BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20110.2
Length=2405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1 3085 0.0
Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513 628 4e-179
Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267 488 7e-137
Ahg931204 jgi|Araly1|931204|scaffold_303661.1 230 5e-59
Ahg938176 jgi|Araly1|938176|scaffold_502367.1 213 5e-54
> Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1
Length=2273
Score = 3085 bits (1670), Expect = 0.0
Identities = 1952/2085 (94%), Gaps = 32/2085 (2%)
Strand=Plus/Plus
Query 328 TTCAGAGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCGGCGTTGAC 387
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 213 TTCAGTGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCAACGTTGAC 272
Query 388 CATCATCGCTATGGTCGTCGAGGCTAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 447
||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 273 CATCATCGCGATGGTCGTTGACGCGAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 332
Query 448 GAATCCAGAGGAGATGAGGTCGAAGCACGACGGCTCGATAGCCAATTTCGGTTTACCCGA 507
||||| ||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||
Sbjct 333 AAATCCCGAGGAGATGAGGTCGAAGCGCGACGGTTCGATAGCCAACTTCGGGTTACCCGA 392
Query 508 TTACGGTGGGTTTTTAATCGGGTCAGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 567
|||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 393 TTACGGCGGGTTTCTAATAGGGTCGGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 452
Query 568 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 512
Query 628 TGGAGGTTGCTACTTTGCCTTAAAAGCGTGGCACGCGCAGCAAGCAGGCGCGGCTGCAGT 687
||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 513 TGGAGGTTGTTACTTTGCCTTAAAAGCGTGGCACGCTCAGCAAGCAGGCGCCGCGGCAGT 572
Query 688 TCTTGTGGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGAGCAA 747
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 573 TCTTGTGGCGGATAATGTAGATGAGCCATTGTTAACAATGGATTCACCAGAGGAGAGCAA 632
Query 748 AGATGCGGATGGTTTCATAGAGAAGCTAACAATCCCATCGGTGTTAATCGATAAATCATT 807
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 633 AGATGCAGATGGGTTCATAGAGAAGCTAACAATCCCATCGGTTTTAATCGATAAATCGTT 692
Query 808 TGGAGATGACTTAAGACAAGGGTTTCAGAAAGGGAAAAACATAGT-TATAAAACTAGATT 866
||||||||||||||| |||||||||||||||| ||||||||||| | | ||||||||||
Sbjct 693 CGGAGATGACTTAAGAAAAGGGTTTCAGAAAGGTAAAAACATAGTCT-TGAAACTAGATT 751
Query 867 GGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGCA 926
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 752 GGAGAGAATCTGTGCCTCATCCTGATCAGCGAGTAGAATATGAGCTGTGGACTAATAGCA 811
Query 927 ATGATGAGTGTGGTGCACGGTGTGATGAACAGATGGACTTTGTCAAGAACTTTAAAGGTC 986
| || ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 812 ACGACGAGTGTGGTGCACGGTGCGATGAACAGATGGATTTTGTCAAGAACTTTAAGGGTC 871
Query 987 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCGCATTATATTACTTGGT 1046
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 872 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCACATTATATCACATGGT 931
Query 1047 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 991
Query 1107 GGTATTGTGCTCCTGACCCTGAGGATAATTTCAGAGAAGGGTATGAAGGGAAAGATGTTG 1166
||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||
Sbjct 992 GGTATTGTGCTCCTGACCCTGAGAACAATTTCAGAGAAGGTTATGAAGGCAAAGATGTTG 1051
