BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20235.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 292 3e-78
Ahg330954 jgi|Araly1|330954|fgenesh1_pm.C_scaffold_8000297 279 2e-74
Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 259 3e-68
> Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881
Length=1512
Score = 292 bits (158), Expect = 3e-78
Identities = 411/526 (78%), Gaps = 46/526 (9%)
Strand=Plus/Plus
Query 1 ATGATATTGA---TCTCTCTATGCTTCACCACTTTCTTAGCCTTTCTCTT-CCTAAACCC 56
|||||||||| ||||| | ||||| || || ||||| || ||||||| | |||| |
Sbjct 25 ATGATATTGATGGTCTCTTTGTGCTTAACGACCCTCTTAACCCTTCTCTTGCTTAAA-CA 83
Query 57 ACTCCTCAAACGaaccaccaccaccaaacct-aaccaaccaccCTCTCCCTGGCGGCTTC 115
| |||||||||||||| ||| | |||| | ||| |||||| ||||| ||||| ||||
Sbjct 84 ATTCCTCAAACGAACCGCCA--A-CAAA-GTGAACTTACCACCATCTCCATGGCGACTTC 139
Query 116 CGGTTATCGGATACCTCCACCAGCTCAGCCTCCACCCTCACCGCTCCTTTCGTTCCCTCA 175
|||| || ||| ||||||||||||||||||||||||||||||| ||| | | ||||||||
Sbjct 140 CGGTGATTGGAAACCTCCACCAGCTCAGCCTCCACCCTCACCGTTCCCTCCATTCCCTCA 199
Query 176 GCCTCCGCCTATGGTCCGCTCATGCTCCTTCACTTCGGTCGTGTCCCTACCCTCGATTCT 235
||||||| || || || |||||||| ||||| || || |||| | ||| | || ||
Sbjct 200 GCCTCCG-GTACGGACCACTCATGCTGCTTCATTTTGGCCGTG----T-CCC-C-ATACT 251
Query 236 CGAAGTATATATCATCC-TCTGACGTAGCTCATGACGTCA-TGAAAACACACGATCTTAA 293
| ||| |||| ||| | || | ||||||||| || | |||||||||||||||||||
Sbjct 252 C---GTA-GTATCCTCCGGC-GAAGCAGCTCATGAGGT-ATTGAAAACACACGATCTTAA 305
Query 294 GTTTGCCAACCGTCCCAAAACCAAA-GCTGT-CGATATAATTATTAATGGTGGGAGAGAT 351
|||||||||||| ||| | | |||| || || || | |||| ||||||||| | |||
Sbjct 306 GTTTGCCAACCG-CCCGAGATCAAAAGCCGTTCG-TGGGCTTATGAATGGTGGGCGTGAT 363
Query 352 GTGGC-TTTC-TCCTCCTACGGCGAATATTGGAGACAGATGAAGAGTTTATGCACTGTCC 409
|||| ||| ||| | || || || ||||||||||||||||||||| |||||| | ||
Sbjct 364 GTGGTGTTTGGTCC-C-TATGGAGATTATTGGAGACAGATGAAGAGTGTATGCATTCTCA 421
Query 410 ATCTCCTCGGCAGGCAAA-TGGTTAG-GTCCTTTGAGAA-AGTAAGAGAAGAAGAGATAA 466
|||| ||| || |||| ||||| | |||||||||||| | |||||||||||||| |||
Sbjct 422 ATCTGCTCACCAA-CAAAATGGTT-GCGTCCTTTGAGAAGA-TAAGAGAAGAAGAGGTAA 478
Query 467 CAT-CAGTGATATGGGGAAGCTTGAGAAA-CAAAGTTCTTCTTCTT 510
|| || |||| || | ||||| |||||| ||| ||| ||||||||
Sbjct 479 -ATGCAATGAT-TGAG-AAGCTGGAGAAAGCAA-GTTGTTCTTCTT 520
> Ahg330954 jgi|Araly1|330954|fgenesh1_pm.C_scaffold_8000297
Length=1317
Score = 279 bits (151), Expect = 2e-74
Identities = 300/368 (82%), Gaps = 26/368 (7%)
Strand=Plus/Plus
Query 5 TATTGATCTCTCTATGCT-TCACCACTTTCTTAGCCT-TTCTCTTCCTAAACCCACTCCT 62
|||| || ||||| || | | || || ||||||| || || | ||| |||| ||| |
Sbjct 14 TATTAATATCTCTGTG-TATAACGACATTCTTAG-CTCTTATGTTCATAAAATCAC-GAT 70
Query 63 -CAAACGaaccaccaccaccaaacct-aaccaaccaccCTCTCCCTGGCGGCTTCCGGTT 120
|||||||||||||| || ||| || |||| |||||| ||||| ||||||||||| ||
Sbjct 71 CCAAACGAACCACCA-CA--AAA-CTGAACCCACCACCGTCTCCATGGCGGCTTCCAGTG 126
Query 121 ATCGGATACCTCCACCAGCTCAGCCTCCACCCTCACCGCTCCTTTCGTTCCCTCAGCCTC 180
|| ||| ||||||||||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 127 ATAGGAAACCTCCACCAGCTTAGCCTCCACCCTCACCGCTCCCTCCATTCCCTCAGCCTC 186
