BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20095.3
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492861 jgi|Araly1|492861|fgenesh2_kg.7__2294__AT4G20095.3 1325 0.0
Ahg949822 jgi|Araly1|949822|scaffold_801709.1 62.1 9e-09
> Ahg492861 jgi|Araly1|492861|fgenesh2_kg.7__2294__AT4G20095.3
Length=1063
Score = 1325 bits (717), Expect = 0.0
Identities = 965/1079 (89%), Gaps = 39/1079 (4%)
Strand=Plus/Plus
Query 13 AGAATAGCCTTTAAACCCAATCTTCTATTCTCTAAGGTCTAACAAGCTATCATCAAGCTT 72
||||||||||| ||||||||||||||||||| |||||||||| |||| | ||||| |||
Sbjct 1 AGAATAGCCTTAAAACCCAATCTTCTATTCTTTAAGGTCTAAGAAGC--T-ATCAACCTT 57
Query 73 ATTTATTTGTCTTTTTCTCACCGATTACGAAACACTGAATCCATTGTATA-TTCTTCTTG 131
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 58 ATTTATTTGTCTTTTTCCCACCGATTACGAAACACTGAATCCATTGTATATTTCTTCTTG 117
Query 132 CGATCTCGTCAAATTTCATAGGTGAAGAAGGGTTTAT---ATATTTGCCAAGAAATGGGT 188
||| ||| |||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 118 CGACCTCCTCAAATTTCATAGGTGAAGAAGTGTTTATGGAATCTTTGCCAAGAAATGGGT 177
Query 189 AACGGAATGTGGAAGCAAGAAGCCAGAGACTTGGTCGAGGAACCATCGCAGAGTAATGAG 248
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 178 AACGGAATGTGGAATCAAGAAGCCAGAGACTTGACCGAGGAACCATCGCAGAGTAATGTG 237
Query 249 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCT 308
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 238 AAGCTGGAAGATCAGAGACCACAAGAATCTTCATTCTCCATCCCACGACATGTTTGGGTT 297
Query 309 AATCGGAGAGAAGAAAAGTTTGATTATAACAAATACTACATTA-AACAAAGGGCTGACAT 367
|||||||||||| || ||||||| | | |||||||||| | ||||||||||||||||
Sbjct 298 CATCGGAGAGAAG--AA-TTTGATTCTTATAAATACTACA-AACAACAAAGGGCTGACAT 353
Query 368 TGCAAAATATGGAGGACCTCATCCAAATA-TAATCCTCTTCGGTAGAGTTGGACTTCATT 426
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 354 TGCAAAATAT---GGACCTCATCCAAA-ACTAGTCCTCTTCGGTAGAGTTGGACTTCATT 409
Query 427 GCTACAATCTGCAAAATGGCACAAACTTACAAT-TTCTGACTGTACACAATTTTGAC--- 482
|||||||||||||||| || ||||||||||||| || ||| ||||| ||||||||||
Sbjct 410 GCTACAATCTGCAAAAGGGAACAAACTTACAATATT-TGAGTGTACTCAATTTTGACAGA 468
Query 483 --TC-ATGGATAACCTCGATTCTTT-CTCATTTCATAAGTTTGGAGGCAATGGATCCAGT 538
|| |||| ||||||| ||| ||| | | | ||||| |||||||| ||||||||||||
Sbjct 469 TATCAATGGGTAACCTCAATT-TTTAGTTACTGCATAACTTTGGAGGTAATGGATCCAGT 527
Query 539 AGACAATTCGATCTGTGAGTTCGAAACGCACGTTAGGTATGCCGTTGAGAATAAACACTG 598
|||||||||||| |||||||||||| |||| |||||| |||| |||||||||||| ||
Sbjct 528 AGACAATTCGATTTGTGAGTTCGAAGCGCAAGTTAGGCATGCGGTTGAGAATAAAGGTTG 587
Query 599 CTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGAGGAGGAAGACAC 658
|||||| |||||||||| ||| ||||| ||||||| |||| |||||||||||||||||
Sbjct 588 CTTGAGTGCAATTACAACTGGATGCAGATTAAAGCCTAAAACTCCAGAGGAGGAAGACAA 647
Query 659 ATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTG 718
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 ATATTTTTTATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGATATGCCCGAGTG 707
Query 719 GATGCC-GGAAGATGCACTAACGGGAAGGGACAAGCTGCAATACTATGAGATGAAAGATT 777
||| || |||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 708 GAT-CCGGGAAGATGCACTGACGGGAAGCGATAAGCTGCAATACTATGAGATGAAAGATT 766
Query 778 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCATTGTTCTCCA 837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 767 CAGAGTTAGAAGAAGAGAAGGAATGGCTTCATCTATACGCGGAACTCGCTTTGTTCTCCA 826
Query 838 AACTGCA--TG----C-GCATGCGCTGGAGTC-TGCAAAGCCATTTGAGATGAAGAAGAT 889
|| || | | | | ||||||||||| | ||||||||| ||| |||||||||||||
Sbjct 827 AA-TGGAAATCTAAACTGGATGCGCTGGAG-CATGCAAAGCCTTTTAAGATGAAGAAGAT 884
Query 890 AGTTGTGAGAACCAAAGCAAACGTGGAGTCGAAGAAGAAGGTGAAGGCGGAGAATGCAAT 949
||||| |||||||||| ||| | |||||||||||||||||||||||| |||||||||||
Sbjct 885 TGTTGTAAGAACCAAAGAAAATGCGGAGTCGAAGAAGAAGGTGAAGGCCGAGAATGCAAT 944
Query 950 CTTCTACACTAGCTTCAGAACCCGTTGTGGTCGAGACTGCAATTGTATAATAAGGAGAAC 1009
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 945 CTTCTACATTAGCTTCAAAACCCGTTGTGGTCGAGACTGCAATTGTATCATAAGGAAAAC 1004
Query 1010 GACTGATGGAAAGCGAGACCATTTTTCTCTTGAAGTCAAATGTTTCTTGTGAGAGTAGT 1068
||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1005 AACTGATGGAAAGCCAGACCATTTTTCTCTTGAAGTCAAGTGTTTCATGTGAGAGTAGT 1063
> Ahg949822 jgi|Araly1|949822|scaffold_801709.1
Length=1076
Score = 62.1 bits (33), Expect = 9e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 402 CTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAA 440
||||| |||| ||||||||||||||||||||||||||||
Sbjct 414 CTCTTTGGTAAAGTTGGACTTCATTGCTACAATCTGCAA 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5