Query 1167 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCAGGCCTT 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1052 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCCGGCCTT 1111
Query 1227 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCTCGATGTTCGATGAAGGAGAAGAAAT 1286
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1112 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCGCGATGTTCGATGAAGGAGAAGAAAT 1171
Query 1287 ACAGCATAGATTGTGCTGAGAGTTATGAATCTTTAAGACTTTTTTCAGATTTACCTATTG 1346
|||||||| ||||||||||| || ||| || | | | | | ||||||||||||
Sbjct 1172 TTAGCATAGAATGTGCTGAGAG-CAT-CATC---AA-A--TCTATGA-ATTTACCTATTG 1222
Query 1347 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACAGAGAACCAAGTTCTGAGAA 1406
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1223 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACTGAGAACCAAGTTCTGAGAA 1282
Query 1407 CT-GAGCAAGTATCTCAGATTGGCCGAGGAAACCGGGGAGATGTTACGATATTGCCAACA 1465
| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1283 -TCGAGCAAGTATCCCAGATTGGCCGAGGTAACCGGGGAGATGTTACGATATTGCCAACA 1341
Query 1466 TTAGTCATCAATAACGCTCAATATCGAGGGAGATTGGAGAGAACCGCGGTTTTAAAGGCG 1525
||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1342 TTAGTCATCAATAACGCCCAATATCGAGGGAGATTGGAGAGAACCGCTGTTCTAAAGGCG 1401
Query 1526 ATATGCGCTGGTTTTAATGAAACATCGGAGCCTGCCATTTGCTTAAACACAGGTCTAGAG 1585
||||||||||| || || ||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 1402 ATATGCGCTGGATTCAACGAAACATCGGAACCTCCCATTTGCTTAAACACAGGTTTAGAG 1461
Query 1586 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGATACAAAAGCAAACATCACT 1645
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1462 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGACACAAAAGCAAACATAACC 1521
Query 1646 GCTTGTCAAGACACATTCAGAGGAAGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1522 GCTTGTCAAGACACATTCAGAGGACGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1581
Query 1706 TATAAAGGAGACGGGTACACTTCATGTACACCTTATGGGCCTGCGAGGTGTACTATGAAC 1765
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1582 TATAAAGGCGACGGGTACACTTCATGTACACCTTATGGGCCTGCCAGGTGTACTATTAAC 1641
Query 1766 AATGGAGGTTGCTGGTCTGACACAAGGAACGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1825
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1642 AATGGAGGTTGCTGGTCTGACACAAGAAATGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1701
Query 1826 GTATCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTGACGTGTGAAGAT 1885
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1702 GTGTCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTCACGTGTGAAGAT 1761
Query 1886 ATTAACGAATGTAAAGAGCGTTCGGTATGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1945
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1762 ATTAACGAATGTAAAGAGCGTTCGGTGTGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1821
Query 1946 TGGGGTGGATACAAATGCAGCTGTTCTGGTGACCGGCTTTACATAAACGATCAAGATACT 2005
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 1822 TGGGGTGGATACAAATGCAGTTGTTCTGGCGACAAGCTTTACATAAACGATCAAGATACT 1881
Query 2006 TGTATAGAGAGATATGGATCCAAAACGGCATGGTGGCTCACATTCTTGATACTGGCTATC 2065
|||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||
Sbjct 1882 TGTATAGAGAGATATGGATCCAAAACAGCATGGTGGCTCACACTCTTGATCCTAGCTATC 1941
Query 2066 GTTGCAGTAGCCGGTTTAGCTGGTTATATATTCTACAAATACCGGTTCAGGTCTTACATG 2125
