BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20150.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890146 jgi|Araly1|890146|Al_scaffold_0007_2132 398 3e-110
> Ahg890146 jgi|Araly1|890146|Al_scaffold_0007_2132
Length=246
Score = 398 bits (215), Expect = 3e-110
Identities = 235/245 (96%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 98 ATGCCTATAAGTGCGACAATGGTCGGAGCTTTGCTGGGTCTCGGTACCCAGATGTACTCC 157
|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1 ATGCCTCTAAGTGCGACAATGGTCGGAGCTTTATTGGGTCTCGGAACCCAGATGTACTCC 60
Query 158 AACGCCCTCCGCAAGCTCCCTTATATGCGTCATCCGTGGGAGCATGTGGTGGGTATGGGA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACGCCCTCCGCAAGCTCCCTTATATGCGTCATCCGTGGGAGCATGTGGTGGGTATGGGA 120
Query 218 CTTGGTGCTGTGTTTGCGAACCAGCTCGTGAAATGGGATGTGAAGCTTAAGGAAGATCTT 277
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CTTGGTGCTGTGTTCGCGAACCAGCTTGTGAAATGGGATGTGAAGCTTAAGGAAGATCTC 180
Query 278 GATGTGATGCTCGCTAAGGCTAGAGCTGCTAATGAGCGCCGTTACTTTGATGAAGATCGG 337
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGTGATGCTTGCTAAAGCCAGAGCTGCTAATGAGCGCCGTTACTTTGATGAAGATCGG 240
Query 338 GATTA 342
|||||
Sbjct 241 GATTA 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5