BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20190.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492849 jgi|Araly1|492849|fgenesh2_kg.7__2282__AT4G20190.1 1740 0.0
> Ahg492849 jgi|Araly1|492849|fgenesh2_kg.7__2282__AT4G20190.1
Length=1184
Score = 1740 bits (942), Expect = 0.0
Identities = 1108/1186 (93%), Gaps = 19/1186 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACAGATGTTCTCAGCTTCAGGGACGATAGTAGTCTCGAGGACTGGCATGACTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACAGATGTTCTCAGCTTCAGGGACGATAGTAGTCTCGAGGACTGGCATGACTTT 60
Query 61 GAGGTTCTAGGTGGTGGAGACGAGCCCAAGATTCTTATCAAGAAGACGAGTATGCAATCC 120
||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GAGGTTCTAAGCCGCGGAGACGAGCCCAAGATTCTGATCAAGAAGACGAGTATGCAATCC 120
Query 121 GTATCCGAGAGGCGGATCTCGGTTGATCCGCAATCGCTATTGTCCAGGAATGGGAGCTTC 180
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 CTATCCGAGAGGCGGATATCGGTTGATCCGCAATCGCTATTGTCGAGGAACGGGAGCTTC 180
Query 181 GATATGATAGTCTCACGTCCGAGAGACATCGATGACTTGCCGTTGGATCATCAAATGAAG 240
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 181 GATATGATAGTCTCGCGTCCGAGAGACATTGATGACATGCCGTTGGATCATCAAATGAAG 240
Query 241 ACGAAGTTTGTGAGCTGCAGCCTCCCAAACTCAGCAGCTACGTCACCTAGAAATAGCTCT 300
||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 241 ACGAAGTTTGTGAGCTGCAGCCTTCCAAACTCAGCAGCCACGTCACCTAGACATAGCTCG 300
Query 301 ATTCACAACTGGAAGGACAGAACAACTGAGCAAGTTCTTGACCTAATGCTCGTTCAAGAT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCACAACTGGAAGGACAGAACCACTGAGCAAGTTCTTGACCTAATGCTCGTTCAAGAT 360
Query 361 GCAGCCACTGCGTTTCGAAGAAGCAAATCTTGCGGCGAAGGACGTGCTTGCACACCATCG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 GCAGCCACTGCGTTTCGAAGAAGCAAATCTTGCGGCGAAGGACGTGCTTGTACTCCATCG 420
Query 421 CTCGATTTCGACATGCTATTGCATAAATCAAGAAATGCACATCATAATC--AA-AATCAT 477
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct 421 CTCGATTTCGACATGCTATTGCATAAATCAAGAAATGGACATCATAATCCTAATAATAAT 480
Query 478 CATCGT------GGCT-TCTCTTCCTCTAACTCTAAGAGTCTCTCTCACAAGAGTAGTGG 530
|||||| |||| | |||||||||||||| |||||||| |||||||||||||||||
Sbjct 481 CATCGTCATCATGGCTAT-TCTTCCTCTAACTCCAAGAGTCTATCTCACAAGAGTAGTGG 539
Query 531 AAACAACTCTTTCTTCTCCAAAACAGAGTCTAACAAAAGCAACAGAAGCAATAGCAATAC 590
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 540 AAACAACTCTTTCTTCTCAAAAACAGAGTCCAACAAAAGCAACAGAAGCAATACCAATAC 599
Query 591 C------GCGAATTCGAAAAGCATCAATTCATTCGAAGACGGATTCAAATGCAGCGCTTT 644
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CAATACCGCGAATTCGAAAAGCATCAATTCATTTGAAGACGGATTCAAATGCAGCGCTTT 659
Query 645 GTGTCTATACCTACCCGGTTTCAGCAAAGGAAAGCCCGTAAGATCATCTCGAAAAGGTGA 704
||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 660 ATGTCTCTACTTACCCGGTTTCAGCAAAGGAAAACCCGTAAGATCATCTCGGAAAGGCGA 719
Query 705 TTCTTCGTTCACCAGAACAACCACGATGACTTCCTCTCAATCGATGGCAAGAACCGCTTC 764
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCTTCGTTCACCAGAACCACCACGATGACTTCCTCTCAATCGATGGCAAGAACCGCTTC 779
Query 765 CATTAGAGACACTGCCG-TGCTCTCGGCTCGAGCCTCCCTAGAGCGGTTCGAGTGCGGTT 823
|||||||||||| | | ||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 780 CATTAGAGACACAAC-GATGCTCTCAGCTCGAGCCTCGTTAGAGCGGTTTGAGTGCGGTT 838
Query 824 CTTGGACATCTTCGGCTATGATTTACGATGACAATGCCGATCTTGGTGGCCATTTCTTCG 883
| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 CATGGACCTCTTCTGCTATGATTTACGATGACAATGCGGATCTTGGTGGCCATTTCTTCG 898
Query 884 ACTTGCCTTCCGAATTGATCAAAGGTGGGCCGGGAGGGAACGATCAAGACGATCCTGTTT 943
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 899 ACTTGCCTTCCGAATTGATCAAAGGCGGCCCGGGAGGGAACGATCAAGACGATCCTGTTT 958
Query 944 CAGCTGCTTTCGTGTTCGACAAGGAACCTAATTTGGACAAAGAGATCAAAGGTGTTTTGA 1003
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 959 CAGCTGCTTTCGTGTTTGACAAGGAACCTAATTTGGAGAAAGAAATCAAAGGTGTTTTGA 1018
Query 1004 AAACGTCTGGTTCGAAATCAAGAAGATCAATGGAGTCACCACGTCACGTTCGGTTCTCAA 1063
|||| || ||||||||||| |||||||| |||||||| |||||||| |||||||||||||
Sbjct 1019 AAACTTCAGGTTCGAAATCGAGAAGATCTATGGAGTCGCCACGTCATGTTCGGTTCTCAA 1078
Query 1064 CCTCGTCGCCGGTTTCTTATCCAACGTCTCCGACACATTCAATCACGCCACGGTTGCTAC 1123
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1079 CTTCGTCGCCGGTTTCTTATCCGACGTCTCCTACACATTCAATCACGCCACGGTTGCTAC 1138
Query 1124 AAGCCACCGAGGATTTCAGTAGTTTCTTGGAAGCTCAAGCCGTGTG 1169
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGCCACCGAAGATTTCAGTAGTTTCTTGGAAGCTCAAGCCGTGTG 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5