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1942 GTCGCAGTAGCCGGTTTAGCTGGTTATCTATTCTACAAATACCGGTTCAGGTCTTACATG 2001
Query 2126 GACTCAGAGATTATGACGATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2185
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 GACTCGGAGATTATGACCATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2061
Query 2186 GAAGTTCCATCAGAAGCCGAGCCTTTTACACTCTAA--TAGTAT-AT--GACCAAAGTAA 2240
||||||||||||||||| |||||||||||||||||| || ||| || |||||||||||
Sbjct 2062 GAAGTTCCATCAGAAGCTGAGCCTTTTACACTCTAAACTAATATTATATGACCAAAGTAA 2121
Query 2241 CCAAAACTGTCATACACAAAGAAATGTTTGAGATCAATTAATGTACATATGAATTATACT 2300
|||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2122 CCAAAACTTTCCTACACAAAGAAATGTTTGAGATCAATTAATGTACATATAAACTATACT 2181
Query 2301 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATTTTCATGGCaaaaaaaTAAATAATT 2360
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2182 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATT--CATGGCAAAAAA---------- 2229
Query 2361 TGGATGTAAAGAGACTTTTGAAGAAAATAAAACAAATATTGCTTT 2405
| ||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 2230 -G-ATGTAAAGAAACTTTTCAAGAAAATAAAACAAAAATTGCTTT 2272
Score = 300 bits (162), Expect = 4e-80
Identities = 202/220 (92%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 85 TAACAAAAGTCTAACATCTTCCAAATT-TTTTCCATTTTCTAAAATTATGTTTTGAGTTT 143
|||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
Sbjct 1 TAACAAAAGTCTAACATCTTCC-AATTCTTTTCCATTTTCTAAAA-TATGTTTTGAGTGT 58
Query 144 GACGTTTCTTTGT--TATTTATATAAACTATAGTATGCTATCATCTTCAATCAGAAACAG 201
|| ||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 59 GATTTTTCTTTTTCGTATTTATATGAAC--TAGTATGCTATCATCTTCAATCAGAAACAG 116
Query 202 TTCCACAGAAGttttctgttttaacttttcctctgtttttgatttttctctctgaatctc 261
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 117 TTCCACAGAAGTTTTCTGTTTTATCTTTTCCTCTGTTTTTGATTTTTCTCTCTGAATCTC 176
Query 262 tccttcatttcCCCGGGAAATAGTACCAGAAAGGTTATCA 301
|||||||||| || |||||||||||| ||| ||||| |||
Sbjct 177 TCCTTCATTTTCCGGGGAAATAGTACAAGAGAGGTTTTCA 216
> Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513
Length=1896
Score = 628 bits (340), Expect = 4e-179
Identities = 1250/1671 (75%), Gaps = 135/1671 (8%)
Strand=Plus/Plus
Query 570 CTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGT 628
|||||| |||||| ||||| ||||| || |||||||| || ||| | || | ||||||
Sbjct 233 CTTTTGATAAAACTTTCAAACCCAAATTCCCTCGTCCTACCATT-TTAATCATCGATCGT 291
Query 629 GGAG-GTTGCTACTTTGCCTTAAAAGCGTGGCACGCG-CAGCAAGCAGGCGCGGCTGCAG 686
|||| | ||||||||||| ||||| | ||| ||| | || ||| | || || || ||||
Sbjct 292 GGAGAG-TGCTACTTTGCATTAAAGGTATGGAACG-GTCAACAATCCGGTGCAGCAGCAG 349
Query 687 TTCTT-GTGGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGA-G 744
|| || || || ||||| || || ||||||||| | || ||||||||||| ||||| |
Sbjct 350 TT-TTAGTAGCTGATAACGTTGATGAGCCATTGATAACTATGGATTCACCTGAGGA-ATC 407
Query 745 CAAAGATGCGGATG-GTTTCATAGAGAAGCT-AACAATCCCATCGG-TGTTAATCGA-TA 800
|||||| || |||| ||| |||||||| || ||| || || |||| | |||||||| |
Sbjct 408 CAAAGAAGCTGATGACTTT-ATAGAGAAACTCAAC-ATTCCTTCGGCT-TTAATCGACT- 463
Query 801 AATCATTT-G-GAGAT-GACTTAAGACAAGGGT-TTCAGAAAGG-GAAAAACATAGTTAT 855
|| ||| | | || ||| ||| ||| | | || | ||||| || || |||| |
Sbjct 464 TTTC-TTTCGCCA-ATACACTCAAG-CAA-GCTCTTAAAAAAGGCGAGGAA-GTAGTCCT 518
Query 856 -AAAACTAGATTGGAGAGAGTC-TGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTG 913
