BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20100.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946154 jgi|Araly1|946154|scaffold_702383.1 1221 0.0
Ahg934925 jgi|Araly1|934925|scaffold_402913.1 429 2e-119
> Ahg946154 jgi|Araly1|946154|scaffold_702383.1
Length=898
Score = 1221 bits (661), Expect = 0.0
Identities = 789/850 (93%), Gaps = 11/850 (1%)
Strand=Plus/Plus
Query 1 ATGATTCGAGATGATTTGTCACTATCTCTTGGTATCATCAGTGTTATCAGTTGGAGTGTT 60
||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 21 ATGTTTCGAGATGAATTGTCATTATCTCTTGGTATCATCAGTGTTATTAGTTGGAGTGTT 80
Query 61 GCCGAGATACCGCAGATTATGACTAACTACAATCAA-AAGTCCATTGAAGGAGTCTCTAT 119
||||||||||||||||||||||||||||||| | || || ||||||||||| ||||||||
Sbjct 81 GCCGAGATACCGCAGATTATGACTAACTACAGT-AACAAATCCATTGAAGGTGTCTCTAT 139
Query 120 AACCTTCTTAACAACATGGATGCTTGGTGATATCTTTAATGTTGTTGGCTGCTTGATGGA 179
| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 140 AGCCTTCTTAACGACATGGATGCTTGGAGATATCTTTAATGTTGTTGGTTGCTTGATGGA 199
Query 180 ACCAGCTAGTCTTCCAGTTCAATTCTACACGGCAGTGTTGTATACTCTGGCTACACTTGT 239
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 200 ACCAGCTAGTCTTCCAGTACAATTCTACACGGCAGTGTTGTATACACTGGCTACACTTGT 259
Query 240 TCTCTATGTTCAATCTATATACTACGGGCATATTTACCCGCGGTTGATGAAAAACCGAAG 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCTCTATGTTCAATCTATATATTACGGGCATATTTACCCGCGGTTGATGAAAAACCGAAG 319
Query 300 GAATCATCA-GA--TGGTTGATGTAGAAGAGCCTTTGCTTCGTGAAGAAGCTAAGCGTCC 356
||||||||| | |||||||||| ||| |||||||||||| ||| ||||||||||||||
Sbjct 320 GAATCATCATCATGTGGTTGATGTGGAACAGCCTTTGCTTCATGAGGAAGCTAAGCGTCC 379
Query 357 TTCTACCAAATCGTTGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGATCATTCAACGT 416
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 380 TTCTACCAAATCGATGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAATTT 439
Query 417 ATTGAGTGGTTCAAGAAGTATGGATTTGAGAGGGAAAGATAGAGTGTTTGTAGTTGGAGG 476
|| ||||| |||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 440 GTTAAGTGGATCAAGAAGTATGGATTTGAGAGAGAAAGATAGAGTGTTTGCAGTT----G 495
Query 477 AGCAGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGAAAACAACAATAT 536
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 496 -G-AGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGAAAGTAGCGATAT 553
Query 537 TGGAATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAAT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CGGAATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAAT 613
Query 597 ATGTATGAATGTAAGGAGAGGAAATGTTGAGGGATTGAATCCATTAATGTTCTTCTTTGC 656
|||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 614 ATGTATGAATATAAGAAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGC 673
Query 657 ATTCATTGGCAATGTGACTTATGTTGCAAGCATACTAGTGAACAGCGTCGAATGGTCGAA 716
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 674 ATTCGTTGGCAATGTGACTTATGTTGCAAGCATACTTGTGAACAGTGTCGAATGGTCGAA 733
Query 717 AATCGAACCGAATCTACCATGGCTAGTTGATTCAGGAGGATGTGCTGTTCTTGATTTTCT 776
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 734 AATCGAACCAAATCTACCATGGCTTGTTGATTCTGGAGGATGTGCTGTGCTTGATTTTCT 793
Query 777 TATTCTGCTTCAGTTTTTCTACTTTCACTGTCGCAAAGTCGAGGCAGATTCCGTCAAGAA 836
|||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||
Sbjct 794 TATTCTGCTTCAGTTTTTTTACTTTGGCTGTCGCAAAGTCGAGAAAGATTCCGACAAGAA 853
Query 837 GAAGCATGAA 846
||||||||||
Sbjct 854 GAAGCATGAA 863
> Ahg934925 jgi|Araly1|934925|scaffold_402913.1
Length=1183
Score = 429 bits (232), Expect = 2e-119
Identities = 443/539 (82%), Gaps = 38/539 (7%)
Strand=Plus/Plus
Query 354 TCCTTCTACCAAATCGTTGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGATCATTCAA 413
|||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||||
Sbjct 638 TCCTTCCACCAAATCAATGCTTTGCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAA 697
Query 414 -CGT----A-TTG---AGTGGTTCAAGAAGTATGGATTTGAGAGGGAAAGATAGAGTGTT 464
| | | ||| |||| ||||| | ||||| |||| | | || ||||||||| ||
Sbjct 698 CCTTCCCAATTTGCTAAGTGAATCAAGGACTATGGCTTTGGGTGAGAGAGATAGAGTATT 757
Query 465 TGTAGTTGGAGGAGCAGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGA 524
||||||| |||| |||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 758 TGTAGTT---CGAGC---AGCAAGAAAGCTTTTGCAGGTCACTAGCAACAACCTAGGAGA 811
Query 525 A-A-A-C--------AA-CA--A-TATTGGAATGTGGTTGGGTTGGGCAATGGCGGCGAT 569
| | | | || || | |||||||||| ||||||||||||||||| || ||
Sbjct 812 ACATAGCGGTGGAGAAAGCAGCAGAATTGGAATGTTTTTGGGTTGGGCAATGGCAGCCAT 871
Query 570 TTACATGGGTGGAAGGCTTCCTCAAATATGTATGAATGTAAGGAGAGGAAATGTTGAGGG 629
||||||||||||||||||||| ||||||||| | ||| | ||||||||| ||||||||||
Sbjct 872 TTACATGGGTGGAAGGCTTCCCCAAATATGTCTCAATATGAGGAGAGGACATGTTGAGGG 931
Query 630 ATTGAATCCATTAATGTTCTTCTTTGCATTCA-TTGGCAATGTGACTTATGTTGCAAGCA 688
|||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||| |
Sbjct 932 ATTGAATCCATTGATGTTCTTCTTTGCATT-AGTTGGCAATATGACTTATGTTGCAAGTA 990
Query 689 TACTAGTGAACAGCGTCGAATGGTCGAAAATCGAACCGAATCTACCATGGCTAGTTGATT 748
|||| || |||||||||||||||| ||||| | |||||||||||||||||| ||||||
Sbjct 991 TACTTGTAAACAGCGTCGAATGGTTAAAAATTGCACCGAATCTACCATGGCTTGTTGATG 1050
Query 749 CAGGAGGATGTGCTGTTCTTGATTTTCTTATTCTGCTTCAGTTTTTCTACTTTCACTGTC 808
|||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||||
Sbjct 1051 CAGGAGGATGTGTTGTGCTTGATTTTCTTATTCTGCTTCAGTTTTTCCACTTCCGCTGTC 1110
Query 809 GCAAAGTCGAGGCAGATTCCGTCAAGAAGAAGCATGAAACCGGTGAAGAAGCTGTCTAA 867
|||||| | | |||| | | |||||||||||||||||| || |||||| ||||||
Sbjct 1111 GCAAAGACAA---AGATACTGACAAGAAGAAGCATGAAAC---TGCAGAAGCGGTCTAA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5