BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20130.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492856 jgi|Araly1|492856|fgenesh2_kg.7__2289__AT4G20130.1 2414 0.0
> Ahg492856 jgi|Araly1|492856|fgenesh2_kg.7__2289__AT4G20130.1
Length=1679
Score = 2414 bits (1307), Expect = 0.0
Identities = 1436/1499 (96%), Gaps = 6/1499 (0%)
Strand=Plus/Plus
Query 2 CTAAACCCATTTTCTTCTGTTGAGGAATGGCTTCTTCAGTCTCTCTTCAGTTCCTGACCA 61
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 CTAAACCCATTTTCTTCAGTTGAGGAATGGCTTCTTCAGTCTCTCTTCAGTACCTGACCA 60
Query 62 ACACCTTTATCTCCAAACCTCAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACCTTTATCTCCAAACCTCAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCA 120
Query 122 GAAGCAATTT-ATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATT 180
|||||||||| | |||||||||||||||||||||| ||||||||||||||| | ||| ||
Sbjct 121 GAAGCAATTTCA-TAAGAGACAGACAAAATGGTGTCCGACCCATCAAAGTTACTTCTCTT 179
Query 181 GAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 GAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCAGAAGAATCTTCCTCGTCCGAG 239
Query 241 CTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTAT 300
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 TTGGAGCCAGCAGATCCGGATTTCTACAAAATTGGGTATGTTCGAAGTGTGAGAGCTTAT 299
Query 301 GGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAA 360
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 300 GGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTTTATGCTTCTAAGGATATTGAA 359
Query 361 CCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGA 420
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 360 CCTCGCCGTCGAGCTAGAGTGATAATGGAGATTCCTCTTGAATTGATGATAACCATTAGA 419
Query 421 CAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGAT 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 CAGAAGCATCCTTGGATGTTTTTCCCTGATATTGTGCCAATTGGTCATCCTATTTTCGAT 479
Query 481 ATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 ATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTGGCGTGTCTTCTGTTA 539
Query 541 TTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCT 600
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 540 TTCTCTTTTGATCGGGATGATCACTTCTGGCGACTCTATGGCGATTTCCTTCCTGCTGCT 599
Query 601 GATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCT 660
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGAGTGCAGCAGCCTGCTTCTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCT 659
Query 661 GATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAAT 720
||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 660 GATCTTGTTTCAACTATTAGACAACAGCAGAAACGAGTCCTAGAATTTTGGGAAAAGAAT 719
Query 721 TGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATA 780
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 720 TGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCTAGAAAGATTTATA 779
Query 781 TGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTG 840
||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 780 TGGGCAGTTAGTATCGCACAGACACGATGCATTAGTATGCAAACTAGGATCGGTGCTTTG 839
Query 841 GTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCA 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCCTTTGAACCA 899
Query 901 AACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGT 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 AACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTTGAGGTTATGTCAAATGCTGGT 959
Query 961 CAAGAC-ATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAA 1019
|||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 960 CAAG-CAATTAAGAAAGGCGAAGAAATGACGATAAATTACATGCCAGGCCAGAAAAACAA 1018
Query 1020 CATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTT 1078
Query 1080 CTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCT 1139
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1079 CTCTGGAGCTTCTCGCATCCATTTAAATTCCTTTTTATCGATCTTCAATATTTTTGGTCT 1138
Query 1140 TCCTGAAGAATATTACCATGACAGCGAGTTATCGAGG-GGCGATACTTTTGTTGATGGAG 1198
||||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 1139 TCCTGAAGAATATTACCATGACAGCGAGTTAGCG-GGAGGTGATACTTTTGTTGATGGAG 1197
Query 1199 CAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATAC 1258
||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1198 CAGTTATAGCTGCAGCAAGAACATTGCCCACTTGGTCAGACATAGATCTTCCTCCAATTC 1257
Query 1259 CGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGG 1318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGG 1317
Query 1319 AATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGA 1378
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1318 AATATCCCACAACAGCAGACCAAGACCAGAAATTGCTAGATTCAATGTCAGAAGCAAGGA 1377
Query 1379 CAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTA 1438
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1378 CAACGTTTGCGACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATTGGAAAGATCA 1437
Query 1439 TCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGATTCAAGCAAAAAATAATT 1497
|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 1438 TCAAGGCACTTGACATCTATCAAGAACGGTTACTATTTTGATTCAAGCGAAAAATAATT 1496
Score = 272 bits (147), Expect = 6e-72
Identities = 179/193 (93%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 1535 TTGAGCTACTTAGAAACTGCACCATGTAATTGAAAGGTTCCTGtttttttttttGTTTAG 1594
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1495 TTGAGCTACTTAGAAACTGCACCATGGAATTGAAAGGTTCCTG------TTTTTGTTTAG 1548
Query 1595 TGTAAGGTTATGTATTTGTATGGAACAGTTAGACTAAGTGTGTTAGTTTGTTTTAATCGC 1654
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1549 TGTAAGCTTATGTATTTGTATGGAACAGTTAGACTAAATGTGTTAGTTTGTTTTAATCGC 1608
Query 1655 AATCACAAACAAATCATAACCTCTTCTTTTCTTGGCTGCTTTAATGAGTTTGATTAGCCA 1714
|||||||||| ||||||||| ||||||||| ||||||| ||||||| |||||||||||||
Sbjct 1609 AATCACAAACCAATCATAACTTCTTCTTTT-TTGGCTG-TTTAATGGGTTTGATTAGCCA 1666
Query 1715 ACAAACGCTTTGG 1727
|||||||||||||
Sbjct 1667 ACAAACGCTTTGG 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5