|| | |||| ||||| ||||| | | |||||||| ||| ||||||| || |||||| |
Sbjct 519 GAAGA-TAGACTGGAGTGAGTCAT-TACCTCATCCGGATGAGAGAGTTGAGTATGAGTTA 576
Query 914 TGGACTAATAGC-AATGATGAGTGTGGTGCACGGTGTGATGAACAGATGGACTTTGTCAA 972
|||||||| | | ||||||||||||||||| ||||| ||||| |||||| | ||||||||
Sbjct 577 TGGACTAACA-CGAATGATGAGTGTGGTGCGCGGTGCGATGAGCAGATGAATTTTGTCAA 635
Query 973 GAACTTTAAAGGTCATGCTCAGATACTCGAAAAAGGCGGTTATAC-C-GCGTTTACGCCG 1030
|||||| ||||| ||||| ||||| || |||||||| || |||| | ||| || ||
Sbjct 636 GAACTTCAAAGGGCATGCGCAGATTCTTGAAAAAGGAGG--ATACTCTTTGTTCACACCT 693
Query 1031 CATTATATTACTTGGTTTTGCCCTTTTCAGTTTAT-AAAC-AGTCCA-CATTGTAAGTCT 1087
||||| ||||| |||||||| || | || |||| | || | | || |||||||||
Sbjct 694 CATTACATTACATGGTTTTGTCC--TAAAGATTATGTTTCTAG-CAATCAATGTAAGTCT 750
Query 1088 CAGTGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTG-AGGATAATTTCAGAGAAGG 1146
|||||||| ||||| ||||||||||||||||||||||||| | | | ||| |||| ||
Sbjct 751 CAGTGTATCAACCAAGGGAGGTATTGTGCTCCTGACCCTGAACAAGACTTT-GGAGATGG 809
Query 1147 GTATGAAGGGAAAGATGTTGTGCTT-GAGAATCTGAGACAGCTT-TGTGTGCATAGAGTT 1204
|| || || ||||| | || || ||||||||||||||| || ||||| ||||||||
Sbjct 810 ATACGATGGCAAAGACATCGT-TTTCGAGAATCTGAGACAG-TTATGTGTTCATAGAGTA 867
Query 1205 GCGAATGAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCATTC-TC- 1262
|| || |||| || | || |||||||||||||||| ||||| || |||||||| | ||
Sbjct 868 GCAAAAGAGAATAACCGGTCTTGGGTTTGGTGGGACTATGTGACTGATTTTCA--CATCA 925
Query 1263 GATGTTCGATGAAGGAGAAGAAATACAGCATAGATTGTGCTGAGAGTTATGAATCT-TTA 1321
| ||||| |||||||||||||| || |||| ||| |||||||||| | | | | ||
Sbjct 926 GGTGTTCAATGAAGGAGAAGAAGTATAGCAAAGAATGTGCTGAGA---A--AGT-TGTT- 978
Query 1322 AGACTTTTTTCAGATTTACCTA-TTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGC 1380
|| | | || | ||| || | |||| ||||||||||||||||||||||||||||| ||
Sbjct 979 -GA-ATCTCTC-GGTTTGCC-ACTTGACAAGATCAAGAAATGCATTGGTGATCCTGAAGC 1034
Query 1381 TGATACAGAGAACCAAGTTCTGAGAA-CTGAGCAAGTATCT-CAGATTGGCCGAGGAAAC 1438
|||| ||||| ||||| ||| || ||||||||| || ||| | || | ||| ||
Sbjct 1035 TGATGTGGAGAATGAAGTTTTGA-AAGCTGAGCAAGCG-CTTCAGGTAGGACAAGGTGAC 1092
Query 1439 CG-GGGAGATGTTACGATATTGCCAACATT-AGTCATCAATAACGCTCAATATCGAGGGA 1496
|| ||| ||||| || || ||||||||||| | || |||| || |||||||| || || |
Sbjct 1093 CGCGGG-GATGTCACAATCTTGCCAACATTGA-TCGTCAACAATGCTCAATACCGCGGTA 1150
Query 1497 GATTGGAGAGAACCGCGGTT-TTAAAGGCGATATGCGCTGGTTTTAATGAAACATCGGAG 1555
| | ||||||| || || |||| ||| ||||| | || ||||| |||| | | ||
Sbjct 1151 AACTCGAGAGAAATGCAGTACTTAA-GGCTATATGTTCAGGATTTAAGGAAAGAACTGAA 1209
Query 1556 CCTGCCATTTG-CTTAAACACAGGTCTAGAGACAAATGAGTGCCTTGAAAACAA-TGGTG 1613
|| | || || || || || | | || ||||| || || || ||| ||| ||| |
Sbjct 1210 CCGGGAATCTGTCT-AAGTGGAGATATCGAAACAAACGAATGTCTCGAAG-CAAATGGAG 1267
Query 1614 GTTGCTGGCAGGATACAAAAG-CAAACATCACTGCTTGTCAAG-ACACATTCAGAGGAAG 1671
| || |||||||| | || | | || | || ||||| |||| ||||||| || |||||
Sbjct 1268 GGTGTTGGCAGGACATGAA-GTCTAATGTAACAGCTTG-CAAGGACACATTTAGGGGAAG 1325
Query 1672 ACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAAAGGAGACGGGTACACTTCATG 1731
| |||| || || || |||||||| ||||| || ||||||||||| || || || |||||
Sbjct 1326 AGTCTGTGAATGCCCTGTTGTAAATGGTGTGCAGTATAAAGGAGATGGCTATACCTCATG 1385
Query 1732 T-ACACCTTATGGGCCTGCGAGGTG-TACTATGAA-CAATGGAGGTTGCTGGTCTGACAC 1788
