BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20095.3 Length=1152 Score E Sequences producing significant alignments: (Bits) Value Ahg492861 jgi|Araly1|492861|fgenesh2_kg.7__2294__AT4G20095.3 1325 0.0 Ahg949822 jgi|Araly1|949822|scaffold_801709.1 62.1 9e-09 > Ahg492861 jgi|Araly1|492861|fgenesh2_kg.7__2294__AT4G20095.3 Length=1063 Score = 1325 bits (717), Expect = 0.0 Identities = 965/1079 (89%), Gaps = 39/1079 (4%) Strand=Plus/Plus Query 13 AGAATAGCCTTTAAACCCAATCTTCTATTCTCTAAGGTCTAACAAGCTATCATCAAGCTT 72 ||||||||||| ||||||||||||||||||| |||||||||| |||| | ||||| ||| Sbjct 1 AGAATAGCCTTAAAACCCAATCTTCTATTCTTTAAGGTCTAAGAAGC--T-ATCAACCTT 57 Query 73 ATTTATTTGTCTTTTTCTCACCGATTACGAAACACTGAATCCATTGTATA-TTCTTCTTG 131 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 58 ATTTATTTGTCTTTTTCCCACCGATTACGAAACACTGAATCCATTGTATATTTCTTCTTG 117 Query 132 CGATCTCGTCAAATTTCATAGGTGAAGAAGGGTTTAT---ATATTTGCCAAGAAATGGGT 188 ||| ||| |||||||||||||||||||||| |||||| || ||||||||||||||||| Sbjct 118 CGACCTCCTCAAATTTCATAGGTGAAGAAGTGTTTATGGAATCTTTGCCAAGAAATGGGT 177 Query 189 AACGGAATGTGGAAGCAAGAAGCCAGAGACTTGGTCGAGGAACCATCGCAGAGTAATGAG 248 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 178 AACGGAATGTGGAATCAAGAAGCCAGAGACTTGACCGAGGAACCATCGCAGAGTAATGTG 237 Query 249 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCT 308 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 238 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATTCTCCATCCCACGACATGTTTGGGTT 297 Query 309 AATCGGAGAGAAGAAAAGTTTGATTATAACAAATACTACATTA-AACAAAGGGCTGACAT 367 |||||||||||| || ||||||| | | |||||||||| | |||||||||||||||| Sbjct 298 CATCGGAGAGAAG--AA-TTTGATTCTTATAAATACTACA-AACAACAAAGGGCTGACAT 353 Query 368 TGCAAAATATGGAGGACCTCATCCAAATA-TAATCCTCTTCGGTAGAGTTGGACTTCATT 426 |||||||||| |||||||||||||| | || ||||||||||||||||||||||||||| Sbjct 354 TGCAAAATAT---GGACCTCATCCAAA-ACTAGTCCTCTTCGGTAGAGTTGGACTTCATT 409 Query 427 GCTACAATCTGCAAAATGGCACAAACTTACAAT-TTCTGACTGTACACAATTTTGAC--- 482 |||||||||||||||| || ||||||||||||| || ||| ||||| |||||||||| Sbjct 410 GCTACAATCTGCAAAAGGGAACAAACTTACAATATT-TGAGTGTACTCAATTTTGACAGA 468 Query 483 --TC-ATGGATAACCTCGATTCTTT-CTCATTTCATAAGTTTGGAGGCAATGGATCCAGT 538 || |||| ||||||| ||| ||| | | | ||||| |||||||| |||||||||||| Sbjct 469 TATCAATGGGTAACCTCAATT-TTTAGTTACTGCATAACTTTGGAGGTAATGGATCCAGT 527 Query 539 AGACAATTCGATCTGTGAGTTCGAAACGCACGTTAGGTATGCCGTTGAGAATAAACACTG 598 |||||||||||| |||||||||||| |||| |||||| |||| |||||||||||| || Sbjct 528 AGACAATTCGATTTGTGAGTTCGAAGCGCAAGTTAGGCATGCGGTTGAGAATAAAGGTTG 587 Query 599 CTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGAGGAGGAAGACAC 658 |||||| |||||||||| ||| ||||| ||||||| |||| ||||||||||||||||| Sbjct 588 CTTGAGTGCAATTACAACTGGATGCAGATTAAAGCCTAAAACTCCAGAGGAGGAAGACAA 647 Query 659 ATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTG 718 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 648 ATATTTTTTATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGATATGCCCGAGTG 707 Query 719 GATGCC-GGAAGATGCACTAACGGGAAGGGACAAGCTGCAATACTATGAGATGAAAGATT 777 ||| || |||||||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 708 GAT-CCGGGAAGATGCACTGACGGGAAGCGATAAGCTGCAATACTATGAGATGAAAGATT 766 Query 778 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCA 837 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 767 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCTTTGTTCTCCA 826 Query 838 AACTGCA--TG----C-GCATGCGCTGGAGTC-TGCAAAGCCATTTGAGATGAAGAAGAT 889 || || | | | | ||||||||||| | ||||||||| ||| ||||||||||||| Sbjct 827 AA-TGGAAATCTAAACTGGATGCGCTGGAG-CATGCAAAGCCTTTTAAGATGAAGAAGAT 884 Query 890 AGTTGTGAGAACCAAAGCAAACGTGGAGTCGAAGAAGAAGGTGAAGGCGGAGAATGCAAT 949 ||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||||||| Sbjct 885 TGTTGTAAGAACCAAAGAAAATGCGGAGTCGAAGAAGAAGGTGAAGGCCGAGAATGCAAT 944 Query 950 CTTCTACACTAGCTTCAGAACCCGTTGTGGTCGAGACTGCAATTGTATAATAAGGAGAAC 1009 |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||| Sbjct 945 CTTCTACATTAGCTTCAAAACCCGTTGTGGTCGAGACTGCAATTGTATCATAAGGAAAAC 1004 Query 1010 GACTGATGGAAAGCGAGACCATTTTTCTCTTGAAGTCAAATGTTTCTTGTGAGAGTAGT 1068 ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1005 AACTGATGGAAAGCCAGACCATTTTTCTCTTGAAGTCAAGTGTTTCATGTGAGAGTAGT 1063 > Ahg949822 jgi|Araly1|949822|scaffold_801709.1 Length=1076 Score = 62.1 bits (33), Expect = 9e-09 Identities = 37/39 (95%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 402 CTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAA 440 ||||| |||| |||||||||||||||||||||||||||| Sbjct 414 CTCTTTGGTAAAGTTGGACTTCATTGCTACAATCTGCAA 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42964527459 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5