Query 181 CGCCTATGGTCCGCTCATGCTCCTTCACTTCGGTCGTGTCCCTACCCTCGATTCTCGAAG 240
||| ||||| |||||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 187 CGC-TATGGACCGCTCATGCTCCTTCACTTCGGTCGTGTCCCCACCCTCG-T-----A-G 238
Query 241 TATATATCATCCTCTGACGTAGCTCATGACGTCATGAAAACACACGATCTTAAGTTTGCC 300
| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 239 TCT----CATCCGCTGACGTAGCTCATGACGTCATGAAAACAAACGATCTTAAGTTCGCC 294
Query 301 AACCGTCCCAAAACCAAAGCTGTCGATATAATTATTAATGGTGGGAGAGATGTGGC-TTT 359
|||| ||||||| |||||||| ||| || | ||||||||| |||||||||| |||
Sbjct 295 GACCGCCCCAAAAGGAAAGCTGTTTCTATGTTTCTGAATGGTGGGCGAGATGTGGCATTT 354
Query 360 CTCCTCCT 367
||| |||
Sbjct 355 -TCC-CCT 360
Score = 76.8 bits (41), Expect = 3e-13
Identities = 61/70 (87%), Gaps = 4/70 (6%)
Strand=Plus/Plus
Query 425 AAATGGTTAGGTCCTTTGAGAAAGTAAGAGAAGAAGAGATAACATCAGTGAT-ATGGGGA 483
|||||||| ||||||||||||||||||||||||||||||||| | | || || |||| ||
Sbjct 401 AAATGGTTCGGTCCTTTGAGAAAGTAAGAGAAGAAGAGATAA-A-C-GTAATGATGGAGA 457
Query 484 AGCTTGAGAA 493
|| | |||||
Sbjct 458 AGGTGGAGAA 467
> Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1
Length=1545
Score = 259 bits (140), Expect = 3e-68
Identities = 397/515 (77%), Gaps = 41/515 (8%)
Strand=Plus/Plus
Query 8 TGATCTCTCTATGCTTCACCACTTTCTTAGCCTTTCTCTT-CCTA-AACCCACTCCTCAA 65
|||||||| | ||||| || || ||||| || |||| || | || || | |||||||
Sbjct 40 TGATCTCTTTGTGCTTGACGACCCTCTTAACCCTTCTATTGCTTAGAA--AATTCCTCAA 97
Query 66 ACGaaccaccaccaccaaacct-aaccaaccaccCTCTCCCTGGCGGCTTCCGGTTATCG 124
||| | || |||| ||| | |||| |||||| ||||| ||||| |||||||| || |
Sbjct 98 ACG-A--ACTGCCACTAAA-GTGAACCGACCACCATCTCCATGGCGACTTCCGGTGATTG 153
Query 125 GATACCTCCACCAGCTCAGCCTCCACCCTCACCGCTCCTTTCGTTCCCTCAGCCTCCGCC 184
|| ||||||||||||||||||||||||||||||| ||| | || |||||||||||| |
Sbjct 154 GAAACCTCCACCAGCTCAGCCTCCACCCTCACCGTTCCCTCCGGTCCCTCAGCCTCAGG- 212
Query 185 TATGGTCCGCTCATGCTCCTTCACTTCGGTCGTGTCCCTACCCTCGATTCTCGAAGTATA 244
|| || || |||||||||||||| || || |||||||| | | | |||| ||| |
Sbjct 213 TACGGACCTCTCATGCTCCTTCATTTTGGCCGTGTCCCCA---T--A--CTCGTAGTCTC 265
Query 245 TATCATCCTCTGACGTAGCTCATGACGTCAT-GAAAACACACGATCTTAAGTTTGCCAAC 303
| ||| ||| | |||||| || || || ||||||||| |||| ||||||||| |||
Sbjct 266 ---C-TCCGGTGAAGCAGCTCAAGAGGT-ATTGAAAACACATGATCATAAGTTTGCGAAC 320
Query 304 CGTCCCAAAACCAAA-GCTGT-CGATATAATTATTAATGGTGGGAGAGATGTGGC-TTT- 359
|| ||| | | |||| || || || | |||| ||||||||| | ||||||| |||
Sbjct 321 CG-CCCGAGATCAAAAGCCGTTCG-TGGGCTTATGAATGGTGGGCGTGATGTGGTGTTTG 378
Query 360 CTCCTCCTACGGCGAATATTGGAGACAGATGAAGAGTTTATGCACTGTCCATCTCCTCGG 419
|||| | || || |||||||||||||||||||||||| |||||| | || |||| |||
Sbjct 379 CTCC-C-TATGGAGAATATTGGAGACAGATGAAGAGTGTATGCATTCTCAATCTGCTCAC 436
Query 420 CAGGCAAA-TGGTT-AGGTCCTTTGAGAAAGTAAGAGAAGAAGAGATAACAT-CAGTGAT 476
|| |||| ||||| | ||||||||||| ||||||||||||||| |||| | || ||||
Sbjct 437 CAA-CAAAATGGTTGAA-TCCTTTGAGAAGGTAAGAGAAGAAGAGGTAAC-TGCAATGAT 493
Query 477 ATGGGGAAGCTTGAGAAA-CAAAGTTCTTCTTCTT 510
|| |||||| |||||| ||| ||| ||||||||
Sbjct 494 --GGAGAAGCTGGAGAAAGCAA-GTTGTTCTTCTT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5