| | ||||||||| ||||| || || | | || || ||| ||||||||||||||||| ||
Sbjct 1386 TGA-ACCTTATGGCCCTGCCAGATGCT-CGATTAATCAA-GGAGGTTGCTGGTCTGAAAC 1442
Query 1789 -AAGGAACGGCTTAACTTTCTCTGCTTGCTCAGA-CTCTGTAT-C-TACTGGCTG-CAAA 1843
|| || |||||||||||||| |||||||| || || || | | | | || || |
Sbjct 1443 CAAA-AAGGGCTTAACTTTCTCCGCTTGCTC-GAACT-TGGAGACAT-CGGGATGTCGC- 1497
Query 1844 TGTCCTGAAGG-TTTCCAAGGCGACGGT-TTGACGTGTGAAGATATTAACGAATGTAAAG 1901
|| ||| ||| ||| |||| || ||| || | |||||||| ||| | |||||||| |
Sbjct 1498 TGCCCTCCAGGGTTTA-AAGGAGATGGTCTTAAA-TGTGAAGACATTGATGAATGTAAGG 1555
Query 1902 AGCGTTCGG-TATGTCAATGT-AGCGGTTGCAGA-TGCAAGAACT-CATGGGGTGGATAC 1957
| | || | | ||||||||| | || |||| | || |||||| | ||||| || |
Sbjct 1556 AACAATCAGCT-TGTCAATGTGAT-GGATGCA-ACTGTAAGAACAAC-TGGGGAGGCTTT 1611
Query 1958 AAATGCAGCTGTTCTGGTGACCGGCTTTACAT-AAACGATCAAGATACTTGTATAGAGAG 2016
|||||| || ||||| | || || ||||| ||| || ||||| |||||||| |||||
Sbjct 1612 GAATGCAAATGCTCTGGAAATCGTCTCTACATGAAA-GAACAAGACACTTGTATTGAGAG 1670
Query 2017 ATAT-GGATCCAA-AA-CGGCATGGTGGCTC-ACATTCT-TGATACTGGCTATC-GTTGC 2070
| | ||||| || || ||| ||||| || || || | |||| || ||| | |||||
Sbjct 1671 A-AGCGGATC-AAGAATCGG-ATGGTT-CTTTACGTT-TGTGATTCTAGCTG-CAGTTGC 1724
Query 2071 AGTAGCCGGT-T-TAGCTGGTTATATATTCTACAAATACCGGT-TCAGGTCTTACATGGA 2127
| ||| | | ||| |||||| |||||||||| || || | |||||||||| |||||
Sbjct 1725 A--AGCATATGTGTAGGTGGTTACGTATTCTACAAGTATCG-TCTCAGGTCTTATATGGA 1781
Query 2128 CTCAGAGATTATGACGATCATGTCACAGTATATGCCACTTG-AGAGCCAAA 2177
||||| || ||| |||| ||||| ||||| |||||| ||| |||||||||
Sbjct 1782 TTCAGAAATCATGGCGATTATGTCTCAGTACATGCCA-TTGGAGAGCCAAA 1831
> Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267
Length=1860
Score = 488 bits (264), Expect = 7e-137
Identities = 1227/1672 (73%), Gaps = 145/1672 (9%)
Strand=Plus/Plus
Query 578 AAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGTGGAGGT-T 635
|||||||||| ||||||| |||| |||||| || || | || ||||||||||| || |
Sbjct 244 AAAACCTTCACTCCCAAGTCTCCTTATCCCACCATCCT-CCTCATTGATCGTGGA-GTGT 301
Query 636 GCT-ACTTTGCCTTAAAAG-CGTGGCACGCGCAGCAAGCAGGCGCGGCTGCAGTTCTTGT 693
| | |||||| ||| ||| ||| | | ||| ||| | || || || || |||||| |
Sbjct 302 G-TAACTTTG-CTTTGAAGATATGGAATGGGCAACAATCCGGAGCAGCGGCTGTTCTTTT 359
Query 694 GGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGA-GCAAAGATG 752
|| ||||| | | ||||||||||| |||||||||||||||||||| | | |||||
Sbjct 360 AGCAGATAACATTGTTGAGCCATTGTTAACAATGGATTCACCAGAGGA-ATCCCAAGATA 418
Query 753 CGGA---TG-GTTTCATAGAGAAGCT-AACAATCCCATCGG-TGTTAATCGATAAATCAT 806
|| || ||| ||||| || | || |||||||||| | || ||| | || |
Sbjct 419 AAGATCCTGACTTT-ATAGACAAAATCAA-GATCCCATCGGCT-TTGATCCTTCGCTC-T 474
Query 807 TT-GGAGAT-GACTTAAGACAAGGGT-TTCAGAA-AGG-GAAAAACATAGT-TAT-AAAA 859
|| || ||| | || ||| || | | || | || ||| || || || | | | || |
Sbjct 475 TTCGGTGATAGCCTCAAG--AATGCTCTT-AAAAGAGGCGAGGAA-GTAATCT-TGAAGA 529
Query 860 CTAGATTGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACT 919
| |||||||| |||||| | || | |||||| ||||||| || |||||||| ||| ||
Sbjct 530 -TTGATTGGAGTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCT 588
Query 920 AATAGC-AATGATGAGTGT-G-GTGCACGGTGTGATGAA-CAGA-TGGACTTT-GTCAAG 973
|| | | || ||| | ||| | |||||| || || || || | | || ||| | |||
Sbjct 589 AACA-CTAACGATAAATGTGGTGTGCAC--TGCCAT-AAGCA-ATTAGA-TTTCATAAAG 642
Query 974 AACTTTAAAGGTCA-TGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACG-CCGC 1031
