418
Query 413 GTCCATTGGCTCCTCAATGGTATAGATTGGAAGATAGAAACGGTGTCAAGATCGGTGGAG 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 GTCCGTTGGCTCCTCAATGGTATAGATTGGAAGATAGAAACGGTGTCAAGATCGGAGGAG 478
Query 473 AGATTATGGTATCTGTTTGGATTGGGACACAAGCTGATGAAGTTTTCTCGGAGGCTTGGC 532
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 AGATTATGTTATCTGTTTGGATTGGGACACAAGCTGATGAAGTTTTCTCTGAGGCTTGGC 538
Query 533 ATTCGGATTCGGCGAGTGTTACCGGAGAAAACGTGGTGAACACGCGATCTAAAGTTTATC 592
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTCGGATTCGGCGACTGTCACCGGAGAAAACGTGGTGAACACGCGATCTAAAGTTTATC 598
Query 593 TTTCACCGAGGCTTTGGTACTTGCGAGTTAATGTAATCGAAGCTCAGGATTTGGTTCTGT 652
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 599 TTTCACCGAGGCTTTGGTACTTGCGAGTTAATGTAATTGAAGCTCAGGATTTGGTTCCGT 658
Query 653 TGCACCCGAACCGGATCAATCCAGAGATTCTGATTAAAGGGTTTCTTGGAAACGTTGTTG 712
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCATCAGAACCGGATCAATCCAGAGATTCTGATTAAAGGGTTTCTTGGAAACGTTGTTG 718
Query 713 TGAGGAGTCGGATTTCGCAGACGAAGAGTGTGAGTCCTGTGTGGAACGAGGATATGATGT 772
|||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||
Sbjct 719 TGAGGAGTCGGATTTCGCAGACGAGGAGTGTGAATCCTGTTTGGAATGAGGATATGATGT 778
Query 773 TTGTAGCGGTTGAGCCGTTTGATGACAGTTTGATACTTAGCGTGGAAGATAAGGTAGGGC 832
|||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 779 TTGTAGCGGTTGAGCCGTTTGAAGATAGTTTGATACTTAGCGTTGAAGACAAGGTAGGGC 838
Query 833 CGAGAGAAGAGTGTTTAGGAAGGTGTGAGATAAAGTTATCTCAGGTTGAGAGAAGGGTGC 892
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 CGAGAGAAGAGTGTTTAGGAAGGTGTGAGATAAAGCTATCTCAGGTTGAGAGAAGGGTGA 898
Query 893 TTCCTGGTCCGGTGCCGTCATTGTGGTACAACGTTGAACACATTGGTGAGACCGGAGAAG 952
||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 899 TTCCTGGTCCGGTCCCGGCATTGTGGTACAACGTGGAACACATTGGTGAGACTGGAGAAA 958
Query 953 GGAGGAGATTTGCTGGGAGGATTCATTTGCGGGTTTCTTTAGACGGAGGTTATCACGTTC 1012
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 TGAGGAGATTTGCCGGGAGGATTCACTTGCGGGTTTCTTTAGACGGAGGTTATCACGTTC 1018
Query 1013 TTGATGAGTCGATTCAGTATAGCAGCGATTACAGAGCTTCAGCTAAGCTTCTATGGACTC 1072
| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1019 TAGATGAATCGATTCAGTATAGCAGCGATTACAGAGCTTCTGCTAAACTTCTATGGACTC 1078
Query 1073 CACCTATTGGTGTGTTGGAGCTAGGAGTTTTAAATGCTACGGGTTTAATGCCGATGAAGT 1132
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1079 CAGCTATTGGTGTGTTGGAGCTAGGAGTGTTAAATGCTACGGGTTTAGTGCCGATGAAGT 1138
Query 1133 CAAGAGGTGGCCGAGGAACTACCGATGCGTATTGTGTGGCGAAATACGGAACAAAATGGG 1192
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1139 CAAGAGATGGTCGAGGAACTACCGATGCGTATTGTGTGGCTAAATACGGAACAAAATGGG 1198