|||||| |||| | |||||||| || |||||||| |||||||| ||| | | || |
Sbjct 643 AACTTT-AAGGGAACGGCTCAGATTCTTGAAAAAGGTGGTTATACTTTGTTCA-GACCTC 700
Query 1032 ATTATATTACTTGGTTTTG-CCCTTTTCAGTTTATAAACAGTCCA-CATTGTAAGTCTCA 1089
|||| ||| |||||||||| ||| || | | || | | || |||||| ||||
Sbjct 701 ATTACATTGCTTGGTTTTGTCCC-AAAGAGCTGCTGCTTAG-CAAGCAGTGTAAGACTCA 758
Query 1090 GTGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTGAG-GATAATTTCAGAGAAGGGT 1148
|||| ||||||| |||||||||||||||||||||||| || | | ||| | ||| || |
Sbjct 759 GTGTCTAAACCAAGGGAGGTATTGTGCTCCTGACCCTAAGCAAGACTTTGA-AGATGGAT 817
Query 1149 ATGAA-GGGAAAGATGTTGTGCTT--GAGAATCTGAGACAGCTT-TGTGTGCATAGAGTT 1204
|| || |||||||| || || || ||||||||||||||| || ||||| ||||||||
Sbjct 818 AT-AATGGGAAAGACGTCGT--TTACGAGAATCTGAGACAG-TTATGTGTTCATAGAGTA 873
Query 1205 GCGAATGAG-AGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCATTC-TC 1262
|| || ||| || | || |||||||||||||||||||||| || |||||| | | ||
Sbjct 874 GCTAAGGAGAAG-AACACTTCTTGGGTTTGGTGGGATTATGTGACAGATTTT-A-ACATC 930
Query 1263 -GATGTTCGATGAAGGAGAAGAAATACAGCATAGATTGTGCTGAGAGTTA-TGAATCTTT 1320
| ||||| |||||||||||||||||||||| ||| || || |||| | || || |
Sbjct 931 AGGTGTTCTATGAAGGAGAAGAAATACAGCAGAGAATGCGC--AGAG--ACTG--TC-GT 983
Query 1321 AAGACTTTTTTCAGATTTACCTATTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGC 1380
|| | | || | || || |||||||||||||||||||||||||||||||||| ||
Sbjct 984 -GGA-ATCTCTC-GGGTTGTCTCTTGAGAAGATCAAGAAATGCATTGGTGATCCTGATGC 1040
Query 1381 TGATACAGAGAACCAAGTTCTGAGAA-CTGAGCAAG-TATCTCAGATT-GGCCGAG-GAA 1436
|||| |||||| ||||||| | || | || |||| | | |||| || |||| || |||
Sbjct 1041 TGATGTAGAGAATGAAGTTCTAA-AAGCCGAACAAGCTTT-TCAG-TTAGGCCAAGAGAA 1097
Query 1437 AC-CGGGGAGATGTTACGATATTGCCAACATT-AGTCATCAATAACGCTCAATATCGAGG 1494
| ||||| |||||| || || |||||||| | | ||||| || ||||||||||| ||
Sbjct 1098 TCGCGGGGT--TGTTACAATCTTTCCAACATTGA-TGATCAACAATGCTCAATATCGCGG 1154
Query 1495 GAGATTGGAGAGAACCGCGGTTTTAAAGGCGATATGCGCTGGTTTTAATGAAACATCGGA 1554
| | |||||||||| ||||| | ||||| ||||| | || || || |||| | | ||
Sbjct 1155 TAAACTGGAGAGAACTGCGGTGCTGAAGGCTATATGTTCAGGATTCAAGGAAAGAACCGA 1214
Query 1555 GCCTGCCATTTGCTTAAACACAGGTCTAGAGACAAATGAGTGCCTTGA-A-AACAATGGT 1612
||| | || || || || ||| | ||||||| ||||| || ||| | | || |||||
Sbjct 1215 ACCTTCAATATGTTTGAATGCAGATATAGAGACCAATGAATGTCTT-ATAGAA-AATGGA 1272
Query 1613 GGTTGCTGGCAGGATACAAAAG--CAAACATCACTGCTTGTCAAG-ACACATTCAGAGGA 1669
|| || ||||| || |||||| | || | || ||||| |||| ||||||| || |||
Sbjct 1273 GGATGTTGGCAAGA--CAAAAGATCTAATGTAACGGCTTG-CAAGGACACATTTAGGGGA 1329
Query 1670 AGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAAAGGAGACGGGTACACTTCA 1729
||| | || ||||| |||||| | || || ||||||||||||||||| || || || ||
Sbjct 1330 AGAGTATGTGAGTGCCCGGTTTTTAATGGGGTTCAATATAAAGGAGATGGTTATACCTCC 1389
Query 1730 TGTACACCTTATGGGCCTGCGAGGTGTACTAT-GAACAATGGAGGTTGCTGGTCTGACAC 1788
|| | ||||||||| ||||| || ||| | || |||||||||||| ||||||||||| ||
Sbjct 1390 TGCAAACCTTATGGACCTGCTAGATGTTC-ATCGAACAATGGAGGCTGCTGGTCTGAAAC 1448
Query 1789 AAGGAACGGCT-TAACTTTCTCTGCTTGCTCAGACTCTGT-ATC-TACTGGCTG-CAAAT 1844
|| ||||| | |||||||||||||||| ||| |||| | | | | | || || | |
Sbjct 1449 CAG-AACGGGTCTAACTTTCTCTGCTTGTTCAAACTCAGAGA-CAT-CAGGATGTCGT-T 1504
Query 1845 GTCCTGAAGGTTTCCAAGGCGACGGTTTGACGTGTGAAGATATTAACGAATGTAAAGAGC 1904
||||| ||| |||| || || ||| ||| |||||||| || | ||||| ||||||
Sbjct 1505 GTCCTCTAGGCTTCCGTGGAGATGGTCTGAAATGTGAAGACATCGATGAATGCAAAGAGA 1564
Query 1905 GTTCGG-TATGTCAATGTAGCGGT-TGCAGATGCAAGAACTCAT-GGGGTGGATACAAAT 1961
|| | | ||||||||| | | |||| |||||||||| || |||| ||||| |||
Sbjct 1565 AATCAGCT-TGTCAATGT-GATGACTGCAAATGCAAGAACA-ATTGGGGAGGATATGAAT 1621
Query 1962 GCAGCTGTTCTGGTGACCG-GCTTTACAT-AAACGATCAAGATACTTGTATAGAGAGAT- 2018
||| |||||| | | | | || || ||| || |||| |||||||| ||||||
Sbjct 1622 GCAAATGTTCTAACAATAGTG-TCTATATGAAA-GAAGAAGACACTTGTATTGAGAGAAG 1679
Query 2019 A--TGGATCCAA-AA-CGGCATGGTGGCTCACA-TTCTTGAT--ACTGGCTATCGTTGCA 2071
| |||||| || || | | ||||| | ||||| || | | | | | || || | ||
Sbjct 1680 AAGTGGATC-AAGAAGCAG-ATGGTTGTTCACAATTGTGGTTCTAATCGCCAT--T-GCG 1734
Query 2072 G-TAGC-CGGTTTAGCTGGTTATATATTCTACAAATACCGG-TTCAGGTCTTACATGGAC 2128
| || | | ||||| || ||||||||||||||| |||| ||||| |||||||||||
Sbjct 1735 GGTATCTC--TTTAGGTGCTTATATATTCTACAAGTACCATCTTCAG-TCTTACATGGAT 1791
Query 2129 TCAGAGATTA-TGACG-ATCATGTCACAGTATATGCCACTTGAGAGCCAAAG 2178
|||||||| | || | || ||||| ||||| || ||||| || ||||||||
Sbjct 1792 TCAGAGAT-AGTGT-GTATTATGTCTCAGTACATACCACTCGATAGCCAAAG 1841
> Ahg931204 jgi|Araly1|931204|scaffold_303661.1
Length=1927
Score = 230 bits (124), Expect = 5e-59
Identities = 692/954 (73%), Gaps = 87/954 (9%)
Strand=Plus/Plus
Query 866 TGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGC 925
||||||||| |||| || ||||||||| | | || || |||||| ||||||||||||||
Sbjct 555 TGGAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGC 614
Query 926 AATGATGAGTGTGGTGC-ACGGTGTGA--TGAACAGATGGACTTTGTCAA-GAACTTTAA 981
|||||||||||||| | | | ||||| || |||||| ||||| || || |||||
Sbjct 615 AATGATGAGTGTGGGGTTAAG-TGTGACATGTT--GATGGAGTTTGTGAAAGAT-TTTAA 670
Query 982 AGGT-CATGCTCAGATACTCGAAAAAGGCGGTTATACCGC-GTTTACG-CCGCATTATAT 1038
||| | ||||||||| || || |||||||||| ||| || ||||| | || ||||||||
Sbjct 671 GGGTGC-TGCTCAGATTCTTGAGAAAGGCGGTTTTAC-GCAGTTTA-GACCTCATTATAT 727
Query 1039 TACTTGGTTTTGCCCTTTT-CAGTTT-ATAAACAGTCC-ACATTGTAAGTCTCAGTGTAT 1095
|||||||| ||| ||| | | ||| | || || ||| |||||||||||||||||
Sbjct 728 TACTTGGTATTGTCCTCATGC--TTTCACGTTGAG-CCGACAGTGTAAGTCTCAGTGTAT 784
Query 1096 AAACCATGGGA-GGTATTGTGCTCCTGACCCTGAGGATAA-TTTCAGAGAAGGG-TATGA 1152
|| | |||| |||| || |||||||| || || | | ||| || ||| |||||
Sbjct 785 CAATAA-GGGAAGGTACTGCGCTCCTGATCCAGAACAGGACTTT-AGCTC-GGGATATGA 841
Query 1153 AGGGAAAGATGTTGT-GCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTG-CGAAT 1210
|| ||||| ||||| | | || ||| |||||||||||||||| | | || || |||||
Sbjct 842 TGGAAAAGACGTTGTTG-TGGAAAATTTGAGACAGCTTTGTGTTTACA-AGGTGGCGAAT 899
Query 1211 GAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCAT-TCTCGATGTTC 1269
|| | | | || ||||| |||||||||||||| || ||||| || || ||||| |
Sbjct 900 GAAACCGGGAAACCCTGGGTCTGGTGGGATTATGTCACTGATTTCCAGATCA-GATGTCC 958
Query 1270 GATGAAGGAGAAGAAATACAGCATAG-ATTGTGCTGAGAGTTATGA-ATCTTTAAGACTT 1327
||||||||||||||||||| || || | |||||||| || | ||| || | |
Sbjct 959 CATGAAGGAGAAGAAATACAACA-AGGAGTGTGCTGA---TTCCGTTATC---AA-A-TC 1009
Query 1328 TTTTCAGATTT-ACCTATTGAGAAGATCAAGA-AA-TGCATTGGTGATCCTGAGGCTGA- 1383
| || || || | || | | || | | || || || || || || || || |||||
Sbjct 1010 TCTTG-GAATTGA--TAGTAAAAA-A-CTTGACAAGTGTATGGGAGACCCCGATGCTGAC 1064
Query 1384 TACAGAGAA-CCAAGTTCTGA-G-AACTGAGCAAGTAT-CTCA-GATTGGCCGAGGAAAC 1438
| || || ||| ||||| | | || || |||| || |||| | ||||| ||| |