Query 1193 TGAGAACGAGGACCATTGTGGACACTTTCGATCCAAAGTGGAATGAGCAGTATACTTGGG 1252
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1199 TGAGAACGAGGACGATTGTGGATACTTTCGATCCAAAGTGGAACGAGCAGTATACTTGGG 1258
Query 1253 AAGTCTATGATCCTTACACGGTGATAACAATCGGTGTCTTCGATAATCTGAAATTGTTTG 1312
||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct 1259 AAGTCTATGATCCTTACACAGTAATAACAATCGGCGTCTTCGATAATCTGAATTTGTTTG 1318
Query 1313 GTGCGGGTAACGAAAACCGTTTGATCAACGATTCAAGGATTGGGAAGATCAGGATACGTT 1372
|||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 GTGCTGGTAACCAAAACCGCTTGATCAACGATTCAAGGATTGGGAAGATTAGGATACGTT 1378
Query 1373 TATCGACCCTTGTAACCTCGAAGATCTACACACATTCTTATCCTTTAATGGTTTTAAAAC 1432
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 1379 TATCGACCCTTGTAACCTCGAAGATCTACACACATTCTTACCCTTTAGTCGTTTTAAAAC 1438
Query 1433 CAGACGGGGTTaaaaaaaTGGGTGAGATTCAGCTCGCGGTTAGGTTCACCGCGACATCTA 1492
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 CAGACGGGGTTAAGAAAATGGGTGAGATTCAGCTGGCGGTTAGGTTCACCGCGACATCTA 1498
Query 1493 TGATGGATATGCTTCAGAAGTACACAGAGCCGTTGCTTCCAGAAATGCATTACATATCTC 1552
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1499 TGATCGATATGCTTCAGAAATACTCAGAGCCGTTGCTTCCAGAAATGCATTACATATCTC 1558
Query 1553 CATTGTCTATATACCAATTAGACAGTCTTAGGCACCAAGCGACCCACATTCTCTGCATCA 1612
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1559 CATTGTCTATTTACCAATTAGACAGCCTTAGGCACCAAGCGACTCACATTCTCTGCATAA 1618
Query 1613 A-CTTAGGGCGCAACGAGCCAGCACTTGGAAGAGATGTTGTAGAGTATATGCTCGATGTG 1671
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AGC-TAGGGCGCAATGAGCCAGCACTTGGAAGAGATGTTGTAGAGTATATGCTCGATGTG 1677
Query 1672 GGATCAAACATTTGGAGTCTACGAAGAGGAAGAGCGAATTTCGAACGTCTTGTCTCGTTT 1731
||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 1678 GGATCAAACATTTGGAGTCTAAGAAGAGGAAGAGCAAATTTTGAACGTCTTGTCTCGTTT 1737
Query 1732 TTCGATGGCTGGATCGATGCTTGGAAATGGTTTGATGAGATTTGCAAATGGAAAAGTCCC 1791
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1738 TTCGATGGCTGGATGGATGCTTGGAGATGGTTTGATGAGATTTGCAAATGGAAAAGTCCC 1797
Query 1792 GTGACGTCGGTTTTAGTCCATATTGTCTGCTTGTTCGTTGTTTTTCTCCCTAAGTACTGT 1851
|||||| |||||||| |||||||||||| ||||||| ||||||| ||||| |||||||||
Sbjct 1798 GTGACGACGGTTTTAATCCATATTGTCTTCTTGTTCATTGTTTTCCTCCCCAAGTACTGT 1857
Query 1852 GTTTTCTCGATGCTACTGTACTGCTTCGTGTTTGGGTTATACAGGTTCGGTTTGAGACCG 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GTTTTCTCGATGCTACTGTACTGCTTCGTGTTTGGGTTATACAGGTTCGGTTTGAGACCG 1917
Query 1912 AGACATCCTCCACATATGGATATAAAGCTGTCTAAAGCTGATTCAGCTTTGCCCGATGAG 1971