Sbjct 1065 TTG-GACAATCCA-GTTCTTAAGGAA--GAACAAG-ATGCTCAAG-TTGGCA-AGGGTTC 1117
Query 1439 C-GGGGAGATGTTACGATATTGCCAACATTAGTCATCAATAAC-GCTCAATATCGAGGGA 1496
|||| |||||||| |||||||| || ||||| |||| ||| | || || ||||| |
Sbjct 1118 AAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA-CAGTACCGAGGCA 1176
Query 1497 -GATTGGAGAGAACCGCGGTTTTAAAGGCGATATGCGCTGGTTTTAATGAAAC-ATCGGA 1554
| |||||||| | || || | ||||| ||||| |||||||| | || || | | ||
Sbjct 1177 AG-TTGGAGAGGAGTGCAGTACTGAAGGCTCTATGCTCTGGTTTTGAGGAGACCA-CTGA 1234
Query 1555 GCCTGCCATTTGCTTAAACACAGGTCTAGAGACAAATGAGTGCCTT-GAAAACAATGGTG 1613
|| || || ||| | | ||||| | | ||| |||| |||||| || || |||||||| |
Sbjct 1235 ACCAGCTATATGCCTCAGCACAGATGTGGAGTCAAACGAGTGC-TTAGATAACAATGGCG 1293
Query 1614 GTTGCTGGCAGGATACAAA-AGCAAACATCACTGCTTGTCAAG-ACACATT-CAGAGGAA 1670
|||| ||||| |||| || ||| ||||| |||||||| |||| | ||||| | | ||||
Sbjct 1294 GTTGTTGGCAAGATA-AATCAGCCAACATAACTGCTTG-CAAGGATACATTTC-GTGGAA 1350
Query 1671 GACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAA-AGGAGACGGGTACA-CTTC 1728
|| | ||||||||||| || | ||||| |||| | | ||| || || |||| | |
Sbjct 1351 GAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAAT-TCACAGGGGATGGTTACAGCCAC 1409
Query 1729 ATGT-ACACCTTAT-GGGCCTGCGAGGTGTACTATGAACAATGGAGGTTGCTGG 1780
||| | ||| | ||||| | ||| || || || |||||||||||||| |||
Sbjct 1410 -TGTGA-ACCA-AGCGGGCCAGGGAGATGCACAATCAACAATGGAGGTTGTTGG 1460
> Ahg938176 jgi|Araly1|938176|scaffold_502367.1
Length=1913
Score = 213 bits (115), Expect = 5e-54
Identities = 342/447 (77%), Gaps = 34/447 (8%)
Strand=Plus/Plus
Query 860 CTAGATTGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACT 919
|||||||||| ||||| || |||||||||||| || | ||||| ||||| |||||||||
Sbjct 538 CTAGATTGGACTGAGTCGGTTCCTCATCCTGATGAGCGTGTAGAGTATGAACTGTGGACT 597
Query 920 AATAGCAATGATGAGTGTGGTGCACG--GTGTGATGAA-CAGATGGACTTTGTCAAGAAC 976
|||||||||||||||||||| | | | ||||||| | ||||| || ||| |||| ||
Sbjct 598 AATAGCAATGATGAGTGTGG-GAA-GAAGTGTGAT-ACTCAGATTGAGTTTCTCAAAAA- 653
Query 977 TTT-AAAGGT-CATGCTCAGATACTCGAAAAAGGCGGTTATAC-CGCGTTTACGCCGCAT 1033
||| ||||| | ||||||||| || || || || || |||| | ||| ||||| |||
Sbjct 654 TTTCAAAGGAGC-TGCTCAGATTCTTGAGAAGGGTGGGCATACTCA-GTTCACGCCACAT 711
Query 1034 TATATTACTTGGTTTTGCCCTTTTCAG-TTTATAAAC--AGTCCACATTGTAAGTCTCAG 1090
||||| || |||| || ||| || ||| || | ||| ||| || |||||||||
Sbjct 712 TATATCACCTGGTACTGTCCTGA--AGCTTT-TACGCTGAGTAAACAGTGCAAGTCTCAG 768
Query 1091 TGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTGAGGATAATTTCAGAGAAGGGTAT 1150
|| || |||||||| ||||| ||||| ||||| |||||| | |||| | | ||||||||
Sbjct 769 TGCATCAACCATGGAAGGTACTGTGCGCCTGATCCTGAGCAGGATTTTACAAAAGGGTAT 828
Query 1151 GAAGGGAAAG-ATGTTGT-GCTTGAGAATCTGA-GACAG-CTTTGTGTGC-ATAGAGTTG 1205
|| || |||| ||||||| | || ||||||| | | ||| ||| | || | | ||||| |
Sbjct 829 GATGG-AAAGGATGTTGTCG-TTCAGAATCT-ACGCCAGGCTT-GCGT-CTACAGAGT-G 882
Query 1206 C-GAATGAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTT-C-ATTCTC 1262
||||||||| | | ||| ||||| |||||||| ||||| || || ||| | || | |
Sbjct 883 ATGAATGAGAGCGGTAAGCCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCCAT-C-C 940
Query 1263 GATGTTCGATGAAGGAGAAGAAATACA 1289
| ||| | |||||||||||||| ||||
Sbjct 941 GGTGTCCAATGAAGGAGAAGAAGTACA 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90616692855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5