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AGACATCCTCCACACATGGATATAAAGCTGTCTAAAGCTGATTCAGCTTTGCCCGATGAG 1977
Query 1972 CTAGACGAGGAGTTTGATGTGTTTCCAAGCTCGAAATCCGGTGATGTACTGAA-AAGAAG 2030
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||
Sbjct 1978 CTAGACGAGGAGTTTGATGTGTTTCCAAGCGCGAAATCCGGTGATATACTGAAGAA-AAG 2036
Query 2031 GTATGATAGGTTGCGTGGGATCGCAGGGAGGATGATGATTGTGTTGGGAGATTTGGCTAC 2090
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2037 GTATGATAGGTTGCGTGGGATCGCAGGAAGGATGATGATTGTGTTGGGAGATTTGGCTAC 2096
Query 2091 ACAAGGAGAAAGAGTGAAAAGTTTGTTGAGTTGGAGAGATCCAAGAGCAACGTCTCTGTT 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 ACAAGGAGAAAGAGTGAAAAGTTTGTTGAGTTGGAGAGATCCAAGAGCAACGTCTCTGTT 2156
Query 2151 CTTGACGTTCTGTTTTGTTAGCTGTGGAGTGATTTGTTTCGTCTCCATGAAGTTACTGCT 2210
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 CTTGGCGTTCTGTTTTGTTAGCTGTGGAGTGATTTGTTTCGTCTCCATGAAGTTACTGCT 2216
Query 2211 CACATTTCTTGCGTTCTACGTCATGAGACATCCTAGGGTTAGAGTTTTCGATATACCTTC 2270
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2217 CACGGTTCTTGCGTTCTACGTCATGAGACATCCTAGGGTTAGGGTTTTCGATATACCTTC 2276
Query 2271 TATTCCTCAGAATTTCTTCAGGAGATTACCATCAAGAGCTGATAGCATCTTGTGA 2325
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2277 TATTCCTCAGAATTTTTTCAGGAGATTACCATCAAGAGCTGATAGCATCTTGTGA 2331
> Ahg494505 jgi|Araly1|494505|fgenesh2_kg.8__321__AT5G44760.1
Length=1413
Score = 126 bits (68), Expect = 6e-28
Identities = 127/155 (82%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 1639 GGAAGAGATGTTGTAGAGTATATGCTCGATGTGGGATCAAACATTTGGAGTCTACGAAGA 1698
||||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||||
Sbjct 1090 GGAAGAGATGTAGTTGAGTATATGCTCGATTTTGGATCTAACATTTGGAGTTTACGAAGA 1149
Query 1699 GGAAGAGCGAATTTCGAACGTCTTGTCTCGTTT-TTCG--ATGGCTGGATCGATGCTTGG 1755
|||||||||||||||||||| |||| | ||| ||| ||| | || ||| |||||
Sbjct 1150 GGAAGAGCGAATTTCGAACGAATTGTGAC-TTTCTTCACCATGTTT--ATTGATTCTTGG 1206
Query 1756 AAATGGTTTGATGAGATTTGCAAATGGAAAAGTCC 1790
| ||||||||| | | ||||||||||| |||||
Sbjct 1207 ATTTGGTTTGATTCGGTATGCAAATGGAAGAGTCC 1241
Score = 71.3 bits (38), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 2173 TGTGGAGTGAT-TTGTTTCGTCTCCATGAAGTTACTGCTCACATTT-CTTGCGTTCTACG 2230
|||||||| || || || ||||||||||| | ||| | || ||| |||||||||||||
Sbjct 1340 TGTGGAGTAATCTT-CTTAGTCTCCATGAAACTGCTGATGAC-TTTGCTTGCGTTCTACG 1397
Query 2231 TCATGAGACATCCTAG 2246
||||||||||||||||
Sbjct 1398 TCATGAGACATCCTAG 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87569473255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5